Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_02816
- Subject:
- NR_135906.2
- Aligned Length:
- 3293
- Identities:
- 964
- Gaps:
- 2315
Alignment
Query 1 ATGGGCTGGATCACAGAAGATCTTATTAGACGGAATGCTGAACACAACGACTGTGTCATTTTTTCCCTGGAGGA 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 ACTCTCGTTGCATCAGCAAGAAATAGAAAGACTAGAACACATT-GATAAATGGTGCCGGGATTTAAAAATTCTC 147
..|||| || ||| ||||| ||
Sbjct 1 -------------------------------------GTCATTCGA-----GGT-CCGGG------------TC 19
Query 148 TATCTT-CAAAATAATCTTATTGGGAAAATTGAAAATGTTAGCAAACTCAAGAAACTTGAATATTTGAATTTAG 220
...||| | ||| ||.|||.||||..|||..| |
Sbjct 20 CGGCTTGC--------------GGG------------GTCAGCGAACTGGAGAGGC-----------------G 50
Query 221 CTTTAAACAACATTGAAAAAATAGAAAACTTGGAAGGATGTGAAGAGCTGGCAAAACTTGACCTGACTGTGAAT 294
| |||.| ..|||| ||||||||||||||||||||||||||||||||||||||
Sbjct 51 C---------CATGG-------------GCTGGA--GATGTGAAGAGCTGGCAAAACTTGACCTGACTGTGAAT 100
Query 295 TTCATTGGAGAGCTGAGCAGCATTAAAAACTTGCAGCACAATATCCATCTGAAGGAGCTCTTTCTCATGGGGAA 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 101 TTCATTGGAGAGCTGAGCAGCATTAAAAACTTGCAGCACAATATCCATCTGAAGGAGCTCTTTCTCATGGGGAA 174
Query 369 CCCATGTGCTTCCTTTGACCACTATAGGGAGTTCGTGGTAGCAACTCTTCCACAATTAAAGTGGTTGGATGGTA 442
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 CCCATGTGCTTCCTTTGACCACTATAGGGAGTTCGTGGTAGCAACTCTTCCACAATTAAAG------------- 235
Query 443 AAGAAATAGAGCCTTCAGAAAGGATTAAGGCATTGCAGGACTATTCAGTAATTGAACCACAAATCAGAGAGCAG 516
Sbjct 236 -------------------------------------------------------------------------- 235
Query 517 GAAAAAGATCACTGTCTTAAACGAGCCAAACTCAAGGAAGAGGCTCAGAGGAAACACCAAGAAGAGGATAAAAA 590
Sbjct 236 -------------------------------------------------------------------------- 235
Query 591 TGAAGACAAGAGAAGTAACGCAGGCTTTGATGGACGTTGGTACACAGACATCAATGCTACTCTTTCCTCTTTAG 664
|||||||||||
Sbjct 236 ---------------------------------------------------------------TTCCTCTTTAG 246
Query 665 AGAGCAAAGACCACCTACAGGCACCAGACACAGAGGAACACAACACAAAGAAATTAGACAACAGTGAAGATGAC 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 AGAGCAAAGACCACCTACAGGCACCAGACACAGAGGAACACAACACAAAGAAATTAGACAACAGTGAAGATGAC 320
Query 739 TTGGAATTCTGGAATAAGCCCTGTTTGTTTACTCCTGAATCAAGATTGGAAACTCTTAGACACATGGAAAAACA 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 TTGGAATTCTGGAATAAGCCCTGTTTGTTTACTCCTGAATCAAGATTGGAAACTCTTAGACACATGGAAAAACA 394
Query 813 ACGGAAGAAACAGGAAAAATTAAGTGAAAAAAAGAAGAAAGTGAAACCACCCAGGACTTTGATCACTGAAGATG 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 ACGGAAGAAACAGGAAAAATTAAGTGAAAAAAAGAAGAAAGTGAAACCACCCAGGACTTTGATCACTGAAGATG 468
Query 887 GGAAAGCCCTAAATGTGAATGAGCCCAAAATTGACTTCTCTTTGAAAGATAACGAAAAGCAGATCATCCTGGAC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 GGAAAGCCCTAAATGTGAATGAGCCCAAAATTGACTTCTCTTTGAAAGATAACGAAAAGCAGATCATCCTGGAC 542
Query 961 CTTGCTGTCTATAGGTATATGGATACCTCTTTAATCGATGTTGATGTGCAACCAACTTACGTGCGAGTAATGAT 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 CTTGCTGTCTATAGGTATATGGATACCTCTTTAATCGATGTTGATGTGCAACCAACTTACGTGCGAGTAATGAT 616
Query 1035 CAAAGGAAAGCCATTTCAGCTTGTCCTTCCTGCAGAAGTGAAACCCGATAGTAGTTCTGCTAAAAGATCTCAGA 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 CAAAGGAAAGCCATTTCAGCTTGTCCTTCCTGCAGAAGTGAAACCCGATAGTAGTTCTGCTAAAAGATCTCAGA 690
Query 1109 CAACGGGTCATTTGGTCATCTGCATGCCCAAGGTAGGAGAAGTAATCACAGGTGGTCAGCGAGCATTCAAATCT 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 CAACGGGTCATTTGGTCATCTGCATGCCCAAGGTAGGAGAAGTAATCACAGGTGGTCAGCGAGCATTCAAATCT 764
Query 1183 ATGAAAACTACCTCGGACAGGAGCAGAGAACAAACAAATACAAGAAGCAAGCACATGGAGAAACTAGAAGTAGA 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 ATGAAAACTACCTCGGACAGGAGCAGAGAACAAACAAATACAAGAAGCAAGCACATGGAGAAACTAGAAGTAGA 838
Query 1257 CCCTAGCAAGCACTCATTCCCTGATGTGACTAACATAGTTCAAGAGAAAAAACACACACCCAGAAGACGACCTG 1330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CCCTAGCAAGCACTCATTCCCTGATGTGACTAACATAGTTCAAGAGAAAAAACACACACCCAGAAGACGACCTG 912
