Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_02030
Subject:
XR_001739017.2
Aligned Length:
4172
Identities:
1166
Gaps:
2851

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACAAGCCATAGCAGGAAACAGCGAGCTTGCAGCCTCACCGACGAGTCTCAACTAAAAGGGACTCCCGGAGCTAG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGGTGGGGACTCGGCCTCACACAGTGAGTGCCGGCTATTGGACTTTTGTCCAGTGACAGCTGAGACAACAAGGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCACGGGAGGAGGTGTAGGAGAGAAGCGCCGCGAACAGCGATCGCCCAGCACCAAGTCCGCTTCCAGGCTTTCG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GTTTCTTTGCCTCCATCTTGGGTGCGCCTTCCCGGCGTCTAGGGGAGCGAAGGCTGAGGTGGCAGCGGCAGGAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AGTCCGGCCGCGACAGGACGAACTCCCCCACTGGAAAGGATTCTGAAAGAAATGAAGTCAGCCCTCAGAAATGA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AGTTGACTGCCTGCTGGCTTTCTGTTGACTGGCCCGGAGCTGTACTGCAAGACCCTTGTGAGCTTCCCTAGTCT  444

Query    1  ---------ATGTCTGCTGAAGTCATCCATCAGGTTGAAGAAGCACTTGATACAGATGAGAAGGAGATGCTGCT  65
                     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  AAGAGTAGGATGTCTGCTGAAGTCATCCATCAGGTTGAAGAAGCACTTGATACAGATGAGAAGGAGATGCTGCT  518

Query   66  CTTTTTGTGCCGGGATGTTGCTATAGATGTGGTTCCACCTAATGTCAGGGACCTTCTGGATATTTTACGGGAAA  139
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CTTTTTGTGCCGGGATGTTGCTATAGATGTGGTTCCACCTAATGTCAGGGACCTTCTGGATATTTTACGGGAAA  592

Query  140  GAGGTAAGCTGTCTGTCGGGGACTTGGCTGAACTGCTCTACAGAGTGAGGCGATTTGACCTGCTCAAACGTATC  213
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GAGGTAAGCTGTCTGTCGGGGACTTGGCTGAACTGCTCTACAGAGTGAGGCGATTTGACCTGCTCAAACGTATC  666

Query  214  TTGAAGATGGACAGAAAAGCTGTGGAGACCCACCTGCTCAGGAACCCTCACCTTGTTTCGGACTATAGAGTGCT  287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TTGAAGATGGACAGAAAAGCTGTGGAGACCCACCTGCTCAGGAACCCTCACCTTGTTTCGGACTATAGAGTGCT  740

Query  288  GATGGCAGAGATTGGTGAGGATTTGGATAAATCTGATGTGTCCTCATTAATTTTCCTCATGAAGGATTACATGG  361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GATGGCAGAGATTGGTGAGGATTTGGATAAATCTGATGTGTCCTCATTAATTTTCCTCATGAAGGATTACATGG  814

Query  362  GCCGAGGCAAGATAAGCAAGGAGAAGAGTTTCTTGGACCTTGTGGTTGAGTTGGAGAAACTAAATCTGGTTGCC  435
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GCCGAGGCAAGATAAGCAAGGAGAAGAGTTTCTTGGACCTTGTGGTTGAGTTGGAGAAACTAAATCTGGTTGCC  888

Query  436  CCAGATCAACTGGATTTATTAGAAAAATGCCTAAAGAACATCCACAGAATAGACCTGAAGACAAAAATCCAGAA  509
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CCAGATCAACTGGATTTATTAGAAAAATGCCTAAAGAACATCCACAGAATAGACCTGAAGACAAAAATCCAGAA  962

Query  510  GTACAAGCAGTCTGTTCAAGGA--GCAGGGACAAGTTACAGGAATGTTCTCC-AAGC-----------------  563
            ||||||||||||||.|   |||  |.|.|||      ||..|.|||   .|| ||||                 
Sbjct  963  GTACAAGCAGTCTGGT---GGATGGAATGGA------ACCTGGATG---ACCAAAGCCTCCTTTAGCTTGTGGC  1024

Query  564  -AGCAATCCAAAAGAGTC---TCAAGGATCCTTCAAAT------------AAC----------------TTCAG  605
             ||.||||     |.|||   |.|  .||.|||||.||            |||                ||||.
Sbjct 1025  TAGAAATC-----GCGTCCCTTTA--TATTCTTCATATCCCAGATCTGCCAACTCCATTGCCCTGTATATTCAT  1091

