Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_02030
Subject:
XR_002959354.1
Aligned Length:
2897
Identities:
1357
Gaps:
1540

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TAGCAGGAAACAGCGAGCTTGCAGCCTCACCGACGAGTCTCAACTAAAAGGGACTCCCGGAGCTAGGGGTGGGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ACTCGGCCTCACACAGTGAGTGCCGGCTATTGGACTTTTGTCCAGTGACAGCTGAGACAACAAGGACCACGGGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGAGGTGTAGGAGAGAAGCGCCGCGAACAGCGATCGCCCAGCACCAAGTCCGCTTCCAGGCTTTCGGTTTCTTT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCCTCCATCTTGGGTGCGCCTTCCCGGCGTCTAGGGGAGCGAAGGCTGAGGTGGCAGCGGCAGGAGAGTCCGGC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CGCGACAGGACGAACTCCCCCACTGGAAAGGATTCTGAAAGAAATGAAGTCAGCCCTCAGAAATGAAGTTGACT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GCCTGCTGGCTTTCTGTTGACTGGCCCGGAGCTGTACTGCAAGACCCTTGTGAGCTTCCCTAGTCTAAGAGTAG  444

Query    1  -ATGTCTGCTGAAGTCATCCATCAGGTTGAAGAAGCACTTGATACAGATGAGAAGGAGATGCTGCTCTTTTTGT  73
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GATGTCTGCTGAAGTCATCCATCAGGTTGAAGAAGCACTTGATACAGATGAGAAGGAGATGCTGCTCTTTTTGT  518

Query   74  GCCGGGATGTTGCTATAGATGTGGTTCCACCTAATGTCAGGGACCTTCTGGATATTTTACGGGAAAGAGGTAAG  147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GCCGGGATGTTGCTATAGATGTGGTTCCACCTAATGTCAGGGACCTTCTGGATATTTTACGGGAAAGAGGTAAG  592

Query  148  CTGTCTGTCGGGGACTTGGCTGAACTGCTCTACAGAGTGAGGCGATTTGACCTGCTCAAACGTATCTTGAAGAT  221
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CTGTCTGTCGGGGACTTGGCTGAACTGCTCTACAGAGTGAGGCGATTTGACCTGCTCAAACGTATCTTGAAGAT  666

Query  222  GGACAGAAAAGCTGTGGAGACCCACCTGCTCAGGAACCCTCACCTTGTTTCGGACTATAGAGTGCTGATGGCAG  295
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GGACAGAAAAGCTGTGGAGACCCACCTGCTCAGGAACCCTCACCTTGTTTCGGACTATAGAGTGCTGATGGCAG  740

Query  296  AGATTGGTGAGGATTTGGATAAATCTGATGTGTCCTCATTAATTTTCCTCATGAAGGATTACATGGGCCGAGGC  369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  AGATTGGTGAGGATTTGGATAAATCTGATGTGTCCTCATTAATTTTCCTCATGAAGGATTACATGGGCCGAGGC  814

Query  370  AAGATAAGCAAGGAGAAGAGTTTCTTGGACCTTGTGGTTGAGTTGGAGAAACTAAATCTGGTTGCCCCAGATCA  443
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  AAGATAAGCAAGGAGAAGAGTTTCTTGGACCTTGTGGTTGAGTTGGAGAAACTAAATCTGGTTGCCCCAGATCA  888

Query  444  ACTGGATTTATTAGAAAAATGCCTAAAGAACATCCACAGAATAGACCTGAAGACAAAAATCCAGAAGTACAAGC  517
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  ACTGGATTTATTAGAAAAATGCCTAAAGAACATCCACAGAATAGACCTGAAGACAAAAATCCAGAAGTACAAGC  962

Query  518  AGTCTGTTCAAGGAGCAGGGACAAGTTACAGGAATGTTCTCCAAGCAGCAATCCAAAAGAGTCTCAAGGATCCT  591
            |||||                                                                     
Sbjct  963  AGTCT---------------------------------------------------------------------  967

Query  592  TCAAATAACTTCAGGCTCCATAATGGGAGAAGTAAAGAACAAAGACTTAAGGAACAGCTTGGCGCTCAACAAGA  665
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  968  --------------GCTCCATAATGGGAGAAGTAAAGAACAAAGACTTAAGGAACAGCTTGGCGCTCAACAAGA  1027

Query  666  ACCAGTGAAGAAATCCATTCAGGAATCAGAAGCTTTTTTGCCTCAGAGCATACCTGAAGAGAGATACAAGATGA  739
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028  ACCAGTGAAGAAATCCATTCAGGAATCAGAAGCTTTTTTGCCTCAGAGCATACCTGAAGAGAGATACAAGATGA  1101

Query  740  AGAGCAAGCCCCTAGGAATCTGCCTGATAATCGATTGCATTGGCAATGAGACAGAGCTTCTTCGAGACACCTTC  813
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102  AGAGCAAGCCCCTAGGAATCTGCCTGATAATCGATTGCATTGGCAATGAGACAGAGCTTCTTCGAGACACCTTC  1175

Query  814  ACTTCCCTGGGCTATGAAGTCCAGAAATTCTTGCATCTCAGTATGCATGGTATATCCCAGATTCTTGGCCAATT  887
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176  ACTTCCCTGGGCTATGAAGTCCAGAAATTCTTGCATCTCAGTATGCATGGTATATCCCAGATTCTTGGCCAATT  1249

