Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_02030
Subject:
XR_002959355.1
Aligned Length:
2598
Identities:
1241
Gaps:
1322

Alignment

Query    1  ATGTCTGCTGAAGTCATCCATCAGGTTGAAGAAGCACTTGATACAGATG----AGAAGGAGATGCTGCTCTTTT  70
                                                      |||.|.|    ||.||||.|            
Sbjct    1  ------------------------------------------ACACAAGCCATAGCAGGAAA------------  20

Query   71  TGTGCCGGGATGTTGC-----TATAGATGTGGTTC-CACCTAATGTCAGGGACCTTCTGGATATTTTACGGGAA  138
                |.|.||..||||     .|..||.|.|  || ||.||||   .||||| ||.|.|||          |..
Sbjct   21  ----CAGCGAGCTTGCAGCCTCACCGACGAG--TCTCAACTAA---AAGGGA-CTCCCGGA----------GCT  74

Query  139  AGAGGTAAGCTGTCTGTCGGGGACTTGGCTGAACTGCTCTACAGAGTGA-----GGCGATTTGAC---------  198
            ||.|||            |||||||.|||       ||| |||.|||||     |||.|||.|||         
Sbjct   75  AGGGGT------------GGGGACTCGGC-------CTC-ACACAGTGAGTGCCGGCTATTGGACTTTTGTCCA  128

Query  199  ----CTGCTCAAACGTATCTTGAAGATGGAC----AGAAAAGCTGT-GGAGA----------------------  241
                |.|||.|.||        ||.|.||||    .||..||.||| |||||                      
Sbjct  129  GTGACAGCTGAGAC--------AACAAGGACCACGGGAGGAGGTGTAGGAGAGAAGCGCCGCGAACAGCGATCG  194

Query  242  CCCA---------CCTGCT--CAGGAAC--------------CCT-CACCTTG-------TTTC----------  272
            ||||         || |||  ||||  |              ||| ||.||||       .|||          
Sbjct  195  CCCAGCACCAAGTCC-GCTTCCAGG--CTTTCGGTTTCTTTGCCTCCATCTTGGGTGCGCCTTCCCGGCGTCTA  265

Query  273  ------------------------------------------------GGACTATAGAGTGCTGATGGCAGAGA  298
                                                            ||||    ||||||||||||||||||
Sbjct  266  GGGGAGCGAAGGCTGAGGTGGCAGCGGCAGGAGAGTCCGGCCGCGACAGGAC----GAGTGCTGATGGCAGAGA  335

Query  299  TTGGTGAGGATTTGGATAAATCTGATGTGTCCTCATTAATTTTCCTCATGAAGGATTACATGGGCCGAGGCAAG  372
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  336  TTGGTGAGGATTTGGATAAATCTGATGTGTCCTCATTAATTTTCCTCATGAAGGATTACATGGGCCGAGGCAAG  409

Query  373  ATAAGCAAGGAGAAGAGTTTCTTGGACCTTGTGGTTGAGTTGGAGAAACTAAATCTGGTTGCCCCAGATCAACT  446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  410  ATAAGCAAGGAGAAGAGTTTCTTGGACCTTGTGGTTGAGTTGGAGAAACTAAATCTGGTTGCCCCAGATCAACT  483

Query  447  GGATTTATTAGAAAAATGCCTAAAGAACATCCACAGAATAGACCTGAAGACAAAAATCCAGAAGTACAAGCAGT  520
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  484  GGATTTATTAGAAAAATGCCTAAAGAACATCCACAGAATAGACCTGAAGACAAAAATCCAGAAGTACAAGCAGT  557

Query  521  CTGTTCAAGGAGCAGGGACAAGTTACAGGAATGTTCTCCAAGCAGCAATCCAAAAGAGTCTCAAGGATCCTTCA  594
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  558  CTGTTCAAGGAGCAGGGACAAGTTACAGGAATGTTCTCCAAGCAGCAATCCAAAAGAGTCTCAAGGATCCTTCA  631

Query  595  AATAACTTCAGGCTCCATAATGGGAGAAGTAAAGAACAAAGACTTAAGGAACAGCTTGGCGCTCAACAAGAACC  668
            ||||||||||||                                                       |||||||
Sbjct  632  AATAACTTCAGG-------------------------------------------------------AAGAACC  650

Query  669  AGTGAAGAAATCCATTCAGGAATCAGAAGCTTTTTTGCCTCAGAGCATACCTGAAGAGAGATACAAGATGAAGA  742
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  651  AGTGAAGAAATCCATTCAGGAATCAGAAGCTTTTTTGCCTCAGAGCATACCTGAAGAGAGATACAAGATGAAGA  724

Query  743  GCAAGCCCCTAGGAATCTGCCTGATAATCGATTGCATTGGCAATGAGACAGAGCTTCTTCGAGACACCTTCACT  816
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  725  GCAAGCCCCTAGGAATCTGCCTGATAATCGATTGCATTGGCAATGAGACAGAGCTTCTTCGAGACACCTTCACT  798

Query  817  TCCCTGGGCTATGAAGTCCAGAAATTCTTGCATCTCAGTATGCATGGTATATCCCAGATTCTTGGCCAATTTGC  890
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  799  TCCCTGGGCTATGAAGTCCAGAAATTCTTGCATCTCAGTATGCATGGTATATCCCAGATTCTTGGCCAATTTGC  872

