Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_02816
Subject:
NR_135906.2
Aligned Length:
3293
Identities:
964
Gaps:
2315

Alignment

Query    1  ATGGGCTGGATCACAGAAGATCTTATTAGACGGAATGCTGAACACAACGACTGTGTCATTTTTTCCCTGGAGGA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  ACTCTCGTTGCATCAGCAAGAAATAGAAAGACTAGAACACATT-GATAAATGGTGCCGGGATTTAAAAATTCTC  147
                                                 ..|||| ||     ||| |||||            ||
Sbjct    1  -------------------------------------GTCATTCGA-----GGT-CCGGG------------TC  19

Query  148  TATCTT-CAAAATAATCTTATTGGGAAAATTGAAAATGTTAGCAAACTCAAGAAACTTGAATATTTGAATTTAG  220
            ...||| |              |||            ||.|||.||||..|||..|                 |
Sbjct   20  CGGCTTGC--------------GGG------------GTCAGCGAACTGGAGAGGC-----------------G  50

Query  221  CTTTAAACAACATTGAAAAAATAGAAAACTTGGAAGGATGTGAAGAGCTGGCAAAACTTGACCTGACTGTGAAT  294
            |         |||.|             ..||||  ||||||||||||||||||||||||||||||||||||||
Sbjct   51  C---------CATGG-------------GCTGGA--GATGTGAAGAGCTGGCAAAACTTGACCTGACTGTGAAT  100

Query  295  TTCATTGGAGAGCTGAGCAGCATTAAAAACTTGCAGCACAATATCCATCTGAAGGAGCTCTTTCTCATGGGGAA  368
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  101  TTCATTGGAGAGCTGAGCAGCATTAAAAACTTGCAGCACAATATCCATCTGAAGGAGCTCTTTCTCATGGGGAA  174

Query  369  CCCATGTGCTTCCTTTGACCACTATAGGGAGTTCGTGGTAGCAACTCTTCCACAATTAAAGTGGTTGGATGGTA  442
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
Sbjct  175  CCCATGTGCTTCCTTTGACCACTATAGGGAGTTCGTGGTAGCAACTCTTCCACAATTAAAG-------------  235

Query  443  AAGAAATAGAGCCTTCAGAAAGGATTAAGGCATTGCAGGACTATTCAGTAATTGAACCACAAATCAGAGAGCAG  516
                                                                                      
Sbjct  236  --------------------------------------------------------------------------  235

Query  517  GAAAAAGATCACTGTCTTAAACGAGCCAAACTCAAGGAAGAGGCTCAGAGGAAACACCAAGAAGAGGATAAAAA  590
                                                                                      
Sbjct  236  --------------------------------------------------------------------------  235

Query  591  TGAAGACAAGAGAAGTAACGCAGGCTTTGATGGACGTTGGTACACAGACATCAATGCTACTCTTTCCTCTTTAG  664
                                                                           |||||||||||
Sbjct  236  ---------------------------------------------------------------TTCCTCTTTAG  246

Query  665  AGAGCAAAGACCACCTACAGGCACCAGACACAGAGGAACACAACACAAAGAAATTAGACAACAGTGAAGATGAC  738
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  247  AGAGCAAAGACCACCTACAGGCACCAGACACAGAGGAACACAACACAAAGAAATTAGACAACAGTGAAGATGAC  320

Query  739  TTGGAATTCTGGAATAAGCCCTGTTTGTTTACTCCTGAATCAAGATTGGAAACTCTTAGACACATGGAAAAACA  812
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  321  TTGGAATTCTGGAATAAGCCCTGTTTGTTTACTCCTGAATCAAGATTGGAAACTCTTAGACACATGGAAAAACA  394

Query  813  ACGGAAGAAACAGGAAAAATTAAGTGAAAAAAAGAAGAAAGTGAAACCACCCAGGACTTTGATCACTGAAGATG  886
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  395  ACGGAAGAAACAGGAAAAATTAAGTGAAAAAAAGAAGAAAGTGAAACCACCCAGGACTTTGATCACTGAAGATG  468

Query  887  GGAAAGCCCTAAATGTGAATGAGCCCAAAATTGACTTCTCTTTGAAAGATAACGAAAAGCAGATCATCCTGGAC  960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  469  GGAAAGCCCTAAATGTGAATGAGCCCAAAATTGACTTCTCTTTGAAAGATAACGAAAAGCAGATCATCCTGGAC  542

Query  961  CTTGCTGTCTATAGGTATATGGATACCTCTTTAATCGATGTTGATGTGCAACCAACTTACGTGCGAGTAATGAT  1034
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  543  CTTGCTGTCTATAGGTATATGGATACCTCTTTAATCGATGTTGATGTGCAACCAACTTACGTGCGAGTAATGAT  616

Query 1035  CAAAGGAAAGCCATTTCAGCTTGTCCTTCCTGCAGAAGTGAAACCCGATAGTAGTTCTGCTAAAAGATCTCAGA  1108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  617  CAAAGGAAAGCCATTTCAGCTTGTCCTTCCTGCAGAAGTGAAACCCGATAGTAGTTCTGCTAAAAGATCTCAGA  690

Query 1109  CAACGGGTCATTTGGTCATCTGCATGCCCAAGGTAGGAGAAGTAATCACAGGTGGTCAGCGAGCATTCAAATCT  1182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  691  CAACGGGTCATTTGGTCATCTGCATGCCCAAGGTAGGAGAAGTAATCACAGGTGGTCAGCGAGCATTCAAATCT  764

