Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_02519
- Subject:
- XR_388354.3
- Aligned Length:
- 3926
- Identities:
- 1647
- Gaps:
- 2085
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TGATTTGCTTTCCCTTAGTGTCCGCAACTCAGTTTCCCTGTCTCTGCCCGGCGAGCCCTACTGTCAGAGTGCAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGCCCCTTTAACTAGAGTGACCCGGGTGGCTCCTTCCCGGGACAGCGCGTGCCCGCTCGCCCGTCCGCGCGCGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCCCGTCCGTCCGTCCCCCGCCCCTCGCTCCCGCCCCAGCTCGCGCTGCCCGGGCGGGCGCCGGCCGCTGGCGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGCTTCTGCTGCCGCCCCCGGGGCGCGATCCGCCGCCCGCCGCCCGGGGACCCGGCGAGGGGCGGGGGCAGCCC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CGAACTGGCCCCCGGTCTCTCCCTCGCCGGTCTTAGGCATCCCAGAAAGTTTGTCCCTTTGCTCTCCGCCGGGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AGTCCTGCCGCGACGAGAACCCCAGACAGACCTTTGGAGCTACAGGTGCCTCCTGACTACTCTTCCCCCACAAT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CAGGGTTTCCCTTACAGCCCTGCTGGTGTGGCCAGGCCCCAAGTGTAGGATGGGGCTCCCCATACGCGGGCCGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGGCAGCCAGAACTGATACAGCCCCGCTGATCTGGGGCCAGGACACCAGCTGAGGAGGGCAGGAGATCCTGGAA 592
Query 1 ---ATGGCTGGTGCCTCGGTGAAAGTGGCAGTGAGGGTTCGGCCCTTTAACGCCCGTGAGACCAGCCAGGATGC 71
||||||||.|||||.||||||||.|||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct 593 GCTATGGCTGGAGCCTCCGTGAAAGTTGCAGTGAGGGTTCGGCCCTTTAATGCCCGTGAGACCAGCCAGGATGC 666
Query 72 CAAGTGTGTGGTCAGCATGCAGGGCAACACCACCTCCATCATCAATCCTAAACAGAGCAAGGATGCCCCCAAAA 145
||||||||||||||||||||||||||||||||||||||||||.|||||.|||||||||||||||||||||||||
Sbjct 667 CAAGTGTGTGGTCAGCATGCAGGGCAACACCACCTCCATCATTAATCCCAAACAGAGCAAGGATGCCCCCAAAA 740
Query 146 GCTTCACCTTTGACTACTCCTACTGGTCACACACTTCGACGGAGGACCCCCAGTTTGCATCTCAGCAGCAAGTG 219
||||||||||.|||||.||.||||||||.||.||||||..||||||.||.||||||||||||||||||||.|||
Sbjct 741 GCTTCACCTTCGACTATTCTTACTGGTCGCATACTTCGGTGGAGGATCCGCAGTTTGCATCTCAGCAGCAGGTG 814
Query 220 TATCGGGACATTGGAGAAGAGATGCTGCTCCACGCCTTTGAAGGCTACAACGTGTGCATCTTTGCCTATGGGCA 293
||.||.|||||.||||||||||||||.|||||.|||||||||||||||||.|||||||||||||||||.|||||
Sbjct 815 TACCGAGACATAGGAGAAGAGATGCTACTCCATGCCTTTGAAGGCTACAATGTGTGCATCTTTGCCTACGGGCA 888
Query 294 GACCGGGGCTGGGAAATCCTATACCATGATGGGGCGACAGGAGCCAGGGCAGCAGGGCATCGTGCCCCAGCTCT 367
|||.|||||||||||.|||||.||||||||||||||.||||||||.||||||||||||||.|||||.|||||||
Sbjct 889 GACGGGGGCTGGGAAGTCCTACACCATGATGGGGCGGCAGGAGCCGGGGCAGCAGGGCATTGTGCCTCAGCTCT 962
