Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_02030
- Subject:
- XR_001739017.2
- Aligned Length:
- 4172
- Identities:
- 1166
- Gaps:
- 2851
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACAAGCCATAGCAGGAAACAGCGAGCTTGCAGCCTCACCGACGAGTCTCAACTAAAAGGGACTCCCGGAGCTAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGGTGGGGACTCGGCCTCACACAGTGAGTGCCGGCTATTGGACTTTTGTCCAGTGACAGCTGAGACAACAAGGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCACGGGAGGAGGTGTAGGAGAGAAGCGCCGCGAACAGCGATCGCCCAGCACCAAGTCCGCTTCCAGGCTTTCG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GTTTCTTTGCCTCCATCTTGGGTGCGCCTTCCCGGCGTCTAGGGGAGCGAAGGCTGAGGTGGCAGCGGCAGGAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGTCCGGCCGCGACAGGACGAACTCCCCCACTGGAAAGGATTCTGAAAGAAATGAAGTCAGCCCTCAGAAATGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AGTTGACTGCCTGCTGGCTTTCTGTTGACTGGCCCGGAGCTGTACTGCAAGACCCTTGTGAGCTTCCCTAGTCT 444
Query 1 ---------ATGTCTGCTGAAGTCATCCATCAGGTTGAAGAAGCACTTGATACAGATGAGAAGGAGATGCTGCT 65
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AAGAGTAGGATGTCTGCTGAAGTCATCCATCAGGTTGAAGAAGCACTTGATACAGATGAGAAGGAGATGCTGCT 518
Query 66 CTTTTTGTGCCGGGATGTTGCTATAGATGTGGTTCCACCTAATGTCAGGGACCTTCTGGATATTTTACGGGAAA 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CTTTTTGTGCCGGGATGTTGCTATAGATGTGGTTCCACCTAATGTCAGGGACCTTCTGGATATTTTACGGGAAA 592
Query 140 GAGGTAAGCTGTCTGTCGGGGACTTGGCTGAACTGCTCTACAGAGTGAGGCGATTTGACCTGCTCAAACGTATC 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GAGGTAAGCTGTCTGTCGGGGACTTGGCTGAACTGCTCTACAGAGTGAGGCGATTTGACCTGCTCAAACGTATC 666
Query 214 TTGAAGATGGACAGAAAAGCTGTGGAGACCCACCTGCTCAGGAACCCTCACCTTGTTTCGGACTATAGAGTGCT 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TTGAAGATGGACAGAAAAGCTGTGGAGACCCACCTGCTCAGGAACCCTCACCTTGTTTCGGACTATAGAGTGCT 740
Query 288 GATGGCAGAGATTGGTGAGGATTTGGATAAATCTGATGTGTCCTCATTAATTTTCCTCATGAAGGATTACATGG 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GATGGCAGAGATTGGTGAGGATTTGGATAAATCTGATGTGTCCTCATTAATTTTCCTCATGAAGGATTACATGG 814
Query 362 GCCGAGGCAAGATAAGCAAGGAGAAGAGTTTCTTGGACCTTGTGGTTGAGTTGGAGAAACTAAATCTGGTTGCC 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GCCGAGGCAAGATAAGCAAGGAGAAGAGTTTCTTGGACCTTGTGGTTGAGTTGGAGAAACTAAATCTGGTTGCC 888
Query 436 CCAGATCAACTGGATTTATTAGAAAAATGCCTAAAGAACATCCACAGAATAGACCTGAAGACAAAAATCCAGAA 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CCAGATCAACTGGATTTATTAGAAAAATGCCTAAAGAACATCCACAGAATAGACCTGAAGACAAAAATCCAGAA 962
Query 510 GTACAAGCAGTCTGTTCAAGGA--GCAGGGACAAGTTACAGGAATGTTCTCC-AAGC----------------- 563
||||||||||||||.| ||| |.|.||| ||..|.||| .|| ||||
Sbjct 963 GTACAAGCAGTCTGGT---GGATGGAATGGA------ACCTGGATG---ACCAAAGCCTCCTTTAGCTTGTGGC 1024
Query 564 -AGCAATCCAAAAGAGTC---TCAAGGATCCTTCAAAT------------AAC----------------TTCAG 605
||.|||| |.||| |.| .||.|||||.|| ||| ||||.
