Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_02519
Subject:
XR_388354.3
Aligned Length:
3926
Identities:
1647
Gaps:
2085

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TGATTTGCTTTCCCTTAGTGTCCGCAACTCAGTTTCCCTGTCTCTGCCCGGCGAGCCCTACTGTCAGAGTGCAC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGCCCCTTTAACTAGAGTGACCCGGGTGGCTCCTTCCCGGGACAGCGCGTGCCCGCTCGCCCGTCCGCGCGCGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCCCGTCCGTCCGTCCCCCGCCCCTCGCTCCCGCCCCAGCTCGCGCTGCCCGGGCGGGCGCCGGCCGCTGGCGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CGCTTCTGCTGCCGCCCCCGGGGCGCGATCCGCCGCCCGCCGCCCGGGGACCCGGCGAGGGGCGGGGGCAGCCC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CGAACTGGCCCCCGGTCTCTCCCTCGCCGGTCTTAGGCATCCCAGAAAGTTTGTCCCTTTGCTCTCCGCCGGGG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AGTCCTGCCGCGACGAGAACCCCAGACAGACCTTTGGAGCTACAGGTGCCTCCTGACTACTCTTCCCCCACAAT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CAGGGTTTCCCTTACAGCCCTGCTGGTGTGGCCAGGCCCCAAGTGTAGGATGGGGCTCCCCATACGCGGGCCGG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TGGCAGCCAGAACTGATACAGCCCCGCTGATCTGGGGCCAGGACACCAGCTGAGGAGGGCAGGAGATCCTGGAA  592

Query    1  ---ATGGCTGGTGCCTCGGTGAAAGTGGCAGTGAGGGTTCGGCCCTTTAACGCCCGTGAGACCAGCCAGGATGC  71
               ||||||||.|||||.||||||||.|||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct  593  GCTATGGCTGGAGCCTCCGTGAAAGTTGCAGTGAGGGTTCGGCCCTTTAATGCCCGTGAGACCAGCCAGGATGC  666

Query   72  CAAGTGTGTGGTCAGCATGCAGGGCAACACCACCTCCATCATCAATCCTAAACAGAGCAAGGATGCCCCCAAAA  145
            ||||||||||||||||||||||||||||||||||||||||||.|||||.|||||||||||||||||||||||||
Sbjct  667  CAAGTGTGTGGTCAGCATGCAGGGCAACACCACCTCCATCATTAATCCCAAACAGAGCAAGGATGCCCCCAAAA  740

Query  146  GCTTCACCTTTGACTACTCCTACTGGTCACACACTTCGACGGAGGACCCCCAGTTTGCATCTCAGCAGCAAGTG  219
            ||||||||||.|||||.||.||||||||.||.||||||..||||||.||.||||||||||||||||||||.|||
Sbjct  741  GCTTCACCTTCGACTATTCTTACTGGTCGCATACTTCGGTGGAGGATCCGCAGTTTGCATCTCAGCAGCAGGTG  814

Query  220  TATCGGGACATTGGAGAAGAGATGCTGCTCCACGCCTTTGAAGGCTACAACGTGTGCATCTTTGCCTATGGGCA  293
            ||.||.|||||.||||||||||||||.|||||.|||||||||||||||||.|||||||||||||||||.|||||
Sbjct  815  TACCGAGACATAGGAGAAGAGATGCTACTCCATGCCTTTGAAGGCTACAATGTGTGCATCTTTGCCTACGGGCA  888

Query  294  GACCGGGGCTGGGAAATCCTATACCATGATGGGGCGACAGGAGCCAGGGCAGCAGGGCATCGTGCCCCAGCTCT  367
            |||.|||||||||||.|||||.||||||||||||||.||||||||.||||||||||||||.|||||.|||||||
Sbjct  889  GACGGGGGCTGGGAAGTCCTACACCATGATGGGGCGGCAGGAGCCGGGGCAGCAGGGCATTGTGCCTCAGCTCT  962