Query 368 GTGAGGACCTCTTCTCTCGCGTTAGTGAGAACCAGAGTGCTCAGCTATCCTACTCTGTGGAGGTGAGCTATATG 441
|||||||||||||||||||.||.|.||.||||||||||||.|||||.|||||.||.||.|||||||||||||||
Sbjct 963 GTGAGGACCTCTTCTCTCGAGTCAATGTGAACCAGAGTGCCCAGCTTTCCTATTCAGTAGAGGTGAGCTATATG 1036
Query 442 GAGATCTACTGTGAGCGGGTACGAGACCTCTTGAACCCCAAGAGTCGGGGTTCTCTGCGGGTCCGGGAGCACCC 515
||.|||||.||.|||||.||||||||||||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct 1037 GAAATCTATTGCGAGCGAGTACGAGACCTCTTGAACCCCAAGAGTCGGGGCTCTCTGCGGGTCCGGGAGCACCC 1110
Query 516 CATCCTGGGCCCGTACGTGCAGGACCTGTCCAAATTGGCTGTGACCTCCTACGCAGACATTGCTGACCTCATGG 589
||||||.||||||||||||||.||||||||.|||.||||||||||.|||||.|||||||||||.||||||||||
Sbjct 1111 CATCCTAGGCCCGTACGTGCAAGACCTGTCTAAACTGGCTGTGACTTCCTATGCAGACATTGCCGACCTCATGG 1184
Query 590 ACTGTGGAAATAAAGCACGGACTGTGGCTGCCACCAACATGAATGAGACCAGCAGCCGTTCCCATGCCGTCTTT 663
|||||||||||||.|||.|.||.||||||||||||||||||||.||||||||||||||.|||||||||||||||
Sbjct 1185 ACTGTGGAAATAAGGCAAGAACCGTGGCTGCCACCAACATGAACGAGACCAGCAGCCGCTCCCATGCCGTCTTT 1258
Query 664 ACCATCGTCTTCACACAGCGCTGCCATGACCAGCTCACGGGGCTGGACTCGGAGAAGGTCAGTAAGATCAGTTT 737
||.||.|||||.||.|||||.|.||||||||||||.||.||.|||||.||.||.|||||||||||||||||.||
Sbjct 1259 ACTATTGTCTTTACCCAGCGATCCCATGACCAGCTTACTGGCCTGGATTCAGAAAAGGTCAGTAAGATCAGCTT 1332
Query 738 GGTGGACCTTGCTGGGAGTGAGCGAGCCGACTCCTCAGGGGCCCGGGGCATGCGCCTGAAGGAAGGAGCCAACA 811
|||||||||.||.|||||||||||.||.||||||||||||||||||||.|||||.||.||||||||.|||||||
Sbjct 1333 GGTGGACCTCGCCGGGAGTGAGCGGGCTGACTCCTCAGGGGCCCGGGGGATGCGTCTAAAGGAAGGCGCCAACA 1406
Query 812 TCAATAAGTCCCTGACTACACTAGGGAAAGTGATCTCGGCCCTTGCAGATATGCAATCAAAGAAGCGAAAGTCG 885
|||||||||||||||||||.||.|||||.||||||||.|||||.||||||.||||||||||||||||.||||||
Sbjct 1407 TCAATAAGTCCCTGACTACGCTTGGGAAGGTGATCTCAGCCCTGGCAGATTTGCAATCAAAGAAGCGGAAGTCG 1480
Query 886 GATTTTATCCCCTACAGGGACTCTGTGCTCACCTGGCTGCTCAAGGAAAATTTGGGGGGGAACTCACGCACAGC 959
|||||.||||||||.||.|||||.|||||.|||||||||||||||||.||||||||.||||||||.||||||||
Sbjct 1481 GATTTCATCCCCTATAGAGACTCAGTGCTTACCTGGCTGCTCAAGGAGAATTTGGGTGGGAACTCTCGCACAGC 1554
Query 960 CATGATTGCAGCCCTGAGCCCTGCTGACATCAATTACGAGGAGACTCTCAGCACCCTCAGGTATGCTGACCGCA 1033
.|||||||||||||||||.||||||||||||||||||||||||||.||||||||.|||||||||||.|||||||
Sbjct 1555 AATGATTGCAGCCCTGAGTCCTGCTGACATCAATTACGAGGAGACACTCAGCACTCTCAGGTATGCAGACCGCA 1628
Query 1034 CCAAGCAAATCCGCTGCAATGCCATCATCAACGAGGACCCTAATGCCCGGCTGATTAGAGAGCTGCAGGAGGAA 1107
|||||||.|||||.||||||||..||||||||||||||||.|||||||||||.||..|.||||||||||||||.
