Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_02164
- Subject:
- XR_385168.2
- Aligned Length:
- 5355
- Identities:
- 950
- Gaps:
- 4353
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCGCCGCCAAGTGAGTGAGGAGGAGGAGAGCCGCGGAGGAAGAGGAGGAGCGCAGTCGGAGCGCGGCGGCGGCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCGGCGGCGGTAACGCGGAGCGCCGCGGCGGACAGCACCGCAGACTCGCGAGCTCCGGCGCAGGCGGCGCGACC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGCCGACGAGCGGCCCCCCGGCTCCTCGCGGCGCAGCGGCCCCGCGCCGCGCTCGGCCCGAGACCCGCCTCTGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGCCGGCCTCGCGAGGGGAGCCGCGCCGGGCGGCCGAGGAGCGGCGGCCGCGGCGCGTCGGGCCGGGCGAAAGT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GCCTGCGGGGGGCGGGCGGGCGCGCGGAGCCGGCCGCCCCGGGGCTCGGCGCGGGAGCCGGAGCGGGAGCCGGC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCGGAGCGGGACGCCGCGTCCCGAGCGGCCGGCGGCCGGAGCTCGCCCCCGCCCCTCCCTCCTCTCCTCCGGCG 444
Query 1 ---------------------------------------ATGGTCGGGGAAATGGAAACGAAGGAGAAGCCGAA 35
|||||||||||||||||||||||||||||||||||
Sbjct 445 GCGGCGGCGGCGGGCGGAGTGAGCTGCGGAGCCTGGAATATGGTCGGGGAAATGGAAACGAAGGAGAAGCCGAA 518
Query 36 GCCCACCCCAGATTACCTGATGCAGCTGATGAACGACAAGAAGCTCATGAGCAGCCTGCCCAACTTCTGCGGGA 109
|||||||||||||||..|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GCCCACCCCAGATTATTTGATGCAGCTGATGAACGACAAGAAGCTCATGAGCAGCCTGCCCAACTTCTGCGGGA 592
Query 110 TCTTCAACCACCTCGAGCGGCTGCTGGACGAAGAAATTAGCAGAGTACGGAAAGACATGTACAATGACACATTA 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 593 TCTTCAACCACCTCGAGCGGCTGCTGGACGAAGAAATTAGCAGAGTACGGAAAGACATGTACAATGACACGTTA 666
Query 184 AATGGCAGTACAGAGAAAAGGAGTGCAGAATTGCCTGATGCTGTGGGACCTATTGTTCAGTTACAAGAGAAACT 257
||||||||||||||||||||.|||||||||||||||||.||.||||||||.|||||||||||||||||||||||
Sbjct 667 AATGGCAGTACAGAGAAAAGAAGTGCAGAATTGCCTGACGCGGTGGGACCCATTGTTCAGTTACAAGAGAAACT 740
Query 258 TTATGTGCCTGTAAAAGAATACCCAGATTTTAATTTTGTTGGGAGAATCCTTGGACCTAGAGGACTTACAGCCA 331
||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct 741 TTATGTGCCTGTAAAAGAATACCCTGATTTTAATTTTGTTGGGAGAATCCTTGGACCTAGAGGACTTACAGCTA 814
Query 332 AACAACTTGAAGCAGAAACCGGATGTAAAATCATGGTCCGAGGCAAAGGCTCAATGAGGGATAAAAAAAAGGAG 405
|||||||||||||||||||.|||||||||||.|||||||||||||||||||||||||||||||||||.||||||