Query  368  GTGAGGACCTCTTCTCTCGCGTTAGTGAGAACCAGAGTGCTCAGCTATCCTACTCTGTGGAGGTGAGCTATATG  441
            |||||||||||||||||||.||.|.||.||||||||||||.|||||.|||||.||.||.|||||||||||||||
Sbjct  963  GTGAGGACCTCTTCTCTCGAGTCAATGTGAACCAGAGTGCCCAGCTTTCCTATTCAGTAGAGGTGAGCTATATG  1036

Query  442  GAGATCTACTGTGAGCGGGTACGAGACCTCTTGAACCCCAAGAGTCGGGGTTCTCTGCGGGTCCGGGAGCACCC  515
            ||.|||||.||.|||||.||||||||||||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct 1037  GAAATCTATTGCGAGCGAGTACGAGACCTCTTGAACCCCAAGAGTCGGGGCTCTCTGCGGGTCCGGGAGCACCC  1110

Query  516  CATCCTGGGCCCGTACGTGCAGGACCTGTCCAAATTGGCTGTGACCTCCTACGCAGACATTGCTGACCTCATGG  589
            ||||||.||||||||||||||.||||||||.|||.||||||||||.|||||.|||||||||||.||||||||||
Sbjct 1111  CATCCTAGGCCCGTACGTGCAAGACCTGTCTAAACTGGCTGTGACTTCCTATGCAGACATTGCCGACCTCATGG  1184

Query  590  ACTGTGGAAATAAAGCACGGACTGTGGCTGCCACCAACATGAATGAGACCAGCAGCCGTTCCCATGCCGTCTTT  663
            |||||||||||||.|||.|.||.||||||||||||||||||||.||||||||||||||.|||||||||||||||
Sbjct 1185  ACTGTGGAAATAAGGCAAGAACCGTGGCTGCCACCAACATGAACGAGACCAGCAGCCGCTCCCATGCCGTCTTT  1258

Query  664  ACCATCGTCTTCACACAGCGCTGCCATGACCAGCTCACGGGGCTGGACTCGGAGAAGGTCAGTAAGATCAGTTT  737
            ||.||.|||||.||.|||||.|.||||||||||||.||.||.|||||.||.||.|||||||||||||||||.||
Sbjct 1259  ACTATTGTCTTTACCCAGCGATCCCATGACCAGCTTACTGGCCTGGATTCAGAAAAGGTCAGTAAGATCAGCTT  1332

Query  738  GGTGGACCTTGCTGGGAGTGAGCGAGCCGACTCCTCAGGGGCCCGGGGCATGCGCCTGAAGGAAGGAGCCAACA  811
            |||||||||.||.|||||||||||.||.||||||||||||||||||||.|||||.||.||||||||.|||||||
Sbjct 1333  GGTGGACCTCGCCGGGAGTGAGCGGGCTGACTCCTCAGGGGCCCGGGGGATGCGTCTAAAGGAAGGCGCCAACA  1406

Query  812  TCAATAAGTCCCTGACTACACTAGGGAAAGTGATCTCGGCCCTTGCAGATATGCAATCAAAGAAGCGAAAGTCG  885
            |||||||||||||||||||.||.|||||.||||||||.|||||.||||||.||||||||||||||||.||||||
Sbjct 1407  TCAATAAGTCCCTGACTACGCTTGGGAAGGTGATCTCAGCCCTGGCAGATTTGCAATCAAAGAAGCGGAAGTCG  1480

Query  886  GATTTTATCCCCTACAGGGACTCTGTGCTCACCTGGCTGCTCAAGGAAAATTTGGGGGGGAACTCACGCACAGC  959
            |||||.||||||||.||.|||||.|||||.|||||||||||||||||.||||||||.||||||||.||||||||
Sbjct 1481  GATTTCATCCCCTATAGAGACTCAGTGCTTACCTGGCTGCTCAAGGAGAATTTGGGTGGGAACTCTCGCACAGC  1554

