Construct: ORF ccsbBroadEn_02519

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008287.1_s300c1, BRDN0000389783
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
KIF1C (10749)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10749 KIF1C kinesin family member 1C NM_006612.6 100% 100%
2 human 10749 KIF1C kinesin family member 1C XM_005256424.2 100% 100%
3 mouse 16562 Kif1c kinesin family member 1C NM_153103.2 88.2% 94.1% (many diffs)
4 mouse 16562 Kif1c kinesin family member 1C XM_006532320.3 88.2% 94.1% (many diffs)
5 mouse 16562 Kif1c kinesin family member 1C XM_006532321.3 88.2% 94.1% (many diffs)
6 mouse 16562 Kif1c kinesin family member 1C XM_006532322.3 88.2% 94.1% (many diffs)
7 mouse 16562 Kif1c kinesin family member 1C XM_006532323.3 45.2% 48.8% (many diffs)
8 mouse 16562 Kif1c kinesin family member 1C XM_006532324.2 44.1% 45.8% (many diffs)
9 mouse 16562 Kif1c kinesin family member 1C XR_388354.3 41.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3375
ORF length:
3309
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC TGGTGCCTCG GTGAAAGTGG CAGTGAGGGT TCGGCCCTTT AACGCCCGTG
121AGACCAGCCA GGATGCCAAG TGTGTGGTCA GCATGCAGGG CAACACCACC TCCATCATCA
181ATCCTAAACA GAGCAAGGAT GCCCCCAAAA GCTTCACCTT TGACTACTCC TACTGGTCAC
241ACACTTCGAC GGAGGACCCC CAGTTTGCAT CTCAGCAGCA AGTGTATCGG GACATTGGAG
301AAGAGATGCT GCTCCACGCC TTTGAAGGCT ACAACGTGTG CATCTTTGCC TATGGGCAGA
361CCGGGGCTGG GAAATCCTAT ACCATGATGG GGCGACAGGA GCCAGGGCAG CAGGGCATCG
421TGCCCCAGCT CTGTGAGGAC CTCTTCTCTC GCGTTAGTGA GAACCAGAGT GCTCAGCTAT
481CCTACTCTGT GGAGGTGAGC TATATGGAGA TCTACTGTGA GCGGGTACGA GACCTCTTGA
541ACCCCAAGAG TCGGGGTTCT CTGCGGGTCC GGGAGCACCC CATCCTGGGC CCGTACGTGC
601AGGACCTGTC CAAATTGGCT GTGACCTCCT ACGCAGACAT TGCTGACCTC ATGGACTGTG
661GAAATAAAGC ACGGACTGTG GCTGCCACCA ACATGAATGA GACCAGCAGC CGTTCCCATG
721CCGTCTTTAC CATCGTCTTC ACACAGCGCT GCCATGACCA GCTCACGGGG CTGGACTCGG
781AGAAGGTCAG TAAGATCAGT TTGGTGGACC TTGCTGGGAG TGAGCGAGCC GACTCCTCAG
841GGGCCCGGGG CATGCGCCTG AAGGAAGGAG CCAACATCAA TAAGTCCCTG ACTACACTAG
901GGAAAGTGAT CTCGGCCCTT GCAGATATGC AATCAAAGAA GCGAAAGTCG GATTTTATCC
961CCTACAGGGA CTCTGTGCTC ACCTGGCTGC TCAAGGAAAA TTTGGGGGGG AACTCACGCA
1021CAGCCATGAT TGCAGCCCTG AGCCCTGCTG ACATCAATTA CGAGGAGACT CTCAGCACCC
1081TCAGGTATGC TGACCGCACC AAGCAAATCC GCTGCAATGC CATCATCAAC GAGGACCCTA
1141ATGCCCGGCT GATTAGAGAG CTGCAGGAGG AAGTAGCCCG GCTGCGGGAA CTGCTGATGG
1201CTCAGGGACT GTCAGCCTCT GCTCTGGAAG GCCTGAAGAC GGAAGAAGGG AGTGTCAGAG
1261GCGCCCTGCC AGCTGTGTCA TCTCCCCCAG CTCCAGTTTC ACCCTCATCA CCCACCACAC