Sbjct 815 AACAACTTGAAGCAGAAACGGGATGTAAAATAATGGTCCGAGGCAAAGGCTCAATGAGGGATAAAAAGAAGGAG 888
Query 406 GAGCAAAATAGAGGCAAGCCCAATTGGGAGCATCTAAATGAAGATTTACATGTACTAATCACTGTGGAAGATGC 479
||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||
Sbjct 889 GAGCAAAATAGAGGCAAGCCCAATTGGGAGCATCTAAATGAAGACTTACATGTACTAATCACTGTGGAAGATGC 962
Query 480 TCAGAACAGAGCAGAAATCAAATTGAAGAGAGCAGTTGAAGAAGTGAAGAAATTATTGGTACCTGCAGCAGAAG 553
|||||||||||||||||||||..||||||||||.|||||||||||||||||.|||.||||||||||.||.||||
Sbjct 963 TCAGAACAGAGCAGAAATCAAGCTGAAGAGAGCGGTTGAAGAAGTGAAGAAGTTACTGGTACCTGCGGCTGAAG 1036
Query 554 GAGAAGACAGCCTGAAGAAGATGCAGCTGATGGAGCTTGCGATTCTGAATGGCACCTACAGAGATGCCAACATT 627
|.||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||.|||||||||
Sbjct 1037 GTGAAGACAGCCTGAAGAAGATGCAGCTGATGGAGCTTGCAATTCTGAATGGCACCTACAGAGACGCCAACATT 1110
Query 628 AAATCACCAGCCCTTGCCTTTTCTCTTGCAGCAACAGCCCAGGCTGCTCCAAGGATCATTACTGGGCCTGCGCC 701
|||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||.||||||||||||||
Sbjct 1111 AAATCACCAGCCCTTGCCTTTTCTCTTGCAGCAACTGCCCAGGCTGCTCCAAGGATCATCACTGGGCCTGCGCC 1184
Query 702 GGTTCTCCCACCAGCTGCCCTGCGTACTCCTACGCCAGCTGGCCCTACCATAATGCCTTTGATCAGACAAATAC 775
.||.||||||||||||||.||||||||.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TGTCCTCCCACCAGCTGCTCTGCGTACACCTACGCCAGCTGGCCCTACCATAATGCCTTTGATCAGACAAATAC 1258
Query 776 AGACCGCTGTCATGCCAAACGGAACTCCTCACCCAACTGCTGCAATAGTTCCTCCAGGGCCCGAAGCTGGTTTA 849
|||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||.||||||||.|||
Sbjct 1259 AGACCGCTGTCATGCCAAACGGAACTCCTCACCCAACTGCTGCAATAGTCCCTCCAGGGCCTGAAGCTGGGTTA 1332
Query 850 ATCTATACACCCTATGAGTACCCCTACACATTGGCACCAGCTACATCAATCCTTGAGTATCCTATTGAACCTAG 923
|||||.|||||||||||.|||||||||||||||||||||||||||||||||||||||||.|||||||||||.||
Sbjct 1333 ATCTACACACCCTATGAATACCCCTACACATTGGCACCAGCTACATCAATCCTTGAGTACCCTATTGAACCCAG 1406
Query 924 TGGTGTATTAGGTGCGGTGGCT------ACTAAAG--------TTCGAAGGCACGATATGCGTGTC-------- 975
||||||.|||||| .||||| ||.|||| ||| |.|.||| |||
Sbjct 1407 TGGTGTGTTAGGT---ATGGCTTTCCCAACGAAAGGCTAAGAATTC--AAGAACG--------GTCTTAACCGA 1467
Query 976 -----CATC---------CTTACCAAAGGATTGTGACCGCAGACCGAGCCGCCACCGGCAAC------------ 1023
|||| .|||.||||.|.|| ||.|..|||.|||.||||.||.