Sbjct 1025 TAGAAATC-----GCGTCCCTTTA--TATTCTTCATATCCCAGATCTGCCAACTCCATTGCCCTGTATATTCAT 1091
Query 606 G----CTCCATAATG-GGAGAAG-------TAA------AG-----AACAAAGACTTAAGGA-----ACAGCTT 651
| ||.||.|||| .|..||| ||| || ||.|||||.|...||| ||||..|
Sbjct 1092 GATCTCTGCAAAATGCTGCCAAGCAGTTCTTAACATTTCAGTCTTCAAGAAAGAATCTGGGATCTGCACAGGCT 1165
Query 652 GGCGCTCAACAAGAACCAGTGAAGAAATCCATTCAGG------------AATCAGAA----------------- 696
||| |||.|.|..|| |||||||| |..|.|||
Sbjct 1166 GGC--------AGAGCTATGGA-------CATTCAGGGGTTTTGCATGTATGCTGAACCCTACTGCCTTGCTCT 1224
Query 697 GCTTTTTTGCCTCAGA-----------------------------------GCATACCT------GAAGAG--- 726
|.|.|||.||||||.| .||||||| .|.|.|
Sbjct 1225 GGTATTTGGCCTCACAACCACTGTCCAACTTCGGGTGATGTCACTTGGGTCTCATACCTTCCTTGCATGTGTCC 1298
Query 727 --AGAT--ACAA--------GATG---AAGAGCAAGCCCCTAGGA-ATCTGCC-TGATAA-------TCGATT- 775
||.| |||| .||| ||||||| |.|..|| .|||.|| |||||| ..||||
Sbjct 1299 CAAGTTTCACAAAACCTCCTTATGGAAAAGAGCA----CATTCGATTTCTTCCTTGATAAAAGGGACCAGATTC 1368
Query 776 GCATTGG-----------------------CAATGAGACAGAGCTTCTTCGAGACACCTTCA-CTTC--CCTGG 823
.|||||| ||.|| ||||..|||| ||| |.|| |.|||
Sbjct 1369 ACATTGGCCTTCTGCTTTACTTGCATTCCTCATTG----------TCTTTTAGAC----TCAGCCTCAGCTTGG 1428
Query 824 GCTATG-----AAGT---------CCAGAAATTCTTGCATCTCAGTAT-----GCATGG--------------T 864
|||.|| |||| ||| |.|||||.|||..| |||||| |
Sbjct 1429 GCTTTGTTAGCAAGTTCACTGCCACCA-------TAGCATCACAGCCTAAAGGGCATGGCTGAGACTCATTGAT 1495
Query 865 ATATCCCAGA------TTCTTGGCCAATTTGC-CTGTATGCCCGAGCACCGAGA-CTACGACAG---------- 920
.||| ||| ||.|...||||..|.| ||..|||.|.||.|| .||| |.|..||||
Sbjct 1496 CTAT---AGAGCACTCTTTTACCCCAACATACTCTAAATGACTGATCA--AAGATCAAAAACAGAAGAGCATTT 1564
Query 921 ---CT---------TTGTGTGTGTCCTG-GTGA-----GCCGA---------------GGAGGC--------TC 953
|| ||.|.||.|.|||| .||| .|||| |||.|| ||
Sbjct 1565 ATACTCCATTCTTGTTTTTTGAGACCTGCTTGATTTATTCCGATTATTTAACACACAGGGACGCAACAGTGATC 1638
Query 954 CCAGAGTGTGTA-------------------------------------------------TGGTGTGGATCA- 977
|||.|||||||| |||||.| |||
Sbjct 1639 CCAAAGTGTGTAAAGTTAAAGCCTTCAACTGCAGCTGAGGAGAGGGCAGGAATGGGGACGGTGGTGAG--TCAG 1710
Query 978 ----GAC-------------TCACTCAGGG-------CTCCCC-----------CT-----------------G 999
||| |.|| ||||| |||||| || |
Sbjct 1711 GAATGACAGGCAGGCAGCCATGAC-CAGGGCAGCCTCCTCCCCAGGGCCAGGGACTGGGGAGTGGCCTAAGGAG 1783
Query 1000 CATCACATCAGG--AG------GATGTTCATGGG---AGATTCATGCCCTT-ATCTAG--CAGGGAAGCCAAAG 1059
||..||.|.||| || |.||...|.||| |||..|.|.||||| ..|||| |.|| |||
Sbjct 1784 CAGGACCTAAGGGTAGCCCAGAGCTGGGGAAGGGGGCAGAGACCTCCCCTTGGCCTAGGTCTGG--AGC----- 1850
Query 1060 ATGTTTTTTATTCAGAACT---------ATGTGGTGTCAG----------AGGGCCA----------------- 1097
