Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_02660
Subject:
XR_002956748.1
Aligned Length:
3941
Identities:
452
Gaps:
3445

Alignment

Query    1  ------------------------------------------------------ATGGCGGGTCTGACTGACTT  20
                                                                  ||||||||||||||||||||
Sbjct    1  GACTGACGTCCCGCCCTCTGGCTGTTTCCTGGCCGAGGTGGGTCGGTAGTAGCGATGGCGGGTCTGACTGACTT  74

Query   21  GCAGCGGCTACAGGCCCGAGTGGAAGAGCTGGAGCGCTGGGTGTACGGGCCGGGCGGGGCGCGCGGCTCACGGA  94
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  GCAGCGGCTACAGGCCCGAGTGGAAGAGCTGGAGCGCTGGGTGTACGGGCCGGGCGGGGCGCGCGGCTCACGGA  148

Query   95  AGGTGGCTGACGGCCTGGTCAAGGTGCAGGTGGCTTTGGGGAACATTTCCAGCAAGAGGGAGAGGGTGAAGATT  168
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  AGGTGGCTGACGGCCTGGTCAAGGTGCAGGTGGCTTTGGGGAACATTTCCAGCAAGAGGGAGAGGGTGAAGATT  222

Query  169  CTCTACAAAAAGATTGAAGATCTGATCAAGTACCTGGATCCTGAGTACATCGACCGCATTGCCATACCTGATGC  242
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  CTCTACAAAAAGATTGAAGATCTGATCAAGTACCTGGATCCTGAGTACATCGACCGCATTGCCATACCTGATGC  296

Query  243  CTCTAAGCTGCAATTCATCCTAGCAGAGGAGCAGTTTATCCTTTCC--CAGGT-----TGCA-CTCCTGGAGCA  308
            |||||||||||||||||||||        |||||.|.||.||...|  ||.||     |||| ||    |||.|
Sbjct  297  CTCTAAGCTGCAATTCATCCT--------AGCAGGTAATGCTGGACTACATGTGTACATGCATCT----GAGGA  358

Query  309  GGTGAATGCCTTGGTGCCCATGCT--GGACAGTG-------CTCACATCAAAGCCGT-TCCTG---------AG  363
            .|||..| |.|.||.|   |.|.|  |.||||.|       ||| ||||    |.|| |.|||         ||
Sbjct  359  TGTGGGT-CGTCGGGG---AGGTTAAGCACAGAGATGGCCTCTC-CATC----CAGTCTTCTGGTGGATACAAG  423

Query  364  C-----ATGCTGCCC------------GCCTGCAGCGCTTGG--------CCCA--GATCC--------ACATT  402
            |     |||||||.|            |||||  |..||.||        ||.|  |||||        |||||
Sbjct  424  CCCTGGATGCTGCTCTCTGGAATTGTGGCCTG--GTTCTGGGTTGAGGATCCTATGGATCCTCTAGTAGACATT  495

Query  403  ---------------------CAGCAGCAGGCTCCATGGGG--------AGTGGG----AGTCC-GTGAT----  438
                                 ||||.|||||  ||||||.|        ||||||    ||||| |||.|    
Sbjct  496  GAGTACAGTATACCTCTGCACCAGCTGCAGG--CCATGGTGCCAGCCACAGTGGGAGCTAGTCCAGTGTTCTAT  567

Query  439  ----------------------------------------------------------GAGG------CAGG-A  447
                                                                      ||||      .||| |
Sbjct  568  CAATAGTTTGCCTCTTGGATTTTCCTTCAGAACCTTCCTCACTTCTGCTCACTAGACAGAGGAGCTTCTAGGAA  641

Query  448  AGTTTAGTGGAAGATGTGGGCTTTGCC---------CAG----------------------------TTCCTTT  484
            ||..|||.||.|||   |.||.|||||         |||                            ||.||||
Sbjct  642  AGGGTAGGGGCAGA---GAGCATTGCCATTAAAGAACAGAGAGAGTATTGGCATGAGTTTCAACATCTTTCTTT  712