Sbjct 1468 ACCCTCATCAGATCTGAATTTAACAAATGCTT--------AGTCTCAGCAGCCTCCGGGAAAAACCTTAGCCTA 1533
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 1534 GCAGTCAGTGACTTACTTGCACTTTTTGCACATAGATATAAAGTAAAATGATACTATTAATTTGGATTAGTCTG 1607
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 1608 TAATACTGCAAAGCAACAGTAATTTATAAAGGAGTGTATAGAAGTAAACTGACTGCTAAGTGTACTGTACTGTT 1681
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 1682 TGCTTTACTAATCACCTAATTCATTGCAGTTCATACTTATTGACTCAAAAGTTTAAATCCACAATCTGTAGGCT 1755
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 1756 TTAATTAAGAGTTGCTTTTTAAACCTTTTTTAAGTGATAAACTCTGAAAGTTAAGGTTAGCAAAATAATTGTCA 1829
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 1830 GTATTAAATGTGGCATTATTTAAGTAGTCCTGCTGCAAGAAAGGCACTTCAGTGAATATGTGACTAGTAAAGCT 1903
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 1904 CAGACACGTCTGGTTCTAATAGAGCTCGTGAGATACTGTGACTTGGGGACTGTCAATGAAGAGGTGAAGTAGGT 1977
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 1978 AGAAGGCCAACCTGTTTGAAATGAATGCAATATTGATAGATACATGACATACTACAGTTGATTTTAAAACTACT 2051
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 2052 GTGCCTTAACATGTTTCTTAAGCTTTTGTAGTAAGTGAACCTTTGAGATCCATTTTGATAAACCTGCTGTCAAT 2125
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 2126 GTTTCCCTTATGTATGTTTTCTAACTTTGTCTTGGTAATTGCAATTTAACTAGGTGCGGTGGCTACTAAAGTTC 2199
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 2200 GAAGGCACGATATGCGTGTCCATCCTTACCAAAGGATTGTGACCGCAGACCGAGCCGCCACCGGCAACTAACCT 2273
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 2274 ATGACCTTCTGACCTCTGAACTCTTCACCCAATGATGACCTGACCATGCCTGCCTGCTGATCAGTTAACTGGTA 2347
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 2348 ATCGCCTTTGCTTGCCTGTCGTCAGTGCAGCGAGCTGAGGCACTTGTCCGTTCGTCTTACCATCTAACCAAACA 2421
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 2422 AAAGACAAAGAAATTGTCCTCCAACTCAGCTTTTCCCCCCCTGTTTGGGTGAAAGTGGTTCTAGAACCTGCACT 2495
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 2496 GAATAGTAGTAAAGCAATAAGGCCCGATTCATCCCACAGCACTGATCATCTCTCAATGCCCCACCCCAAGCGAA 2569
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 2570 CGGTAAGAAGGCCTCTCTTAAGAAGGGGAGACAGATGGCCCTAACTACTCAGTGACAGAGGCAGTTACTGTGAG 2643
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 2644 AGACTTGTAGGAATTTTTTTCTTCTCCTAGCGAAGTCAAAGCTCTCTCTGAATGTACTGTGTGACAATGCATCA 2717
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 2718 TGCATGAACCTTCGGTCAGGGATGTCGTTGGGGAAGTGACTTCAAAAGTATTCAAAATTTGACATGCTGTTTGT 2791
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 2792 TTAGTCACTACAGTGCCCTCAAAGGGCAGACATTGCAGCCTTTTTATATTGCCTGCCAAAATTTGAAGTATTAG 2865
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 2866 AACAAAGTGTGCCATGAGAGAAAAACTTAACAAGGAGTTTTGAAAAGAAATGCAAAGAACAAAACTACAACACT 2939
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 2940 ATTTTTTAAAAAGTTGAGTATCTGAGTTAAAATTTCCAAATCTTTATTTTACACCACCTTAAAAATTATATGAG 3013
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 3014 AACAAGGTACATGCATTATGTGTCACATTACTGGGCAAACTGTTCAAATATTTTTTTTAAACCTCCCTGTATAG 3087
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 3088 AAAATATCATTAAGGATGTAAAAGCCATGCTTGCCTATTTGCTGTATACATGTAATGAAATTGTAGATAAAGTG 3161
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 3162 TAGTGCATTGAAACAAATGAACAAAAAAGTAGATACTTTTACTATACAAGGGTGCTGGTGCAGAAAAAAATATA 3235
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 3236 TATATTTTTGGAAATGTAGCATTTTATACTTTCAAGTGTTATAAAAAAAAAGAAAAAGAACAAAGAAACCCTTT 3309
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 3310 ATTTCATTAAATGATTTTTTCTGGTGGTTGTCAAGAAACAAAAGACCAAAAGAGCCTTTTTGTCTTTCTTTTTT 3383