Query 1183  ATGAAAACTACCTCGGACAGGAGCAGAGAACAAACAAATACAAGAAGCAAGCACATGGAGAAACTAGAAGTAGA  1256
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  765  ATGAAAACTACCTCGGACAGGAGCAGAGAACAAACAAATACAAGAAGCAAGCACATGGAGAAACTAGAAGTAGA  838

Query 1257  CCCTAGCAAGCACTCATTCCCTGATGTGACTAACATAGTTCAAGAGAAAAAACACACACCCAGAAGACGACCTG  1330
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  839  CCCTAGCAAGCACTCATTCCCTGATGTGACTAACATAGTTCAAGAGAAAAAACACACACCCAGAAGACGACCTG  912

Query 1331  AACCCAAAATTATACCAAGTGAGGAAGACCCAACCTTTGAAGACAACCCTGAAGTGCCTCCGCTGATT------  1398
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct  913  AACCCAAAATTATACCAAGTGAGGAAGACCCAACCTTTGAAGACAACCCTGAAGTGCCTCCGCTGATTTGAAAC  986

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct  987  ATCTGGCTGCGTTGCCATTGGCTGAGACCCACCAGGTCCAGTTTTGGTTGGTGTAGAGACCATATGCATATTAT  1060

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1061  TCCTGGGATAAACACAGAGTTATTTGTCAATATCGCTGCTCCAGTGTTTTAACTCTTACTTTGCATAGTAATAT  1134

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1135  CCTTAAGATAGCTTAAAATTAAAATGTATGTCTTAAATGCTATAACTCATCATTTACCTATAATAAAGGGTTGG  1208

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1209  TATTGAAAATGTTTAGTAAGATCATAGAACTATTGCATAAAACACTGATTATAAATACTGTCTACTTATGCAAA  1282

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1283  GTATTAATTCATAGATAAAAGGACTGAGTATTAAATTGGTACTTCAGCAAAGTGGTCAAGCTTAGAAGTTAAAA  1356

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1357  CTGTAATTTCAGACCCAATTGGAATACTTTAATATGATTTTAAACAGCATTTCCATTTTCCTTCCCATGATGTG  1430

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1431  TCTGCTTTCTCTGGTGGCATGGTATAATGGCAAGAATATGAGTTTTGAAACCAGACACTCTATATTTGGATTCC  1504

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1505  AGCTCAATCACTTTGTAAAGACCTTCAGCAAGTCCTTTAATTCTCTGAGCCTTAGTGGCTTCATGTATAATCTG  1578

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1579  GGAATAATAACACTTGCCTCACAGGTTTGTCTCAAGATAAACTGCAGAAAGCACTTAGTACAGTGTCAGCCATA  1652

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1653  CATTTAGAGCCTCTTCTCTCTCTCCTTCTTCCCTTTCTCCTCTCTCTTCTCCTCCCTTTCTCCTGTCTCTCCTC  1726

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1727  CTCCCTGCTCCTTCTTCCCCTCCCTCCCCAATTACTTTTCTCCCCTTATTCTTTTTCTTCACCTTTTTACTCCC  1800

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1801  CATCCCACTCCTTCTCCTCTATTTCCTTCTTTACTTTTTTAATATCCTACCTCTTCTTTATCTAGAACATTATG  1874

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1875  AATTCAATATTTCACATACATTGTAGGACAAATTACTGTTACTCTGATCATGATATAGCAACATTTAAGTCAGT  1948

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1949  TTCCCCAAATATTCATTCAACAAATACTTATTGAGCAACTATTGAGTGCTAGCCCCCTCTCTGTTCATCAGGGA  2022

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2023  TTTAGTAGTAACAAAGCAGACAAATACATACACACAGACTATGTCAGGTGGTGTTCAGAGCTGTGAAGGAGAGT  2096

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2097  CAGAGTGAGGGAATCAAGGGTGATGGGTGCTTTTTCAGACAGGGCCTTTCTCTATTAAACAGGCTTCCAGTGGA  2170

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2171  AGACTCTGCTAATGTTTAGCAGATAACCAAAATGCATCAGTTAGAAAAAAATATGATGAGAATGAGGGACTGGT  2244

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2245  TATAGGAATGCAATTGGGCACAAATGTGGGAAGAGCTGGGTAGTGAAGCTCTAGAAGGGAGAGGTAGAGAATTG  2318

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2319  GAAGAAGAAGCACTGGTACAGGTAGACAATTCAGAACTTGCACAGAATCTGAGAAGCTGAAGTAGGACTGTGAT  2392

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2393  TGGGAGCTTGTGGAGAGGTCTATGGAAATTATCATGCTGCTGAAATTGTTGCCTCTATTTATCTGCTACCCTTC  2466

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2467  TGGTCCGTGGCCAAGATCCTGGTGGGTGGGCTTGGAGCCAGCCTTCGTCAGCAGGCCTGCGGTAAGAAAGATGG  2540

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2541  GATGGACACACAGTGGTGGAGATCAAGGATCAGCTGCAGCAGGCTGGGTCCCTCTGCATCTGTCCATCACTGCG  2614

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2615  ACTGATGGCAATGACTGAGTATAACACCTTTCTTCATGGTCAACTCTACCCAGGAACCACGTAGGGAAGGAAAT  2688

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2689  TCTGGAAAACAGCTCCCAGCCTTAGCCAACTTGACATATCATAATCCAACAGAACTCAACCTCTACCAACTTGG  2762

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2763  AAATCATGTACATTTGTCAGGACTGTATTTAATTTCCACATAGAGAGAAAGCAAAATTATACTTTTGACCAAAC  2836

Query 1399  -------------------------------------  1398
                                                 
Sbjct 2837  TAATAGAATTATCCATTAAACAAACAAAACTGTGCCA  2873

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