Query  606  G----CTCCATAATG-GGAGAAG-------TAA------AG-----AACAAAGACTTAAGGA-----ACAGCTT  651
            |    ||.||.|||| .|..|||       |||      ||     ||.|||||.|...|||     ||||..|
Sbjct 1092  GATCTCTGCAAAATGCTGCCAAGCAGTTCTTAACATTTCAGTCTTCAAGAAAGAATCTGGGATCTGCACAGGCT  1165

Query  652  GGCGCTCAACAAGAACCAGTGAAGAAATCCATTCAGG------------AATCAGAA-----------------  696
            |||        |||.|.|..||       ||||||||            |..|.|||                 
Sbjct 1166  GGC--------AGAGCTATGGA-------CATTCAGGGGTTTTGCATGTATGCTGAACCCTACTGCCTTGCTCT  1224

Query  697  GCTTTTTTGCCTCAGA-----------------------------------GCATACCT------GAAGAG---  726
            |.|.|||.||||||.|                                   .|||||||      .|.|.|   
Sbjct 1225  GGTATTTGGCCTCACAACCACTGTCCAACTTCGGGTGATGTCACTTGGGTCTCATACCTTCCTTGCATGTGTCC  1298

Query  727  --AGAT--ACAA--------GATG---AAGAGCAAGCCCCTAGGA-ATCTGCC-TGATAA-------TCGATT-  775
              ||.|  ||||        .|||   |||||||    |.|..|| .|||.|| ||||||       ..|||| 
Sbjct 1299  CAAGTTTCACAAAACCTCCTTATGGAAAAGAGCA----CATTCGATTTCTTCCTTGATAAAAGGGACCAGATTC  1368

Query  776  GCATTGG-----------------------CAATGAGACAGAGCTTCTTCGAGACACCTTCA-CTTC--CCTGG  823
            .||||||                       ||.||          ||||..||||    ||| |.||  |.|||
Sbjct 1369  ACATTGGCCTTCTGCTTTACTTGCATTCCTCATTG----------TCTTTTAGAC----TCAGCCTCAGCTTGG  1428

Query  824  GCTATG-----AAGT---------CCAGAAATTCTTGCATCTCAGTAT-----GCATGG--------------T  864
            |||.||     ||||         |||       |.|||||.|||..|     ||||||              |
Sbjct 1429  GCTTTGTTAGCAAGTTCACTGCCACCA-------TAGCATCACAGCCTAAAGGGCATGGCTGAGACTCATTGAT  1495

Query  865  ATATCCCAGA------TTCTTGGCCAATTTGC-CTGTATGCCCGAGCACCGAGA-CTACGACAG----------  920
            .|||   |||      ||.|...||||..|.| ||..|||.|.||.||  .||| |.|..||||          
Sbjct 1496  CTAT---AGAGCACTCTTTTACCCCAACATACTCTAAATGACTGATCA--AAGATCAAAAACAGAAGAGCATTT  1564

Query  921  ---CT---------TTGTGTGTGTCCTG-GTGA-----GCCGA---------------GGAGGC--------TC  953
               ||         ||.|.||.|.|||| .|||     .||||               |||.||        ||
Sbjct 1565  ATACTCCATTCTTGTTTTTTGAGACCTGCTTGATTTATTCCGATTATTTAACACACAGGGACGCAACAGTGATC  1638

Query  954  CCAGAGTGTGTA-------------------------------------------------TGGTGTGGATCA-  977
            |||.||||||||                                                 |||||.|  ||| 
Sbjct 1639  CCAAAGTGTGTAAAGTTAAAGCCTTCAACTGCAGCTGAGGAGAGGGCAGGAATGGGGACGGTGGTGAG--TCAG  1710

Query  978  ----GAC-------------TCACTCAGGG-------CTCCCC-----------CT-----------------G  999
                |||             |.|| |||||       ||||||           ||                 |
Sbjct 1711  GAATGACAGGCAGGCAGCCATGAC-CAGGGCAGCCTCCTCCCCAGGGCCAGGGACTGGGGAGTGGCCTAAGGAG  1783