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 3384 ATTTTTTAAGTATTGGAATAAGTCTAATGAAAAAGAAAGTGCCTTATTTTTCTTCATGGTCATTTAGTCAAGTG 3457
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 3458 TCCTGTAAGATCAGCTCCTCCCTCAGAATAAAGTTACTGCATGTTCCTCAGTCGCCCAGTATGTGAAAGGAGAT 3531
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 3532 ATGAGAGGAGACAAATGAGTTGATGGTCTAAATTATAAGATTTGTGTCACATTATCTTGATGCCAGTTTGCCAA 3605
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 3606 ATCTGATACTGTGAAAAAATTTGATAGCTTTTCTAATGTCTGACTAGTAAATTTTAAAATGTCATTCTTTTACA 3679
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 3680 AATCATAATTAGTACTTTTGGTTATTACCGTCTTCAGTGTTAGCCCAAAGATTCTGAGGTTTAGAAAAAAATTA 3753
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 3754 TGTAAGATCTGAACATCAGTTTGCAGACAAAATTAAATTAGAGCTTTATTTTATTTGGAGAAGAGGGATACAAT 3827
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 3828 GGAATTTTTCCTTACCAATTAGAAATAATTGTAATGCCTAAAAAACTTTTTCACAAAAATGAATCTTTGAAATT 3901
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 3902 TTTTATTGTTGAAAAAGTGTTAAGTAACATAAATCTAATCAGATATCTTATGTAGTCCATCTCTGCTGGCTTTA 3975
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 3976 GTAACTGCTCCTAAACTTTTTAACTCTAAAGGAGCGTGGAAAGCCCGCATCACAGTGTTCAGTGACTGCTCTGC 4049
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 4050 TCCATTCTTTCTCCTCTCCAGTTTCTCTCTTGAAAGTCAAACAGTTTTGTAGTTGAAGCAGTCCGTGTGCAAAG 4123
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 4124 CCTGCATCTAAACACTTGCGTTAATAAGTCATTAACCGCTCAGTACCAGATGTGGCAAATCTCAAGTGATTGTG 4197
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 4198 GACTCCTGGCTCATCAACTCATGCCCTCTTCCATACCCTCATGGCTTCACAGTCAAGGTCAGCAGGAAGCTCAT 4271
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 4272 TGGTCACCTTCATGGTGACCTCTCCATTATTCTGTCTCACTTGGAACCATTTTCAGTTTATTTACTATGCAATA 4345
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 4346 GACAGTCCTTGTTTTGTACTCAGCTAGCTTTGATTTAATGTACCACTGCTTTGTCTTTCTGTTACACATATGGT 4419
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 4420 TTTGATTTATTTACAATATATGCTGTGCCATTTTGATTTTTATTTTGGTTGGTTGGTTGAATAAATATGCGACA 4493
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 4494 CTCAGAACACTTGAGGTGATAGTTTTAAAAAAAACAAACAAACAGTACCAGTATTTGATCCAGTCTCATCTCAG 4567
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 4568 CTGTGTTATACCTGGACAATTTAGATGTTTATCAAAGGTCTTTTATGGGGAAGAAAGCAAATGTGTAAAACAGT 4641
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 4642 AGACGTGTGACGTTTATGAGTAATGCTGGCTCTGAACAAACTTTTGAAAACTTAGTTGACAGTGTTTTGAGTCA 4715
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 4716 ACTGAAAAAAAGCATGACTTTTGGAATCTCTGAATGCCTTGGTTCTCAGTATTATCACTCTATTGAATTTTTTT 4789
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 4790 TTCTTATTAAAGTATGTAGTTTAAAAGTAAGACTTTTTTCCTGACAGTATTATGTAATTTTTAGCGTGGGTAGA 4863
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 4864 TGGGAGTGTCGCTTGTATGTTACCATACAGCTGACATGTATTTTTTGTCTATTCTTTATTATCTTAGTAGTTTC 4937
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 4938 ATGCTGTGTATGTACCATAACCAACCTATTGCCTATGAGAAACATGTAAGATAATGTATTTACAGCCATTGTTA 5011
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 5012 CAAGTTTATAATGTATTTTTCTATCTTGTTTTATATGTATGTTATATAACATTCAAAAGAATTTTTTTCTTGAT 5085
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 5086 TGAGAAAAGGATACAAAATGCAAAATCCACAATTTTGATAACTGAAAATTGCCAATTGTTTTGCAGTACTTTAT 5159
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 5160 TATATTGGGTGTCTTGTCTTTCTTGGGCTTTTAGTTAGCTGATGAATGAATACATTAGACACTTCTGGGTTTTA 5233
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 5234 GTTGGGATTTTACATAGCTTGCATTTTAGTTCTTTGGTTCTTTGCTGTTTCTATTAACCCATAGCATTATTTTA 5307
Query 1024 --------------------------- 1023
Sbjct 5308 ATAAATGTTATAATACCAACCTACTAA 5334
