Construct: ORF ccsbBroadEn_02164

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002417.1_s300c1, BRDN0000392648
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
QKI (9444)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9444 QKI QKI, KH domain containing R... NM_006775.3 100% 100%
2 human 9444 QKI QKI, KH domain containing R... XM_011536258.2 99.7% 99.7% 634_635insCAG
3 human 9444 QKI QKI, KH domain containing R... XM_017011502.1 98.6% 98.5% 1010_1011delGTinsCCGCCACCGGCAAC
4 human 9444 QKI QKI, KH domain containing R... NM_001301085.2 97.6% 97.6% 634_635ins24
5 human 9444 QKI QKI, KH domain containing R... NM_206854.3 93.1% 92% (many diffs)
6 human 9444 QKI QKI, KH domain containing R... NM_206853.3 93% 92.1% (many diffs)
7 human 9444 QKI QKI, KH domain containing R... NM_206855.3 92.9% 91.4% (many diffs)
8 human 9444 QKI QKI, KH domain containing R... XM_017011503.1 92.7% 91.8% (many diffs)
9 human 9444 QKI QKI, KH domain containing R... XM_011536259.2 90.7% 89.7% (many diffs)
10 human 9444 QKI QKI, KH domain containing R... XM_017011504.1 90.7% 89.7% (many diffs)
11 human 9444 QKI QKI, KH domain containing R... XM_011536260.2 85.9% 85.9% 402_403ins144
12 human 9444 QKI QKI, KH domain containing R... XM_011536261.1 55.6% 51.8% (many diffs)
13 human 9444 QKI QKI, KH domain containing R... XR_245557.3 12.5% (many diffs)
14 human 9444 QKI QKI, KH domain containing R... XR_942633.2 12.5% (many diffs)
15 human 9444 QKI QKI, KH domain containing R... XR_001743750.1 10.5% (many diffs)
16 human 9444 QKI QKI, KH domain containing R... XR_001743749.1 10.1% (many diffs)
17 mouse 19317 Qk quaking NM_001159517.1 96.3% 100% (many diffs)
18 mouse 19317 Qk quaking XM_006523300.2 94% 97.6% (many diffs)
19 mouse 19317 Qk quaking NM_021881.2 89.5% 92% (many diffs)
20 mouse 19317 Qk quaking NM_001159516.1 89.4% 92.1% (many diffs)
21 mouse 19317 Qk quaking XR_385168.2 17.7% (many diffs)
22 mouse 19317 Qk quaking XR_385170.2 17.2% (many diffs)
23 mouse 19317 Qk quaking XR_385167.2 14.3% (many diffs)
24 mouse 19317 Qk quaking XR_385169.2 13.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1089
ORF length:
1023
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGT CGGGGAAATG GAAACGAAGG AGAAGCCGAA GCCCACCCCA GATTACCTGA
121TGCAGCTGAT GAACGACAAG AAGCTCATGA GCAGCCTGCC CAACTTCTGC GGGATCTTCA
181ACCACCTCGA GCGGCTGCTG GACGAAGAAA TTAGCAGAGT ACGGAAAGAC ATGTACAATG
241ACACATTAAA TGGCAGTACA GAGAAAAGGA GTGCAGAATT GCCTGATGCT GTGGGACCTA
301TTGTTCAGTT ACAAGAGAAA CTTTATGTGC CTGTAAAAGA ATACCCAGAT TTTAATTTTG
361TTGGGAGAAT CCTTGGACCT AGAGGACTTA CAGCCAAACA ACTTGAAGCA GAAACCGGAT
421GTAAAATCAT GGTCCGAGGC AAAGGCTCAA TGAGGGATAA AAAAAAGGAG GAGCAAAATA
481GAGGCAAGCC CAATTGGGAG CATCTAAATG AAGATTTACA TGTACTAATC ACTGTGGAAG
541ATGCTCAGAA CAGAGCAGAA ATCAAATTGA AGAGAGCAGT TGAAGAAGTG AAGAAATTAT
601TGGTACCTGC AGCAGAAGGA GAAGACAGCC TGAAGAAGAT GCAGCTGATG GAGCTTGCGA
661TTCTGAATGG CACCTACAGA GATGCCAACA TTAAATCACC AGCCCTTGCC TTTTCTCTTG
721CAGCAACAGC CCAGGCTGCT CCAAGGATCA TTACTGGGCC TGCGCCGGTT CTCCCACCAG
781CTGCCCTGCG TACTCCTACG CCAGCTGGCC CTACCATAAT GCCTTTGATC AGACAAATAC
841AGACCGCTGT CATGCCAAAC GGAACTCCTC ACCCAACTGC TGCAATAGTT CCTCCAGGGC
901CCGAAGCTGG TTTAATCTAT ACACCCTATG AGTACCCCTA CACATTGGCA CCAGCTACAT
961CAATCCTTGA GTATCCTATT GAACCTAGTG GTGTATTAGG TGCGGTGGCT ACTAAAGTTC
1021GAAGGCACGA TATGCGTGTC CATCCTTACC AAAGGATTGT GACCGCAGAC CGAGCCGCCA
1081CCGGCAACTA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa
1141tttgttgcaa cgaac

Download FASTA (ORF) (Full)