Query  960  CATGATTGCAGCCCTGAGCCCTGCTGACATCAATTACGAGGAGACTCTCAGCACCCTCAGGTATGCTGACCGCA  1033
            .|||||||||||||||||.||||||||||||||||||||||||||.||||||||.|||||||||||.|||||||
Sbjct 1555  AATGATTGCAGCCCTGAGTCCTGCTGACATCAATTACGAGGAGACACTCAGCACTCTCAGGTATGCAGACCGCA  1628

Query 1034  CCAAGCAAATCCGCTGCAATGCCATCATCAACGAGGACCCTAATGCCCGGCTGATTAGAGAGCTGCAGGAGGAA  1107
            |||||||.|||||.||||||||..||||||||||||||||.|||||||||||.||..|.||||||||||||||.
Sbjct 1629  CCAAGCAGATCCGATGCAATGCTGTCATCAACGAGGACCCCAATGCCCGGCTTATCCGGGAGCTGCAGGAGGAG  1702

Query 1108  GTAGCCCGGCTGCGGGAACTGCTGATGGCTCAGGGACTGTCAGCCTCTGCTCTGGAAGGCCTGAAGACGGAAGA  1181
            ||.||||||||||||||.|||||||||||||||||.|||||||||||||||||.|.|||.||.|||..||||||
Sbjct 1703  GTGGCCCGGCTGCGGGACCTGCTGATGGCTCAGGGGCTGTCAGCCTCTGCTCTAGGAGGTCTAAAGGTGGAAGA  1776

Query 1182  AGGGAGTGTCAGAGGCGCCCTGCCAGCTGTGTCATCTCCCCCAGCTCCAGTTTCACCCTCATCACCCACCACAC  1255
            .||||||....||||.|..|||||..|||..|||||||||||.||.||||.||||||||||||.||..||.|||
Sbjct 1777  GGGGAGTCCTGGAGGTGTTCTGCCCCCTGCATCATCTCCCCCCGCCCCAGCTTCACCCTCATCTCCTCCCCCAC  1850

Query 1256  ATAATGGGGAGCTGGAGCCGTCATTCTCCCCCAACACGGAGTCCCAGATTGGGCCTGAGGAAGCCATGGAGAGG  1329
            |||||||||||||||||||.||||||||.||||...|.|||.|||||||||||||||||||.||||||||||||
Sbjct 1851  ATAATGGGGAGCTGGAGCCCTCATTCTCACCCAGTGCCGAGCCCCAGATTGGGCCTGAGGAGGCCATGGAGAGG  1924

Query 1330  CTGCAGGAGACAGAGAAGATTATAGCTGAGCTGAACGAGACATGGGAGGAGAAGCTACGCAAGACAGAAGCCCT  1403
            ||||||||.|||||||||||.||||||||||||||.|||||.||||||||||||||.||.||||||||.||.||
Sbjct 1925  CTGCAGGAAACAGAGAAGATCATAGCTGAGCTGAATGAGACTTGGGAGGAGAAGCTTCGGAAGACAGAGGCTCT  1998

Query 1404  GAGGATGGAGAGAGAAGCATTGCTGGCTGAGATGGGGGTGGCCGTCCGGGAGGATGGGGGAACTGTGGGCGTCT  1477
            |||.||||||||||||||||||||||||||||||||.|||||.||||||||||||||.||.||||||||.||||
Sbjct 1999  GAGAATGGAGAGAGAAGCATTGCTGGCTGAGATGGGCGTGGCTGTCCGGGAGGATGGCGGTACTGTGGGTGTCT  2072

Query 1478  TCTCTCCAAAGAAGACTCCCCACCTGGTGAACCTGAACGAAGACCCTCTGATGTCTGAGTGTCTGCTCTACCAC  1551
            ||||||||||.|||||||||||||||||.||.|||||.||.|||||..||||||||||.|||||.|||||||||
Sbjct 2073  TCTCTCCAAAAAAGACTCCCCACCTGGTAAATCTGAATGAGGACCCCTTGATGTCTGAATGTCTTCTCTACCAC  2146