1321ATAATGGGGA GCTGGAGCCG TCATTCTCCC CCAACACGGA GTCCCAGATT GGGCCTGAGG
1381AAGCCATGGA GAGGCTGCAG GAGACAGAGA AGATTATAGC TGAGCTGAAC GAGACATGGG
1441AGGAGAAGCT ACGCAAGACA GAAGCCCTGA GGATGGAGAG AGAAGCATTG CTGGCTGAGA
1501TGGGGGTGGC CGTCCGGGAG GATGGGGGAA CTGTGGGCGT CTTCTCTCCA AAGAAGACTC
1561CCCACCTGGT GAACCTGAAC GAAGACCCTC TGATGTCTGA GTGTCTGCTC TACCACATCA
1621AAGATGGCGT CACCAGGGTC GGCCAAGTAG ATATGGACAT CAAGCTGACC GGACAGTTCA
1681TTCGGGAGCA ACACTGTCTG TTCCGGAGCA TCCCCCAGCC AGATGGAGAA GTGGTGGTCA
1741CTCTGGAGCC TTGTGAAGGA GCTGAGACAT ATGTGAATGG GAAGCTTGTG ACGGAGCCGC
1801TGGTGCTGAA GTCAGGGAAT AGGATTGTGA TGGGCAAGAA CCACGTTTTC CGCTTCAACC
1861ACCCGGAGCA GGCAAGGCTG GAACGGGAAC GAGGGGTCCC CCCACCCCCA GGACCGCCCT
1921CTGAGCCAGT CGACTGGAAC TTTGCCCAGA AGGAACTGCT GGAGCAGCAA GGCATCGACA
1981TAAAGCTGGA AATGGAGAAG AGGCTGCAGG ATCTGGAGAA TCAGTACCGG AAAGAAAAGG
2041AAGAAGCCGA TCTTCTGCTG GAGCAGCAGC GACTGTATGC AGACTCGGAC AGCGGGGATG
2101ACTCTGACAA GCGCTCTTGT GAAGAGAGCT GGAGGCTCAT CTCCTCCTTG CGGGAGCAGC
2161TGCCGCCCAC CACGGTCCAG ACCATTGTCA AACGCTGTGG TCTGCCCAGC AGTGGCAAGC
2221GCAGGGCCCC TCGCAGGGTT TATCAGATCC CCCAGCGACG CAGGCTGCAG GGCAAAGACC
2281CCCGCTGGGC CACCATGGCT GACCTGAAGA TGCAGGCGGT GAAGGAGATC TGCTACGAGG
2341TGGCCCTGGC TGACTTCCGC CACGGGCGGG CTGAGATTGA GGCCCTGGCC GCCCTCAAGA
2401TGCGGGAGCT GTGTCGCACC TATGGCAAGC CAGACGGCCC CGGAGACGCC TGGAGGGCTG
2461TGGCCCGGGA TGTCTGGGAC ACTGTAGGCG AGGAGGAAGG AGGTGGAGCT GGCAGTGGTG
2521GTGGCAGTGA GGAGGGAGCC CGAGGGGCGG AGGTGGAGGA CCTCCGGGCC CACATCGACA
2581AGCTGACGGG GATTCTGCAG GAGGTGAAGC TGCAGAACAG CAGCAAGGAC CGGGAGCTGC
2641AGGCCCTGCG GGACCGCATG CTCCGCATGG AGAGGGTCAT CCCCCTGGCC CAGGATCATG
2701AGGATGAGAA TGAAGAAGGT GGTGAGGTCC CCTGGGCCCC GCCTGAAGGA TCAGAGGCAG
2761CAGAGGAGGC AGCCCCCAGT GACCGCATGC CGTCAGCCCG GCCCCCCTCG CCACCACTGT
2821CAAGCTGGGA GCGGGTGTCA CGGCTCATGG AGGAGGACCC TGCCTTCCGT CGTGGTCGTC
2881TTCGCTGGCT CAAGCAGGAG CAGCTACGGC TGCAGGGACT GCAGGGCTCT GGGGGCCGGG
2941GCGGGGGGCT GCGCAGGCCC CCAGCCCGCT TTGTGCCCCC TCACGACTGC AAGCTACGCT
3001TCCCCTTCAA GAGCAACCCC CAGCACCGGG AGTCTTGGCC AGGGATGGGG AGCGGGGAGG
3061CTCCAACTCC GCTCCAACCC CCTGAGGAGG TCACTCCCCA TCCAGCCACC CCTGCCCGCC
3121GGCCTCCGAG TCCCCGAAGG TCCCACCATC CCCGCAGGAA CTCCCTGGAT GGAGGGGGCC
3181GATCCCGGGG AGCGGGTTCT GCACAGCCTG AACCCCAGCA CTTCCAGCCC AAAAAGCACA
3241ACTCTTATCC CCAGCCACCC CAACCCTACC CAGCCCAGCG GCCCCCAGGG CCCCGCTACC
3301CCCCATACAC TACTCCCCCA CGAATGAGAC GGCAGCGTTC TGCCCCTGAC CTCAAGGAGA
3361GTGGGGCAGC TGTGTGCCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct
3421tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)

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