||||||.| .||.||.|.||| |||||||
Sbjct 1851 -----------TCAGAAGTGCCACATGCCTGAGGGGGCAGCGGCCTGGGAAGGGCCAGAGGCAGGGTCAGGAGA 1913
Query 1098 -----------------GCTGGAGGACAG-----------------------------------CAGCCTCTTG 1119
||||| |||||| |.|||.||
Sbjct 1914 GCACCATTTCCTGGGGGGCTGG-GGACAGGGAGGTGCCCTATAGGAGAAGCCAGGAGGGGCCGTCTGCCCCT-- 1984
Query 1120 GAGGT---GGATGGGC------------CAGCGATGAAGAA-----TGTGGAATTCA-AGG--CTCAGA----A 1166
||||| ||.||||| |||| ||||| ||.||.|..|| ||| ||.||| |
Sbjct 1985 GAGGTGGGGGCTGGGCTGGAGCAGGCTGCAGC----AAGAAAGACCTGAGGCAGGCACAGGGCCTGAGAGCCCA 2054
Query 1167 GC-------------GAGGGCTGTGCACAGTTCACC----------GAGAAG--CTGACT-------------- 1201
|| |.||||| |.|||..||.| |||.|| ||||||
Sbjct 2055 GCTGCCTGGGTTCAGGGGGGCT---CCCAGGGCAGCCTGGCCCAGGGAGCAGTCCTGACTCTGCAGGGGATGCC 2125
Query 1202 ------------------------------------TCTTCT-----------GGAGCCTGTGTA--------- 1219
||.||| |||| |||.|.|
Sbjct 2126 CAGCAAGGGGGGCTGCAGACCCCTCAGAGCCTCCCCTCCTCTCTCCCTGGAAAGGAG-CTGGGGAACCCATAGT 2198
Query 1220 ------CTGCGGAC--------------------ATGTCCCTG----------CT--GGAGCAGTCTCACAGCT 1255
|||.|||| .|||.|||| || ||.|||.||.|.|
Sbjct 2199 GCAAATCTGTGGACCACTCAGTTATGGAGGGAGGCTGTGCCTGAAGGTGGACACTGGGGTGCACTCCCTC---- 2268
Query 1256 CACCAT----CCCTGTACC--------------------------------TGCAG------------------ 1275
|||||| |||||.||| |||||
Sbjct 2269 CACCATCTCGCCCTGCACCGCTGTCCTCAGTACAGCCACTTCTCGTAAGAGTGCAGGCCATGGATGCCACCGTC 2342
Query 1276 -------------------TGCCTCTCCCAGAAAC-TGAG-----------ACA--------AGAAAGA-AAAC 1309
|||.|||| |||| |||| ||| .|||.|| |.||
Sbjct 2343 GATCTGGGCTGACATGGTCTGCTTCTC----AAACTTGAGCTCCCCTGAGTACATCATGGACCGAAGGACAGAC 2412
Query 1310 ---------GCCCAC----TCCTGGATCTTCA--CATTGAACTCAATGGCTACATGTATGATTGGAACAGCA-G 1367
|||| | |||||| || ||| .||..|||.|.|| ||||| ||.|..||| |
Sbjct 2413 AGGCTGTGGGCCC-CGATATCCTGG-----CAGCCAT---GCTGGATGCCCAC---TATGA--GGTAGGGCACG 2472
Query 1368 AGTTTCTG--------------------------CCAAG-----------GA---------------------- 1382
|..||||| ||||| ||
Sbjct 2473 AACTTCTGAATGGACCCTTTGTCCTGGATGGAGCCCAAGACATCCTGCGTGATCTTCGCCTTATCCCCGTCGTT 2546
Query 1383 GAAATATTATGTCTGGCTGC---------------------------AGCACA--------------------- 1408
|||.||||.|.||||||||| |||.||
Sbjct 2547 GAAGTATTGTTTCTGGCTGCTGCTGCTCTTCTCCATGGCATCCAGTGAGCCCATGCCCTGGTACTTCTTGAGCT 2620
Query 1409 -------CTCTGAGAAAGAA--ACT-------------------------------------TATCCT------ 1430
.|||||| ||||| ||| .|||.|
Sbjct 2621 GCATTCCGTCTGAG-AAGAAGCACTCGCCGGGGGCCTCCATGGTGGCGGCCAGCAGGGAGCCCATCATCACTGT 2693
Query 1431 -----CTCCTA----------------CACA------------------------------------------- 1440
