Construct: ORF ccsbBroadEn_02816

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000536.1_s300c1, BRDN0000456427
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LRRC6 (23639)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23639 LRRC6 leucine rich repeat contain... NM_012472.6 100% 100%
2 human 23639 LRRC6 leucine rich repeat contain... XM_006716538.3 98.5% 97.8% 4T>G;6_10delTGTAAinsC;15_28del
3 human 23639 LRRC6 leucine rich repeat contain... NM_001321961.2 95.7% 95.7% 914_915ins60
4 human 23639 LRRC6 leucine rich repeat contain... XM_011516950.2 94.3% 93.6% (many diffs)
5 human 23639 LRRC6 leucine rich repeat contain... XM_017013296.1 90.6% 87.8% (many diffs)
6 human 23639 LRRC6 leucine rich repeat contain... NM_001321962.2 82.1% 81.4% (many diffs)
7 human 23639 LRRC6 leucine rich repeat contain... NM_001321963.2 74.2% 74.2% 0_1ins360
8 human 23639 LRRC6 leucine rich repeat contain... NM_001321964.2 74.2% 74.2% 0_1ins360
9 human 23639 LRRC6 leucine rich repeat contain... NM_001321965.2 74.2% 74.2% 0_1ins360
10 human 23639 LRRC6 leucine rich repeat contain... XM_017013297.1 74.2% 74.2% 0_1ins360
11 human 23639 LRRC6 leucine rich repeat contain... XM_017013298.1 74.2% 74.2% 0_1ins360
12 human 23639 LRRC6 leucine rich repeat contain... NM_001321966.2 69.9% 69.9% 0_1ins360;554_555ins60
13 human 23639 LRRC6 leucine rich repeat contain... NR_073525.3 40.2% (many diffs)
14 human 23639 LRRC6 leucine rich repeat contain... NR_135907.2 35.1% 1_52del;481_482ins224;1227_3119del
15 human 23639 LRRC6 leucine rich repeat contain... NR_135909.2 32.9% (many diffs)
16 human 23639 LRRC6 leucine rich repeat contain... NR_135905.2 32.1% (many diffs)
17 human 23639 LRRC6 leucine rich repeat contain... NR_135910.2 30% (many diffs)
18 human 23639 LRRC6 leucine rich repeat contain... NR_135906.2 29.2% (many diffs)
19 human 23639 LRRC6 leucine rich repeat contain... NR_135913.2 27.4% (many diffs)
20 human 23639 LRRC6 leucine rich repeat contain... NR_135911.2 27% (many diffs)
21 human 23639 LRRC6 leucine rich repeat contain... NR_135912.2 25.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1464
ORF length:
1398
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG CTGGATCACA GAAGATCTTA TTAGACGGAA TGCTGAACAC AACGACTGTG
121TCATTTTTTC CCTGGAGGAA CTCTCGTTGC ATCAGCAAGA AATAGAAAGA CTAGAACACA
181TTGATAAATG GTGCCGGGAT TTAAAAATTC TCTATCTTCA AAATAATCTT ATTGGGAAAA
241TTGAAAATGT TAGCAAACTC AAGAAACTTG AATATTTGAA TTTAGCTTTA AACAACATTG
301AAAAAATAGA AAACTTGGAA GGATGTGAAG AGCTGGCAAA ACTTGACCTG ACTGTGAATT
361TCATTGGAGA GCTGAGCAGC ATTAAAAACT TGCAGCACAA TATCCATCTG AAGGAGCTCT
421TTCTCATGGG GAACCCATGT GCTTCCTTTG ACCACTATAG GGAGTTCGTG GTAGCAACTC
481TTCCACAATT AAAGTGGTTG GATGGTAAAG AAATAGAGCC TTCAGAAAGG ATTAAGGCAT
541TGCAGGACTA TTCAGTAATT GAACCACAAA TCAGAGAGCA GGAAAAAGAT CACTGTCTTA
601AACGAGCCAA ACTCAAGGAA GAGGCTCAGA GGAAACACCA AGAAGAGGAT AAAAATGAAG
661ACAAGAGAAG TAACGCAGGC TTTGATGGAC GTTGGTACAC AGACATCAAT GCTACTCTTT
721CCTCTTTAGA GAGCAAAGAC CACCTACAGG CACCAGACAC AGAGGAACAC AACACAAAGA
781AATTAGACAA CAGTGAAGAT GACTTGGAAT TCTGGAATAA GCCCTGTTTG TTTACTCCTG
841AATCAAGATT GGAAACTCTT AGACACATGG AAAAACAACG GAAGAAACAG GAAAAATTAA
901GTGAAAAAAA GAAGAAAGTG AAACCACCCA GGACTTTGAT CACTGAAGAT GGGAAAGCCC
961TAAATGTGAA TGAGCCCAAA ATTGACTTCT CTTTGAAAGA TAACGAAAAG CAGATCATCC
1021TGGACCTTGC TGTCTATAGG TATATGGATA CCTCTTTAAT CGATGTTGAT GTGCAACCAA
1081CTTACGTGCG AGTAATGATC AAAGGAAAGC CATTTCAGCT TGTCCTTCCT GCAGAAGTGA
1141AACCCGATAG TAGTTCTGCT AAAAGATCTC AGACAACGGG TCATTTGGTC ATCTGCATGC
1201CCAAGGTAGG AGAAGTAATC ACAGGTGGTC AGCGAGCATT CAAATCTATG AAAACTACCT
1261CGGACAGGAG CAGAGAACAA ACAAATACAA GAAGCAAGCA CATGGAGAAA CTAGAAGTAG
1321ACCCTAGCAA GCACTCATTC CCTGATGTGA CTAACATAGT TCAAGAGAAA AAACACACAC
1381CCAGAAGACG ACCTGAACCC AAAATTATAC CAAGTGAGGA AGACCCAACC TTTGAAGACA
1441ACCCTGAAGT GCCTCCGCTG ATTTGCCCAA CTTTCTTGTA CAAAGTTGGc attataagaa
1501agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)

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