Sbjct 1629 CCAAGCAGATCCGATGCAATGCTGTCATCAACGAGGACCCCAATGCCCGGCTTATCCGGGAGCTGCAGGAGGAG 1702
Query 1108 GTAGCCCGGCTGCGGGAACTGCTGATGGCTCAGGGACTGTCAGCCTCTGCTCTGGAAGGCCTGAAGACGGAAGA 1181
||.||||||||||||||.|||||||||||||||||.|||||||||||||||||.|.|||.||.|||..||||||
Sbjct 1703 GTGGCCCGGCTGCGGGACCTGCTGATGGCTCAGGGGCTGTCAGCCTCTGCTCTAGGAGGTCTAAAGGTGGAAGA 1776
Query 1182 AGGGAGTGTCAGAGGCGCCCTGCCAGCTGTGTCATCTCCCCCAGCTCCAGTTTCACCCTCATCACCCACCACAC 1255
.||||||....||||.|..|||||..|||..|||||||||||.||.||||.||||||||||||.||..||.|||
Sbjct 1777 GGGGAGTCCTGGAGGTGTTCTGCCCCCTGCATCATCTCCCCCCGCCCCAGCTTCACCCTCATCTCCTCCCCCAC 1850
Query 1256 ATAATGGGGAGCTGGAGCCGTCATTCTCCCCCAACACGGAGTCCCAGATTGGGCCTGAGGAAGCCATGGAGAGG 1329
|||||||||||||||||||.||||||||.||||...|.|||.|||||||||||||||||||.||||||||||||
Sbjct 1851 ATAATGGGGAGCTGGAGCCCTCATTCTCACCCAGTGCCGAGCCCCAGATTGGGCCTGAGGAGGCCATGGAGAGG 1924
Query 1330 CTGCAGGAGACAGAGAAGATTATAGCTGAGCTGAACGAGACATGGGAGGAGAAGCTACGCAAGACAGAAGCCCT 1403
||||||||.|||||||||||.||||||||||||||.|||||.||||||||||||||.||.||||||||.||.||
Sbjct 1925 CTGCAGGAAACAGAGAAGATCATAGCTGAGCTGAATGAGACTTGGGAGGAGAAGCTTCGGAAGACAGAGGCTCT 1998
Query 1404 GAGGATGGAGAGAGAAGCATTGCTGGCTGAGATGGGGGTGGCCGTCCGGGAGGATGGGGGAACTGTGGGCGTCT 1477
|||.||||||||||||||||||||||||||||||||.|||||.||||||||||||||.||.||||||||.||||
Sbjct 1999 GAGAATGGAGAGAGAAGCATTGCTGGCTGAGATGGGCGTGGCTGTCCGGGAGGATGGCGGTACTGTGGGTGTCT 2072
Query 1478 TCTCTCCAAAGAAGACTCCCCACCTGGTGAACCTGAACGAAGACCCTCTGATGTCTGAGTGTCTGCTCTACCAC 1551
||||||||||.|||||||||||||||||.||.|||||.||.|||||..||||||||||.|||||.|||||||||
Sbjct 2073 TCTCTCCAAAAAAGACTCCCCACCTGGTAAATCTGAATGAGGACCCCTTGATGTCTGAATGTCTTCTCTACCAC 2146
Query 1552 ATCAAAGATGGCGTCACCAGGGTCGGCCAAGTAGATATGGACATCAAGCTGACCGGACAGTTCATTCGGGAGCA 1625
|||||||||||||||||||||||.||||||||||||.|||||||||||.||||.||.||||||||.||||||||
Sbjct 2147 ATCAAAGATGGCGTCACCAGGGTTGGCCAAGTAGATGTGGACATCAAGTTGACTGGCCAGTTCATCCGGGAGCA 2220
Query 1626 ACACTGTCTGTTCCGGAGCATCCCCCAGCCAGATGGAGA----------------------AGTGGTGGTCACT 1677
.||.||.||.|||||.||||||||.|||||.|||||||| ||||.||||.|||
Sbjct 2221 GCATTGCCTCTTCCGCAGCATCCCTCAGCCTGATGGAGAAGAGGGGCTGTGGCACCCCTGCAGTGATGGTTACT 2294
Query 1678 CTGGAGCCTTGTGAAGGAGCTGAGACATATGTGAATGGGAAGCTTGTGACGGAGCCGCTGGTGCTGAAGTCAGG 1751
||||||||||||||||||||||||||||||||.|||||||||||.|||||||||||||||||||||||||||||
Sbjct 2295 CTGGAGCCTTGTGAAGGAGCTGAGACATATGTCAATGGGAAGCTCGTGACGGAGCCGCTGGTGCTGAAGTCAGG 2368
Query 1752 GAATAGGATTGTGATGGGCAAGAACCACGTTTTCCGCTTCAACCACCCGGAGCAGGCAAGGCTGGAACGGGAAC 1825
.||.||||||||.||||||||||||||.||||||||||||||.||||||||||||||..||||||||||.||||
Sbjct 2369 AAACAGGATTGTAATGGGCAAGAACCATGTTTTCCGCTTCAATCACCCGGAGCAGGCGCGGCTGGAACGAGAAC 2442
Query 1826 GAGGGGTCCCCCCACCCCCAGGACCGCCCTCTGAGCCAGTCGACTGGAACTTTGCCCAGAAGGAACTGCTGGAG 1899
|.|||||||||||.||
Sbjct 2443 GTGGGGTCCCCCCGCC---------------------------------------------------------- 2458
Query 1900 CAGCAAGGCATCGACATAAAGCTGGAAATGGAGAAGAGGCTGCAGGATCTGGAGAATCAGTACCGGAAAGAAAA 1973
Sbjct 2459 -------------------------------------------------------------------------- 2458
Query 1974 GGAAGAAGCCGATCTTCTGCTGGAGCAGCAGCGACTGTATGCAGACTCGGACAGCGGGGATGACTCTGACAAGC 2047
Sbjct 2459 -------------------------------------------------------------------------- 2458