Query 1552  ATCAAAGATGGCGTCACCAGGGTCGGCCAAGTAGATATGGACATCAAGCTGACCGGACAGTTCATTCGGGAGCA  1625
            |||||||||||||||||||||||.||||||||||||.|||||||||||.||||.||.||||||||.||||||||
Sbjct 2147  ATCAAAGATGGCGTCACCAGGGTTGGCCAAGTAGATGTGGACATCAAGTTGACTGGCCAGTTCATCCGGGAGCA  2220

Query 1626  ACACTGTCTGTTCCGGAGCATCCCCCAGCCAGATGGAGA----------------------AGTGGTGGTCACT  1677
            .||.||.||.|||||.||||||||.|||||.||||||||                      ||||.||||.|||
Sbjct 2221  GCATTGCCTCTTCCGCAGCATCCCTCAGCCTGATGGAGAAGAGGGGCTGTGGCACCCCTGCAGTGATGGTTACT  2294

Query 1678  CTGGAGCCTTGTGAAGGAGCTGAGACATATGTGAATGGGAAGCTTGTGACGGAGCCGCTGGTGCTGAAGTCAGG  1751
            ||||||||||||||||||||||||||||||||.|||||||||||.|||||||||||||||||||||||||||||
Sbjct 2295  CTGGAGCCTTGTGAAGGAGCTGAGACATATGTCAATGGGAAGCTCGTGACGGAGCCGCTGGTGCTGAAGTCAGG  2368

Query 1752  GAATAGGATTGTGATGGGCAAGAACCACGTTTTCCGCTTCAACCACCCGGAGCAGGCAAGGCTGGAACGGGAAC  1825
            .||.||||||||.||||||||||||||.||||||||||||||.||||||||||||||..||||||||||.||||
Sbjct 2369  AAACAGGATTGTAATGGGCAAGAACCATGTTTTCCGCTTCAATCACCCGGAGCAGGCGCGGCTGGAACGAGAAC  2442

Query 1826  GAGGGGTCCCCCCACCCCCAGGACCGCCCTCTGAGCCAGTCGACTGGAACTTTGCCCAGAAGGAACTGCTGGAG  1899
            |.|||||||||||.||                                                          
Sbjct 2443  GTGGGGTCCCCCCGCC----------------------------------------------------------  2458

Query 1900  CAGCAAGGCATCGACATAAAGCTGGAAATGGAGAAGAGGCTGCAGGATCTGGAGAATCAGTACCGGAAAGAAAA  1973
                                                                                      
Sbjct 2459  --------------------------------------------------------------------------  2458

Query 1974  GGAAGAAGCCGATCTTCTGCTGGAGCAGCAGCGACTGTATGCAGACTCGGACAGCGGGGATGACTCTGACAAGC  2047
                                                                                      
Sbjct 2459  --------------------------------------------------------------------------  2458

Query 2048  GCTCTTGTGAAGAGAGCTGGAGGCTCATCTCCTCCTTGCGGGAGCAGCTGCCGCCCACCACGGTCCAGACCATT  2121
                                                                                      
Sbjct 2459  --------------------------------------------------------------------------  2458

Query 2122  GTCAAACGCTGTGGTCTGCCCAGCAGTGGCAAGCGCAGGGCCCCTCGCAGGGTTTATCAGATCCCCCAGCGACG  2195
                                                                                      
Sbjct 2459  --------------------------------------------------------------------------  2458

Query 2196  CAGGCTGCAGGGCAAAGACCCCCGCTGGGCCACCATGGCTGACCTGAAGATGCAGGCGGTGAAGGAGATCTGCT  2269
                                                                                      
Sbjct 2459  --------------------------------------------------------------------------  2458

