Construct: ORF ccsbBroadEn_02816
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000536.1_s300c1, BRDN0000456427
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LRRC6 (23639)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23639 | LRRC6 | leucine rich repeat contain... | NM_012472.6 | 100% | 100% | |
| 2 | human | 23639 | LRRC6 | leucine rich repeat contain... | XM_006716538.3 | 98.5% | 97.8% | 4T>G;6_10delTGTAAinsC;15_28del |
| 3 | human | 23639 | LRRC6 | leucine rich repeat contain... | NM_001321961.2 | 95.7% | 95.7% | 914_915ins60 |
| 4 | human | 23639 | LRRC6 | leucine rich repeat contain... | XM_011516950.2 | 94.3% | 93.6% | (many diffs) |
| 5 | human | 23639 | LRRC6 | leucine rich repeat contain... | XM_017013296.1 | 90.6% | 87.8% | (many diffs) |
| 6 | human | 23639 | LRRC6 | leucine rich repeat contain... | NM_001321962.2 | 82.1% | 81.4% | (many diffs) |
| 7 | human | 23639 | LRRC6 | leucine rich repeat contain... | NM_001321963.2 | 74.2% | 74.2% | 0_1ins360 |
| 8 | human | 23639 | LRRC6 | leucine rich repeat contain... | NM_001321964.2 | 74.2% | 74.2% | 0_1ins360 |
| 9 | human | 23639 | LRRC6 | leucine rich repeat contain... | NM_001321965.2 | 74.2% | 74.2% | 0_1ins360 |
| 10 | human | 23639 | LRRC6 | leucine rich repeat contain... | XM_017013297.1 | 74.2% | 74.2% | 0_1ins360 |
| 11 | human | 23639 | LRRC6 | leucine rich repeat contain... | XM_017013298.1 | 74.2% | 74.2% | 0_1ins360 |
| 12 | human | 23639 | LRRC6 | leucine rich repeat contain... | NM_001321966.2 | 69.9% | 69.9% | 0_1ins360;554_555ins60 |
| 13 | human | 23639 | LRRC6 | leucine rich repeat contain... | NR_073525.3 | 40.2% | (many diffs) | |
| 14 | human | 23639 | LRRC6 | leucine rich repeat contain... | NR_135907.2 | 35.1% | 1_52del;481_482ins224;1227_3119del | |
| 15 | human | 23639 | LRRC6 | leucine rich repeat contain... | NR_135909.2 | 32.9% | (many diffs) | |
| 16 | human | 23639 | LRRC6 | leucine rich repeat contain... | NR_135905.2 | 32.1% | (many diffs) | |
| 17 | human | 23639 | LRRC6 | leucine rich repeat contain... | NR_135910.2 | 30% | (many diffs) | |
| 18 | human | 23639 | LRRC6 | leucine rich repeat contain... | NR_135906.2 | 29.2% | (many diffs) | |
| 19 | human | 23639 | LRRC6 | leucine rich repeat contain... | NR_135913.2 | 27.4% | (many diffs) | |
| 20 | human | 23639 | LRRC6 | leucine rich repeat contain... | NR_135911.2 | 27% | (many diffs) | |
| 21 | human | 23639 | LRRC6 | leucine rich repeat contain... | NR_135912.2 | 25.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1464
- ORF length:
- 1398
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG CTGGATCACA GAAGATCTTA TTAGACGGAA TGCTGAACAC AACGACTGTG 121 TCATTTTTTC CCTGGAGGAA CTCTCGTTGC ATCAGCAAGA AATAGAAAGA CTAGAACACA 181 TTGATAAATG GTGCCGGGAT TTAAAAATTC TCTATCTTCA AAATAATCTT ATTGGGAAAA 241 TTGAAAATGT TAGCAAACTC AAGAAACTTG AATATTTGAA TTTAGCTTTA AACAACATTG 301 AAAAAATAGA AAACTTGGAA GGATGTGAAG AGCTGGCAAA ACTTGACCTG ACTGTGAATT 361 TCATTGGAGA GCTGAGCAGC ATTAAAAACT TGCAGCACAA TATCCATCTG AAGGAGCTCT 421 TTCTCATGGG GAACCCATGT GCTTCCTTTG ACCACTATAG GGAGTTCGTG GTAGCAACTC 481 TTCCACAATT AAAGTGGTTG GATGGTAAAG AAATAGAGCC TTCAGAAAGG ATTAAGGCAT 541 TGCAGGACTA TTCAGTAATT GAACCACAAA TCAGAGAGCA GGAAAAAGAT CACTGTCTTA 601 AACGAGCCAA ACTCAAGGAA GAGGCTCAGA GGAAACACCA AGAAGAGGAT AAAAATGAAG 661 ACAAGAGAAG TAACGCAGGC TTTGATGGAC GTTGGTACAC AGACATCAAT GCTACTCTTT 721 CCTCTTTAGA GAGCAAAGAC CACCTACAGG CACCAGACAC AGAGGAACAC AACACAAAGA 781 AATTAGACAA CAGTGAAGAT GACTTGGAAT TCTGGAATAA GCCCTGTTTG TTTACTCCTG 841 AATCAAGATT GGAAACTCTT AGACACATGG AAAAACAACG GAAGAAACAG GAAAAATTAA 901 GTGAAAAAAA GAAGAAAGTG AAACCACCCA GGACTTTGAT CACTGAAGAT GGGAAAGCCC 961 TAAATGTGAA TGAGCCCAAA ATTGACTTCT CTTTGAAAGA TAACGAAAAG CAGATCATCC 1021 TGGACCTTGC TGTCTATAGG TATATGGATA CCTCTTTAAT CGATGTTGAT GTGCAACCAA 1081 CTTACGTGCG AGTAATGATC AAAGGAAAGC CATTTCAGCT TGTCCTTCCT GCAGAAGTGA 1141 AACCCGATAG TAGTTCTGCT AAAAGATCTC AGACAACGGG TCATTTGGTC ATCTGCATGC 1201 CCAAGGTAGG AGAAGTAATC ACAGGTGGTC AGCGAGCATT CAAATCTATG AAAACTACCT 1261 CGGACAGGAG CAGAGAACAA ACAAATACAA GAAGCAAGCA CATGGAGAAA CTAGAAGTAG 1321 ACCCTAGCAA GCACTCATTC CCTGATGTGA CTAACATAGT TCAAGAGAAA AAACACACAC 1381 CCAGAAGACG ACCTGAACCC AAAATTATAC CAAGTGAGGA AGACCCAACC TTTGAAGACA 1441 ACCCTGAAGT GCCTCCGCTG ATTTGCCCAA CTTTCTTGTA CAAAGTTGGc attataagaa 1501 agcattgctt atcaatttgt tgcaacgaac