Query  891  CTGTATGCCCGAGCACCGAGACTACGACAGCTTTGTGTGTGTCCTGGTGAGCCGAGGAGGCTCCCAGAGTGTGT  964
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  873  CTGTATGCCCGAGCACCGAGACTACGACAGCTTTGTGTGTGTCCTGGTGAGCCGAGGAGGCTCCCAGAGTGTGT  946

Query  965  ATGGTGTGGATCAGACTCACTCAGGGCTCCCCCTGCATCACATCAGGAGGATGTTCATGGGAGATTCATGCCCT  1038
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  947  ATGGTGTGGATCAGACTCACTCAGGGCTCCCCCTGCATCACATCAGGAGGATGTTCATGGGAGATTCATGCCCT  1020

Query 1039  TATCTAGCAGGGAAGCCAAAGATGTTTTTTATTCAGAACTATGTGGTGTCAGAGGGCCAGCTGGAGGACAGCAG  1112
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021  TATCTAGCAGGGAAGCCAAAGATGTTTTTTATTCAGAACTATGTGGTGTCAGAGGGCCAGCTGGAGGACAGCAG  1094

Query 1113  CCTCTTGGAGGTGGATGGGCCAGCGATGAAGAATGTGGAATTCAAGGCTCAGAAGCGAGGGCTGTGCACAGTTC  1186
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1095  CCTCTTGGAGGTGGATGGGCCAGCGATGAAGAATGTGGAATTCAAGGCTCAGAAGCGAGGGCTGTGCACAGTTC  1168

Query 1187  ACCGAGAAGCTGACTTCTTCTGGAGCCTGTGTACTGCGGACATGTCCCTGCTGGAGCAGTCTCACAGCTCACCA  1260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169  ACCGAGAAGCTGACTTCTTCTGGAGCCTGTGTACTGCGGACATGTCCCTGCTGGAGCAGTCTCACAGCTCACCA  1242

Query 1261  TCCCTGTACCTGCAGTGCCTCTCCCAGAAACTGAGACAAGAAAGAAAACGCCCACTCCTGGATCTTCACATTGA  1334
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243  TCCCTGTACCTGCAGTGCCTCTCCCAGAAACTGAGACAAGAAAGAAAACGCCCACTCCTGGATCTTCACATTGA  1316

Query 1335  ACTCAATGGCTACATGTATGATTGGAACAGCAGAGTTTCTGCCAAGGAGAAATATTATGTCTGGCTGCAGCACA  1408
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317  ACTCAATGGCTACATGTATGATTGGAACAGCAGAGTTTCTGCCAAGGAGAAATATTATGTCTGGCTGCAGCACA  1390

Query 1409  CTCTGAGAAAGAAACTTATCCTCTCCTACACA------------------------------------------  1440
            ||||||||||||||||||||||||||||||||                                          
Sbjct 1391  CTCTGAGAAAGAAACTTATCCTCTCCTACACATAAGAAACCAAAAGGCTGGGCGTAGTGGCTCACACCTGTAAT  1464

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 1465  CCCAGCACTTTGGGAGGCCAAGGAGGGCAGATCACTTCAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGAG  1538

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 1539  TCTGAAAAGTGTCGAAGAGACAGTTTTCAGGAACAACAAGCAATTATTCCTACTTTCCAAGTTATTTTGATGCC  1612

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 1613  ATGGTGGCTCATACCTATAATCTGAGTACTTTGGGAGGCTGAGGTGGACTGATCACTTGAGCCCAGGAGTTTGA  1686

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 1687  GACCAGCCTGGGCAACATAGCAAGACTCCATCTCTACAAAAAAAGACAAAATTTAGCTGAGCGTGGTGGCGTGT  1760

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 1761  TCCTGTAGTCCCAGCTACTTGGGAGGCTGAAGTGAGTGGATCCCCTGAGCCCAGAGAGGTCAAGGTTGTGATGA  1834

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 1835  GCTGTGATCACACCACTGCACTTCAGCATGGGAGACAGAGTGAGACCCTGTTTCAGAAAAAATAAATAAATAAA  1908

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 1909  ACCACCAGCACCACAAACAACAACAAAAAGTTATTTTGTACTTGTTTTGAGCACAGGACTCCTGAGGGTATCTT  1982

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 1983  TGCATTTAATATTACATAGGGGTGCCAGTGGGAAGTAATGTGTATGCTTGGCCTCATGAGCTAAAACCCTGTGT  2056

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2057  TAATTATGACAGAAGGAAAGTGTGTGAGAGAGATCTTAACTACCTAGCAGCTCTAGCTGCCATCTTGAACCATG  2130

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2131  AAGATACGGGCCACACGTAGGGGTAGCTGGGTAGTGAGCAGCAAGAAGCCTTGTTGGATGAGGGCACGAAGGAG  2204

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2205  CAGAATCACTGGAATCACTGTGTCAGCCCTAATTACCTACCTCTGGACTTTTATGTGAGGGGAAAAAAAATTGA  2278

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2279  CAGTTTATATTTATCTCAACCTAGTTAACCCAAGTGATGCATTGTTATGAGATTAAAATGTTTGGAGGCCGGGT  2352

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2353  GCGGTGGCTCACGCCTATAATCCCAGCCCTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAGGAGATCAAGA  2426

Query 1441  --------  1440
                    
Sbjct 2427  CCATCCTG  2434