|||||| ||||
Sbjct 2694 GGAGGCTCCTAGGGCCAGGGCCTTGACCACATGCCCCATGGTCTGGATGCCACCATCGGCTATGATGGGCACAC 2767
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 2768 CAAAGTTCTGGGTATGCTTGGCCACCTTGTACACAGCAGTGCCCTGGGGCTGACTGCAGGCTATCACTTCCTGG 2841
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 2842 TTGATGTAGATGGAGCCGCGCAGTCCATGCCCCTGCCCAGCCCATCCACACCAGCGTCAATCAGGTTGTTGGCC 2915
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 2916 TGGGCTGCTGTCACCACGTTCCCCCCAATCACCTGGAGGTGGGGTTACTTTTGTTTGATGTAATGCACCATGGC 2989
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 2990 GATCTGATACACCGAGTTCCCTTGGGACGAGTCCAAGCCTATGACATTGACGCCTACCTGGGTGAGCAGGTCCA 3063
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 3064 GGTGGTATTTGTCATCCTCATGGGTACCCACAGCTGCCCCGCCCAGCAGCTGCTCATGGGAATCCTTGGAGGCC 3137
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 3138 ACAGGGTAGTCTCGGTTCTTCAGCGCGGTGCAGGTGATAATGGCCACCAGCTCATCGCGATCATTGACGATAGG 3211
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 3212 CAGCTTCCTTTCTTACTAAGCTGCAGGATCTCATTTGCCTCTTTCAACCTCACACTGCTGGAGCCACCACTAGC 3285
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 3286 TTGATCCTTGGCATCATCACCTCACTGAGGAGGGTGGTGTGGTCCTTCTCAGCAAGAAAGTCGATGTCTCGGGA 3359
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 3360 GGTGACGATGCCCACCAGCTTGCTGCCCATGGTACCCGTCTCAGTGATGGGGATGCCAGAGAAGCCATGACGCA 3433
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 3434 TCTTGGCCTCCAACACATCACCCACAGTGTGCAAGGGGCTCAGCACCACGGGGTGTGTGATAAAGCCCGGTTCA 3507
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 3508 AACTTCTTGACCTTCTGCACCTCACTGGCCTGGAACTCTGGGGTGCAGTTGTGGTGAATGAAACCAGTACCTCC 3581
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 3582 CATCAGAGCCATCACGATGGCCAGGTCGGCCTCTGTCACAGTGTCCATGGGGGAGGAGATCAGCGGCGTCTTCA 3655
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 3656 GAGTGACCATTGGGTCAGGGCTGAGGTCAGGTCCACCTCATCAGCTATGAAGTCTATGAATCCTGGGAGAATCA 3729
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 3730 AGAAGTCGTTGTAGTTCAAGGAGCAGGGACAAGTTACAGGAATGTTCTCCAAGCAGCAATCCAAAAGAGTCTCA 3803
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 3804 AGGATCCTTCAAATAACTTCAGGATGATAACACCCTATGCCCATTGTCCTGATCTGAAAATTCTTGGAAATTGT 3877
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 3878 TCCATGTGATTAACATGGAACTGCCTCTACTTAATCATTCTGAATGATTAAATCGTTTCATTTTCTAAATGTGT 3951
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 3952 TATAATGTGTTTAGCCCTTTCTTGTTGCTGTATGTTTAGATGCTTTCCAATCTTTTGTTACTACTAATAATGCT 4025
Query 1441 ---------------------------- 1440
Sbjct 4026 ATAAAATAAATATCCTTGTACTTCTTTG 4053