Query  485  C-TGTG--------CTACACT-------TTGGCCCTA--CAGGA------------CCAGTGTGTGGAAATCAC  528
            | ||||        ||.||.|       ||    |||  |||||            .||.|||.||..|||||.
Sbjct  713  CATGTGAGAAAGCTCTGCAGTGTCAGAGTT----CTAGGCAGGAACTATTGCCTTGGCAATGTCTGCTAATCAG  782

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct  783  TCAGCCATTCTATAAGCTAGGGTTTTTTGAGCTTCGTTATTCATCCAAAAGATGTATAATGATCATCTACTCTG  856

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct  857  ATCCAGGTTCTTTCCTAAGTGAGGAAGCATACAGTGGTGAACCAGAAAGTCCCTGCCCTCATGGGCACAGCCAG  930

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct  931  AGCTAGGGGAGACAGGGTCCCTGCTTCAGGGACCTGAGCTTATAACCCAGATGGGAGATCAGTCTCCCAGGAGA  1004

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 1005  CTGATCAGTGCAATGCAGCACTGAGGACTGGGTAAGGATGGGCCACTCCTGCTAAAAGGGCTGTCAGAGTTCCC  1078

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 1079  AAAGGGCTCTTGGTCAATTGCCATCGCTCAAGCACCAAGTTTAGATATTCTCCTGCACTGACTCTTGAGTCCAG  1152

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 1153  CCTCTCCATCCCTCCCTGTGGCACTGCCTCAGGAATTGTGCATCCACTTGCATATGAATGGTTGCACAGTCTCC  1226

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 1227  TAAATCATACTCTTGACCCTAATCTTTCCCTTCCTGCATGTGGTTCAGTCTCACCCTCACAAAAACATGTTCCC  1300

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 1301  AACATGTCACTTTGCCTACTTTGGAACCTCAGTGTATCCTGCCTTGCTAGGATAAAGTCCTAATTCCATAGTCT  1374

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 1375  GCCATTCAAAGCCTTTCAGTCGGCCGGGTCTACCCTCCCATCCAACTCTGTTTCCTGTGCTCTCCCTACTCCAG  1448

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 1449  TTCAGCTAATTGAATTCTTTCTCCTCTACTAATTGACAGGCATTCCTGCCTCTAAGCATTTGCACGTAACAGTC  1522

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 1523  CTCTCTCTTGAATACCCTTCCCACTCTATGGATTTCAGTGCATTGAAATCCCGTGTGCATACAGGGCCTAGCCC  1596

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 1597  AGATCCTGCTCTCCTCACTGGACTCTTCCATTACTGTCCCAGCTCTCCTCCAGCATATAATTGTCTATGCCTCT  1670

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 1671  GAGAGCCACTGAGCAGAACCTGCCTGGCGTAGTCTGCCACATATCTCTTTTAGACCTTCCTGGGGACCCTTGGG  1744

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 1745  TGTGGGGATCCAAGTCTGAAGTATTTTGTATTTTGTGGCCTAGGAGGTGCTCCCTGAGTTTGTTGATAGGAGGC  1818

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 1819  TAGAAGAAGAGGTCTTGAAGTTAAACCTTGGAGAAAGGTGGGATTTGGAGAAATTGAGAGGCTCATTAGGCTCA  1892

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 1893  GATGGGTCAGACCTGAGGCATCCAGGAGAGTTGGGGGCAGGATGGAAATGTGCACCTAGAGAAGGGGGCAGTGG  1966

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 1967  ACAGAGTCACTGTCCAAAGCTCTAGGACCTAGCCATCTCCCTTGCCAGGTCCTCAGGCCCTTACATGGGCTGAT  2040

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 2041  TAGCAATGCCCAGGTTTGCTTCACTGCAACTATCTTGTCCATTTTTGCTTTAGAGGAGCAGTTTATCCTTTCCC  2114

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 2115  AGGTTGCACTCCTGGAGCAGGTGAATGCCTTGGTGCCCATGCTGGACAGTGCTCACATCAAAGGTATCTCTCTG  2188

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 2189  GGGTTATAGCTTCACTACTCTGGTTGGGGAGGTAGGTGGATGGATGGGCAAGACTTTCCTGTGTTTCAGGTTGT  2262

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 2263  GTGGATTCGGGTTGGGTCTGTTCCTTATCTTTTTTTTTTTTTTTTGGACAGAGTCGTACTCTGTCACCCAGGCT  2336