Query 1000  CATCACATCAGG--AG------GATGTTCATGGG---AGATTCATGCCCTT-ATCTAG--CAGGGAAGCCAAAG  1059
            ||..||.|.|||  ||      |.||...|.|||   |||..|.|.||||| ..||||  |.||  |||     
Sbjct 1784  CAGGACCTAAGGGTAGCCCAGAGCTGGGGAAGGGGGCAGAGACCTCCCCTTGGCCTAGGTCTGG--AGC-----  1850

Query 1060  ATGTTTTTTATTCAGAACT---------ATGTGGTGTCAG----------AGGGCCA-----------------  1097
                       ||||||.|         .||.||.|.|||          |||||||                 
Sbjct 1851  -----------TCAGAAGTGCCACATGCCTGAGGGGGCAGCGGCCTGGGAAGGGCCAGAGGCAGGGTCAGGAGA  1913

Query 1098  -----------------GCTGGAGGACAG-----------------------------------CAGCCTCTTG  1119
                             ||||| ||||||                                   |.|||.||  
Sbjct 1914  GCACCATTTCCTGGGGGGCTGG-GGACAGGGAGGTGCCCTATAGGAGAAGCCAGGAGGGGCCGTCTGCCCCT--  1984

Query 1120  GAGGT---GGATGGGC------------CAGCGATGAAGAA-----TGTGGAATTCA-AGG--CTCAGA----A  1166
            |||||   ||.|||||            ||||    |||||     ||.||.|..|| |||  ||.|||    |
Sbjct 1985  GAGGTGGGGGCTGGGCTGGAGCAGGCTGCAGC----AAGAAAGACCTGAGGCAGGCACAGGGCCTGAGAGCCCA  2054

Query 1167  GC-------------GAGGGCTGTGCACAGTTCACC----------GAGAAG--CTGACT--------------  1201
            ||             |.|||||   |.|||..||.|          |||.||  ||||||              
Sbjct 2055  GCTGCCTGGGTTCAGGGGGGCT---CCCAGGGCAGCCTGGCCCAGGGAGCAGTCCTGACTCTGCAGGGGATGCC  2125

Query 1202  ------------------------------------TCTTCT-----------GGAGCCTGTGTA---------  1219
                                                ||.|||           |||| |||.|.|         
Sbjct 2126  CAGCAAGGGGGGCTGCAGACCCCTCAGAGCCTCCCCTCCTCTCTCCCTGGAAAGGAG-CTGGGGAACCCATAGT  2198

Query 1220  ------CTGCGGAC--------------------ATGTCCCTG----------CT--GGAGCAGTCTCACAGCT  1255
                  |||.||||                    .|||.||||          ||  ||.|||.||.|.|    
Sbjct 2199  GCAAATCTGTGGACCACTCAGTTATGGAGGGAGGCTGTGCCTGAAGGTGGACACTGGGGTGCACTCCCTC----  2268

Query 1256  CACCAT----CCCTGTACC--------------------------------TGCAG------------------  1275
            ||||||    |||||.|||                                |||||                  
Sbjct 2269  CACCATCTCGCCCTGCACCGCTGTCCTCAGTACAGCCACTTCTCGTAAGAGTGCAGGCCATGGATGCCACCGTC  2342

Query 1276  -------------------TGCCTCTCCCAGAAAC-TGAG-----------ACA--------AGAAAGA-AAAC  1309
                               |||.||||    |||| ||||           |||        .|||.|| |.||
Sbjct 2343  GATCTGGGCTGACATGGTCTGCTTCTC----AAACTTGAGCTCCCCTGAGTACATCATGGACCGAAGGACAGAC  2412

Query 1310  ---------GCCCAC----TCCTGGATCTTCA--CATTGAACTCAATGGCTACATGTATGATTGGAACAGCA-G  1367
                     |||| |    ||||||     ||  |||   .||..|||.|.||   |||||  ||.|..||| |
Sbjct 2413  AGGCTGTGGGCCC-CGATATCCTGG-----CAGCCAT---GCTGGATGCCCAC---TATGA--GGTAGGGCACG  2472

Query 1368  AGTTTCTG--------------------------CCAAG-----------GA----------------------  1382
            |..|||||                          |||||           ||                      
Sbjct 2473  AACTTCTGAATGGACCCTTTGTCCTGGATGGAGCCCAAGACATCCTGCGTGATCTTCGCCTTATCCCCGTCGTT  2546