Query 2270  ACGAGGTGGCCCTGGCTGACTTCCGCCACGGGCGGGCTGAGATTGAGGCCCTGGCCGCCCTCAAGATGCGGGAG  2343
                                                                                      
Sbjct 2459  --------------------------------------------------------------------------  2458

Query 2344  CTGTGTCGCACCTATGGCAAGCCAGACGGCCCCGGAGACGCCTGGAGGGCTGTGGCCCGGGATGTCTGGGACAC  2417
                                                                                      
Sbjct 2459  --------------------------------------------------------------------------  2458

Query 2418  TGTAGGCGAGGAGGAAGGAGGTGGAGCTGGCAGTGGTGGTGGCAGTGAGGAGGGAGCCCGAGGGGCGGAGGTGG  2491
                                                                                      
Sbjct 2459  --------------------------------------------------------------------------  2458

Query 2492  AGGACCTCCGGGCCCACATCGACAAGCTGACGGGGATTCTGCAGGAGGTGAAGCTGCAGAACAGCAGCAAGGAC  2565
                                                                                      
Sbjct 2459  --------------------------------------------------------------------------  2458

Query 2566  CGGGAGCTGCAGGCCCTGCGGGACCGCATGCTCCGCATGGAGAGGGTCATCCCCCTGGCCCAGGATCATGAGGA  2639
                                                                                      
Sbjct 2459  --------------------------------------------------------------------------  2458

Query 2640  TGAGAATGAAGAAGGTGGTGAGGTCCCCTGGGCCCCGCCTGAAGGATCAGAGGCAGCAGAGGAGGCAGCCCCCA  2713
                                                                                      
Sbjct 2459  --------------------------------------------------------------------------  2458

Query 2714  GTGACCGCATGCCGTCAGCCCGGCCCCCCTCGCCACCACTGTCAAGCTGGGAGCGGGTGTCACGGCTCATGGAG  2787
                                                                                      
Sbjct 2459  --------------------------------------------------------------------------  2458

Query 2788  GAGGACCCTGCCTTCCGTCGTGGTCGTCTTCGCTGGCTCAAGCAGGAGCAGCTACGGCTGCAGGGACTGCAGGG  2861
                                                                                      
Sbjct 2459  --------------------------------------------------------------------------  2458

Query 2862  CTCTGGGGGCCGGGGCGGGGGGCTGCGCAGGCCCCCAGCCCGCTTTGTGCCCCCTCACGACTGCAAGCTACGCT  2935
                                                                                      
Sbjct 2459  --------------------------------------------------------------------------  2458

Query 2936  TCCCCTTCAAGAGCAACCCCCAGCACCGGGAGTCTTGGCCAGGGATGGGGAGCGGGGAGGCTCCAACTCCGCTC  3009
                                                                                      
Sbjct 2459  --------------------------------------------------------------------------  2458

Query 3010  CAACCCCCTGAGGAGGTCACTCCCCATCCAGCCACCCCTGCCCGCCGGCCTCCGAGTCCCCGAAGGTCCCACCA  3083
                                                                                      
Sbjct 2459  --------------------------------------------------------------------------  2458

Query 3084  TCCCCGCAGGAACTCCCTGGATGGAGGGGGCCGATCCCGGGGAGCGGGTTCTGCACAGCCTGAACCCCAGCACT  3157
                                                                                      
Sbjct 2459  --------------------------------------------------------------------------  2458

Query 3158  TCCAGCCCAAAAAGCACAACTCTTATCCCCAGCCACCCCAACCCTACCCAGCCCAGCGGCCCCCAGGGCCCCGC  3231
                                                                                      
Sbjct 2459  --------------------------------------------------------------------------  2458

Query 3232  TACCCCCCATACACTACTCCCCCACGAATGAGACGGCAGCGTTCTGCCCCTGACCTCAAGGAGAGTGGGGCAGC  3305
                                                                                      
Sbjct 2459  --------------------------------------------------------------------------  2458

Query 3306  TGTG  3309
                
Sbjct 2459  ----  2458

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