Query  888  TGCCTGTATGCCCGAGCACCGAGACTACGACAGCTTTGTGTGTGTCCTGGTGAGCCGAGGAGGCTCCCAGAGTG  961
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250  TGCCTGTATGCCCGAGCACCGAGACTACGACAGCTTTGTGTGTGTCCTGGTGAGCCGAGGAGGCTCCCAGAGTG  1323

Query  962  TGTATGGTGTGGATCAGACTCACTCAGGGCTCCCCCTGCATCACATCAGGAGGATGTTCATGGGAGATTCATGC  1035
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324  TGTATGGTGTGGATCAGACTCACTCAGGGCTCCCCCTGCATCACATCAGGAGGATGTTCATGGGAGATTCATGC  1397

Query 1036  CCTTATCTAGCAGGGAAGCCAAAGATGTTTTTTATTCAGAACTATGTGGTGTCAGAGGGCCAGCTGGAGGACAG  1109
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398  CCTTATCTAGCAGGGAAGCCAAAGATGTTTTTTATTCAGAACTATGTGGTGTCAGAGGGCCAGCTGGAGGACAG  1471

Query 1110  CAGCCTCTTGGAGGTGGATGGGCCAGCGATGAAGAATGTGGAATTCAAGGCTCAGAAGCGAGGGCTGTGCACAG  1183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1472  CAGCCTCTTGGAGGTGGATGGGCCAGCGATGAAGAATGTGGAATTCAAGGCTCAGAAGCGAGGGCTGTGCACAG  1545

Query 1184  TTCACCGAGAAGCTGACTTCTTCTGGAGCCTGTGTACTGCGGACATGTCCCTGCTGGAGCAGTCTCACAGCTCA  1257
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546  TTCACCGAGAAGCTGACTTCTTCTGGAGCCTGTGTACTGCGGACATGTCCCTGCTGGAGCAGTCTCACAGCTCA  1619

Query 1258  CCATCCCTGTACCTGCAGTGCCTCTCCCAGAAACTGAGACAAGAAAGAAAACGCCCACTCCTGGATCTTCACAT  1331
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620  CCATCCCTGTACCTGCAGTGCCTCTCCCAGAAACTGAGACAAGAAAGAAAACGCCCACTCCTGGATCTTCACAT  1693

Query 1332  TGAACTCAATGGCTACATGTATGATTGGAACAGCAGAGTTTCTGCCAAGGAGAAATATTATGTCTGGCTGCAGC  1405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1694  TGAACTCAATGGCTACATGTATGATTGGAACAGCAGAGTTTCTGCCAAGGAGAAATATTATGTCTGGCTGCAGC  1767

Query 1406  ACACTCTGAGAAAGAAACTTATCCTCTCCTACACA---------------------------------------  1440
            |||||||||||||||||||||||||||||||||||                                       
Sbjct 1768  ACACTCTGAGAAAGAAACTTATCCTCTCCTACACATAAGAAACCAAAAGGCTGGGCGTAGTGGCTCACACCTGT  1841

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 1842  AATCCCAGCACTTTGGGAGGCCAAGGAGGGCAGATCACTTCAGGTCAGGAGTTCGAGACCAGCCTGGCCAACAT  1915

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 1916  GAGTCTGAAAAGTGTCGAAGAGACAGTTTTCAGGAACAACAAGCAATTATTCCTACTTTCCAAGTTATTTTGAT  1989

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 1990  GCCATGGTGGCTCATACCTATAATCTGAGTACTTTGGGAGGCTGAGGTGGACTGATCACTTGAGCCCAGGAGTT  2063

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2064  TGAGACCAGCCTGGGCAACATAGCAAGACTCCATCTCTACAAAAAAAGACAAAATTTAGCTGAGCGTGGTGGCG  2137

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2138  TGTTCCTGTAGTCCCAGCTACTTGGGAGGCTGAAGTGAGTGGATCCCCTGAGCCCAGAGAGGTCAAGGTTGTGA  2211

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2212  TGAGCTGTGATCACACCACTGCACTTCAGCATGGGAGACAGAGTGAGACCCTGTTTCAGAAAAAATAAATAAAT  2285

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2286  AAAACCACCAGCACCACAAACAACAACAAAAAGTTATTTTGTACTTGTTTTGAGCACAGGACTCCTGAGGGTAT  2359

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2360  CTTTGCATTTAATATTACATAGGGGTGCCAGTGGGAAGTAATGTGTATGCTTGGCCTCATGAGCTAAAACCCTG  2433

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2434  TGTTAATTATGACAGAAGGAAAGTGTGTGAGAGAGATCTTAACTACCTAGCAGCTCTAGCTGCCATCTTGAACC  2507

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2508  ATGAAGATACGGGCCACACGTAGGGGTAGCTGGGTAGTGAGCAGCAAGAAGCCTTGTTGGATGAGGGCACGAAG  2581

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2582  GAGCAGAATCACTGGAATCACTGTGTCAGCCCTAATTACCTACCTCTGGACTTTTATGTGAGGGGAAAAAAAAT  2655

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2656  TGACAGTTTATATTTATCTCAACCTAGTTAACCCAAGTGATGCATTGTTATGAGATTAAAATGTTTGGAGGCCG  2729

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2730  GGTGCGGTGGCTCACGCCTATAATCCCAGCCCTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAGGAGATCA  2803

Query 1441  -----------  1440
                       
Sbjct 2804  AGACCATCCTG  2814