Query 1383  GAAATATTATGTCTGGCTGC---------------------------AGCACA---------------------  1408
            |||.||||.|.|||||||||                           |||.||                     
Sbjct 2547  GAAGTATTGTTTCTGGCTGCTGCTGCTCTTCTCCATGGCATCCAGTGAGCCCATGCCCTGGTACTTCTTGAGCT  2620

Query 1409  -------CTCTGAGAAAGAA--ACT-------------------------------------TATCCT------  1430
                   .|||||| |||||  |||                                     .|||.|      
Sbjct 2621  GCATTCCGTCTGAG-AAGAAGCACTCGCCGGGGGCCTCCATGGTGGCGGCCAGCAGGGAGCCCATCATCACTGT  2693

Query 1431  -----CTCCTA----------------CACA-------------------------------------------  1440
                 ||||||                ||||                                           
Sbjct 2694  GGAGGCTCCTAGGGCCAGGGCCTTGACCACATGCCCCATGGTCTGGATGCCACCATCGGCTATGATGGGCACAC  2767

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2768  CAAAGTTCTGGGTATGCTTGGCCACCTTGTACACAGCAGTGCCCTGGGGCTGACTGCAGGCTATCACTTCCTGG  2841

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2842  TTGATGTAGATGGAGCCGCGCAGTCCATGCCCCTGCCCAGCCCATCCACACCAGCGTCAATCAGGTTGTTGGCC  2915

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2916  TGGGCTGCTGTCACCACGTTCCCCCCAATCACCTGGAGGTGGGGTTACTTTTGTTTGATGTAATGCACCATGGC  2989

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2990  GATCTGATACACCGAGTTCCCTTGGGACGAGTCCAAGCCTATGACATTGACGCCTACCTGGGTGAGCAGGTCCA  3063

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 3064  GGTGGTATTTGTCATCCTCATGGGTACCCACAGCTGCCCCGCCCAGCAGCTGCTCATGGGAATCCTTGGAGGCC  3137

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 3138  ACAGGGTAGTCTCGGTTCTTCAGCGCGGTGCAGGTGATAATGGCCACCAGCTCATCGCGATCATTGACGATAGG  3211

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 3212  CAGCTTCCTTTCTTACTAAGCTGCAGGATCTCATTTGCCTCTTTCAACCTCACACTGCTGGAGCCACCACTAGC  3285

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 3286  TTGATCCTTGGCATCATCACCTCACTGAGGAGGGTGGTGTGGTCCTTCTCAGCAAGAAAGTCGATGTCTCGGGA  3359

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 3360  GGTGACGATGCCCACCAGCTTGCTGCCCATGGTACCCGTCTCAGTGATGGGGATGCCAGAGAAGCCATGACGCA  3433

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 3434  TCTTGGCCTCCAACACATCACCCACAGTGTGCAAGGGGCTCAGCACCACGGGGTGTGTGATAAAGCCCGGTTCA  3507

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 3508  AACTTCTTGACCTTCTGCACCTCACTGGCCTGGAACTCTGGGGTGCAGTTGTGGTGAATGAAACCAGTACCTCC  3581

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 3582  CATCAGAGCCATCACGATGGCCAGGTCGGCCTCTGTCACAGTGTCCATGGGGGAGGAGATCAGCGGCGTCTTCA  3655

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 3656  GAGTGACCATTGGGTCAGGGCTGAGGTCAGGTCCACCTCATCAGCTATGAAGTCTATGAATCCTGGGAGAATCA  3729

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 3730  AGAAGTCGTTGTAGTTCAAGGAGCAGGGACAAGTTACAGGAATGTTCTCCAAGCAGCAATCCAAAAGAGTCTCA  3803

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 3804  AGGATCCTTCAAATAACTTCAGGATGATAACACCCTATGCCCATTGTCCTGATCTGAAAATTCTTGGAAATTGT  3877

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 3878  TCCATGTGATTAACATGGAACTGCCTCTACTTAATCATTCTGAATGATTAAATCGTTTCATTTTCTAAATGTGT  3951

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 3952  TATAATGTGTTTAGCCCTTTCTTGTTGCTGTATGTTTAGATGCTTTCCAATCTTTTGTTACTACTAATAATGCT  4025

Query 1441  ----------------------------  1440
                                        
Sbjct 4026  ATAAAATAAATATCCTTGTACTTCTTTG  4053

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