Query 1331 AACCCAAAATTATACCAAGTGAGGAAGACCCAACCTTTGAAGACAACCCTGAAGTGCCTCCGCTGATT------ 1398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 AACCCAAAATTATACCAAGTGAGGAAGACCCAACCTTTGAAGACAACCCTGAAGTGCCTCCGCTGATTTGAAAC 986
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 987 ATCTGGCTGCGTTGCCATTGGCTGAGACCCACCAGGTCCAGTTTTGGTTGGTGTAGAGACCATATGCATATTAT 1060
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 1061 TCCTGGGATAAACACAGAGTTATTTGTCAATATCGCTGCTCCAGTGTTTTAACTCTTACTTTGCATAGTAATAT 1134
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 1135 CCTTAAGATAGCTTAAAATTAAAATGTATGTCTTAAATGCTATAACTCATCATTTACCTATAATAAAGGGTTGG 1208
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 1209 TATTGAAAATGTTTAGTAAGATCATAGAACTATTGCATAAAACACTGATTATAAATACTGTCTACTTATGCAAA 1282
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 1283 GTATTAATTCATAGATAAAAGGACTGAGTATTAAATTGGTACTTCAGCAAAGTGGTCAAGCTTAGAAGTTAAAA 1356
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 1357 CTGTAATTTCAGACCCAATTGGAATACTTTAATATGATTTTAAACAGCATTTCCATTTTCCTTCCCATGATGTG 1430
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 1431 TCTGCTTTCTCTGGTGGCATGGTATAATGGCAAGAATATGAGTTTTGAAACCAGACACTCTATATTTGGATTCC 1504
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 1505 AGCTCAATCACTTTGTAAAGACCTTCAGCAAGTCCTTTAATTCTCTGAGCCTTAGTGGCTTCATGTATAATCTG 1578
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 1579 GGAATAATAACACTTGCCTCACAGGTTTGTCTCAAGATAAACTGCAGAAAGCACTTAGTACAGTGTCAGCCATA 1652
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 1653 CATTTAGAGCCTCTTCTCTCTCTCCTTCTTCCCTTTCTCCTCTCTCTTCTCCTCCCTTTCTCCTGTCTCTCCTC 1726
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 1727 CTCCCTGCTCCTTCTTCCCCTCCCTCCCCAATTACTTTTCTCCCCTTATTCTTTTTCTTCACCTTTTTACTCCC 1800
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 1801 CATCCCACTCCTTCTCCTCTATTTCCTTCTTTACTTTTTTAATATCCTACCTCTTCTTTATCTAGAACATTATG 1874
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 1875 AATTCAATATTTCACATACATTGTAGGACAAATTACTGTTACTCTGATCATGATATAGCAACATTTAAGTCAGT 1948
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 1949 TTCCCCAAATATTCATTCAACAAATACTTATTGAGCAACTATTGAGTGCTAGCCCCCTCTCTGTTCATCAGGGA 2022
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2023 TTTAGTAGTAACAAAGCAGACAAATACATACACACAGACTATGTCAGGTGGTGTTCAGAGCTGTGAAGGAGAGT 2096
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2097 CAGAGTGAGGGAATCAAGGGTGATGGGTGCTTTTTCAGACAGGGCCTTTCTCTATTAAACAGGCTTCCAGTGGA 2170
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2171 AGACTCTGCTAATGTTTAGCAGATAACCAAAATGCATCAGTTAGAAAAAAATATGATGAGAATGAGGGACTGGT 2244
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2245 TATAGGAATGCAATTGGGCACAAATGTGGGAAGAGCTGGGTAGTGAAGCTCTAGAAGGGAGAGGTAGAGAATTG 2318
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2319 GAAGAAGAAGCACTGGTACAGGTAGACAATTCAGAACTTGCACAGAATCTGAGAAGCTGAAGTAGGACTGTGAT 2392
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2393 TGGGAGCTTGTGGAGAGGTCTATGGAAATTATCATGCTGCTGAAATTGTTGCCTCTATTTATCTGCTACCCTTC 2466
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2467 TGGTCCGTGGCCAAGATCCTGGTGGGTGGGCTTGGAGCCAGCCTTCGTCAGCAGGCCTGCGGTAAGAAAGATGG 2540
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2541 GATGGACACACAGTGGTGGAGATCAAGGATCAGCTGCAGCAGGCTGGGTCCCTCTGCATCTGTCCATCACTGCG 2614
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2615 ACTGATGGCAATGACTGAGTATAACACCTTTCTTCATGGTCAACTCTACCCAGGAACCACGTAGGGAAGGAAAT 2688
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2689 TCTGGAAAACAGCTCCCAGCCTTAGCCAACTTGACATATCATAATCCAACAGAACTCAACCTCTACCAACTTGG 2762
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2763 AAATCATGTACATTTGTCAGGACTGTATTTAATTTCCACATAGAGAGAAAGCAAAATTATACTTTTGACCAAAC 2836
Query 1399 ------------------------------------- 1398
Sbjct 2837 TAATAGAATTATCCATTAAACAAACAAAACTGTGCCA 2873