Query 2048 GCTCTTGTGAAGAGAGCTGGAGGCTCATCTCCTCCTTGCGGGAGCAGCTGCCGCCCACCACGGTCCAGACCATT 2121
Sbjct 2459 -------------------------------------------------------------------------- 2458
Query 2122 GTCAAACGCTGTGGTCTGCCCAGCAGTGGCAAGCGCAGGGCCCCTCGCAGGGTTTATCAGATCCCCCAGCGACG 2195
Sbjct 2459 -------------------------------------------------------------------------- 2458
Query 2196 CAGGCTGCAGGGCAAAGACCCCCGCTGGGCCACCATGGCTGACCTGAAGATGCAGGCGGTGAAGGAGATCTGCT 2269
Sbjct 2459 -------------------------------------------------------------------------- 2458
Query 2270 ACGAGGTGGCCCTGGCTGACTTCCGCCACGGGCGGGCTGAGATTGAGGCCCTGGCCGCCCTCAAGATGCGGGAG 2343
Sbjct 2459 -------------------------------------------------------------------------- 2458
Query 2344 CTGTGTCGCACCTATGGCAAGCCAGACGGCCCCGGAGACGCCTGGAGGGCTGTGGCCCGGGATGTCTGGGACAC 2417
Sbjct 2459 -------------------------------------------------------------------------- 2458
Query 2418 TGTAGGCGAGGAGGAAGGAGGTGGAGCTGGCAGTGGTGGTGGCAGTGAGGAGGGAGCCCGAGGGGCGGAGGTGG 2491
Sbjct 2459 -------------------------------------------------------------------------- 2458
Query 2492 AGGACCTCCGGGCCCACATCGACAAGCTGACGGGGATTCTGCAGGAGGTGAAGCTGCAGAACAGCAGCAAGGAC 2565
Sbjct 2459 -------------------------------------------------------------------------- 2458
Query 2566 CGGGAGCTGCAGGCCCTGCGGGACCGCATGCTCCGCATGGAGAGGGTCATCCCCCTGGCCCAGGATCATGAGGA 2639
Sbjct 2459 -------------------------------------------------------------------------- 2458
Query 2640 TGAGAATGAAGAAGGTGGTGAGGTCCCCTGGGCCCCGCCTGAAGGATCAGAGGCAGCAGAGGAGGCAGCCCCCA 2713
Sbjct 2459 -------------------------------------------------------------------------- 2458
Query 2714 GTGACCGCATGCCGTCAGCCCGGCCCCCCTCGCCACCACTGTCAAGCTGGGAGCGGGTGTCACGGCTCATGGAG 2787
Sbjct 2459 -------------------------------------------------------------------------- 2458
Query 2788 GAGGACCCTGCCTTCCGTCGTGGTCGTCTTCGCTGGCTCAAGCAGGAGCAGCTACGGCTGCAGGGACTGCAGGG 2861
Sbjct 2459 -------------------------------------------------------------------------- 2458
Query 2862 CTCTGGGGGCCGGGGCGGGGGGCTGCGCAGGCCCCCAGCCCGCTTTGTGCCCCCTCACGACTGCAAGCTACGCT 2935
Sbjct 2459 -------------------------------------------------------------------------- 2458
Query 2936 TCCCCTTCAAGAGCAACCCCCAGCACCGGGAGTCTTGGCCAGGGATGGGGAGCGGGGAGGCTCCAACTCCGCTC 3009
Sbjct 2459 -------------------------------------------------------------------------- 2458
Query 3010 CAACCCCCTGAGGAGGTCACTCCCCATCCAGCCACCCCTGCCCGCCGGCCTCCGAGTCCCCGAAGGTCCCACCA 3083
Sbjct 2459 -------------------------------------------------------------------------- 2458
Query 3084 TCCCCGCAGGAACTCCCTGGATGGAGGGGGCCGATCCCGGGGAGCGGGTTCTGCACAGCCTGAACCCCAGCACT 3157
Sbjct 2459 -------------------------------------------------------------------------- 2458
Query 3158 TCCAGCCCAAAAAGCACAACTCTTATCCCCAGCCACCCCAACCCTACCCAGCCCAGCGGCCCCCAGGGCCCCGC 3231
Sbjct 2459 -------------------------------------------------------------------------- 2458
Query 3232 TACCCCCCATACACTACTCCCCCACGAATGAGACGGCAGCGTTCTGCCCCTGACCTCAAGGAGAGTGGGGCAGC 3305
Sbjct 2459 -------------------------------------------------------------------------- 2458
Query 3306 TGTG 3309
Sbjct 2459 ---- 2458