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 2337  GGAGTGCAGTGGCATGATCTTGACTCACTGCAACCGCTGCCTCCTGGTTCAAACAAACTTCCCACCTTGCCTCC  2410

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 2411  CAAGTAGCTAGGATTACAGGTGTGTGCCACCACACCTGGCTATTTTTAGTAGAGACGGGGTTTCACCATGTTGT  2484

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 2485  CCAGGCTGGTCTCAAACTCCTGGCCCCATGTGATCCACCTGCCTCGGCCTCTCAGAGTGCTGGGATTACAGGCG  2558

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 2559  TGAGCTACTGTGCCTGGCCTGTTCCTTATCTTTATCCTCACCCTGAGGTACTTGCCACATCCACCAATTAAAAT  2632

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 2633  TACCAGGATAGAGAGCCCAGTTTTAGGACCTCAGGCAATTTGGGCCTGAGAACACTAGCCTAAGCTCTAGCAGT  2706

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 2707  CCCCAGCTCTGGGGATTCCTTCTGCCTTCTACCTACCCCCAAGCATCTCTTCTTCAAGGTGCTGCAGAACCCAG  2780

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 2781  ATTTTACTATCAGAGTCTCTGCCAGGTCCATGAATGTATGTGAATTCTTTCTGCTGCACTGCTGAGAGCAGTCC  2854

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 2855  CTGGGCCTGGACTTTGACAAGCAGATAGTGGCTTTAATTGAATCCAGATATCCATCTTGTCTGTCTGTGGAGGT  2928

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 2929  ATTTTTCCCAGCTCCCCCTCCCTACCCCTGATCAGCTGCCCGCTGAGTATCTGACAGCCTTAAGCTTTGAGCCC  3002

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 3003  AGCATGGTGGCCAAGCCTTGGCGTGTTGGATTCCAGCTTAGGGACCTGGCATCCATCTTCAGACTCCCTGTTCC  3076

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 3077  CTAAGCCAGGCAGACCTGCCCCCGCTGGGCTGAGAGCAAAGGGACAGGTCCTATAATAGCCAAAGCTCTCTTTA  3150

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 3151  CCTGGTCCTGCTTATAGCACTGGGGTGGGGGTAGGGAGCAACACTGGGAACCCCAAGGTTTTGTCTTCTCCTCG  3224

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 3225  GGACATGTATCTTCCCCTCCCCTATGGGTCCTGGAGTAAGACTGGAGTGGGCAGGGAGCCCCACTGCCACCTCC  3298

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 3299  AGCTGCAGCAGTCGATGAAGTCTGGCGTTTGTTTAGCTTCTCCACTCAATACTCTAATCCTGCCAAAGACCTAA  3372

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 3373  TAGACTATTGAGCAGTCCCGGGGGAGGGCACAAGCATCATCCAGCAGTGTGTGTTGTGTTTTACAGCCGTTCCT  3446

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 3447  GAGCATGCTGCCCGCCTGCAGCGCTTGGCCCAGATCCACATTCAGCAGCAGTTCCTTTCTGTGCTACACTTTGG  3520

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 3521  CCCTACAGGACCAGTGTGTGGAAATCACTGAGGAGTCCAAGGCTCTCCTGGAGGAATACAACAAGACTACAATG  3594

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 3595  CTTCTCTCCAAGCAATTCGTGCAGTGGGATGAGCTACTTTGCCAGCTAGAGGCCGCCACGCAAGTGAAGCCAGC  3668

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 3669  AGAGGAGTGATAGCTGCTCCCCATCCCAAAGTGGGCCTGGGCAGTCAGGCTCCAGGGCCCTATGCCAACCTGCC  3742

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 3743  TTTGTTACAAGGCAGAGGAAGCTTTGTATTTATTGGCTTCAAGGCCCACCTCTCTGTACTCTGGGCTCTAAAGT  3816

Query  529  --------------------------------------------------------------------------  528
                                                                                      
Sbjct 3817  TGGAGGTCAGGTTACCTGAGGTTTGCAATTTGCAACACCCACCCTCCCCCCAATCAGTGTTCTTATTTCAGTGA  3890

Query  529  -------------------  528
                               
Sbjct 3891  CAATAAACCATAGAGATGA  3909

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