Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_02816
- Subject:
- NR_135909.2
- Aligned Length:
- 3553
- Identities:
- 1171
- Gaps:
- 2379
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTCATTCGAGGTCCGGGTCCGGCTTGCGGGGTCAGCGAACTGGAGAGGCGCCATGGGCTGGAGTAAGCCCCCCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCACCTTCCGTCCTCGATCGTTCCCCTTGTGGAAGTAGTCCCGGGTCTCGTGGGATCCTCGCCGCCCGCTCCCG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCCTGCGCTGTCGGTTCCCCCGCGCCTGGGCGGACCCTAACCCCACCCGGCCCTCCGCACCGCAGCCCCGGCTG 222
Query 1 -----------------ATGGGCTGGA-----------------------TCACAGAAGATCTTATTAGACGGA 34
|..|||.||| ||||||||||||||||||||||||
Sbjct 223 CACCAGGTCCTCTGCAGACTGGCCGGACAGCCTGGCCTTTTCCAGCTCAGTCACAGAAGATCTTATTAGACGGA 296
Query 35 ATGCTGAACACAACGACTGTGTCATTTTTTCCCTGGAGGAACTCTCGTTGCATCAGCAAGAAATAGAAAGACTA 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ATGCTGAACACAACGACTGTGTCATTTTTTCCCTGGAGGAACTCTCGTTGCATCAGCAAGAAATAGAAAGACTA 370
Query 109 GAACACATTGATAAATGGTGCCGGGATTTAAAAATTCTCTATCTTCAAAATAATCTTATTGGGAAAATTGAAAA 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GAACACATTGATAAATGGTGCCGGGATTTAAAAATTCTCTATCTTCAAAATAATCTTATTGGGAAAATTGAAAA 444
Query 183 TGTTAGCAAACTCAAGAAACTTGAATATTTGAATTTAGCTTTAAACAACATTGAAAAAATAGAAAACTTGGAAG 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TGTTAGCAAACTCAAGAAACTTGAATATTTGAATTTAGCTTTAAACAACATTGAAAAAATAGAAAACTTGGAAG 518
Query 257 GATGTGAAGAGCTGGCAAAACTTGACCTGACTGTGAATTTCATTGGAGAGCTGAGCAGCATTAAAAACTTGCAG 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GATGTGAAGAGCTGGCAAAACTTGACCTGACTGTGAATTTCATTGGAGAGCTGAGCAGCATTAAAAACTTGCAG 592
Query 331 CACAATATCCATCTGAAGGAGCTCTTTCTCATGGGGAACCCATGTGCTTCCTTTGACCACTATAGGGAGTTCGT 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CACAATATCCATCTGAAGGAGCTCTTTCTCATGGGGAACCCATGTGCTTCCTTTGACCACTATAGGGAGTTCGT 666
Query 405 GGTAGCAACTCTTCCACAATTAAAGTGGTTGGATGGTAAAGAAATAGAGCCTTCAGAAAGGATTAAGGCATTGC 478
|||||||||||||||||||||||||
Sbjct 667 GGTAGCAACTCTTCCACAATTAAAG------------------------------------------------- 691
Query 479 AGGACTATTCAGTAATTGAACCACAAATCAGAGAGCAGGAAAAAGATCACTGTCTTAAACGAGCCAAACTCAAG 552
Sbjct 692 -------------------------------------------------------------------------- 691
Query 553 GAAGAGGCTCAGAGGAAACACCAAGAAGAGGATAAAAATGAAGACAAGAGAAGTAACGCAGGCTTTGATGGACG 626
Sbjct 692 -------------------------------------------------------------------------- 691
Query 627 TTGGTACACAGACATCAATGCTACTCTTTCCTCTTTAGAGAGCAAAGACCACCTACAGGCACCAGACACAGAGG 700
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 ---------------------------TTCCTCTTTAGAGAGCAAAGACCACCTACAGGCACCAGACACAGAGG 738
Query 701 AACACAACACAAAGAAATTAGACAACAGTGAAGATGACTTGGAATTCTGGAATAAGCCCTGTTTGTTTACTCCT 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 AACACAACACAAAGAAATTAGACAACAGTGAAGATGACTTGGAATTCTGGAATAAGCCCTGTTTGTTTACTCCT 812
Query 775 GAATCAAGATTGGAAACTCTTAGACACATGGAAAAACAACGGAAGAAACAGGAAAAATTAAGTGAAAAAAAGAA 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 GAATCAAGATTGGAAACTCTTAGACACATGGAAAAACAACGGAAGAAACAGGAAAAATTAAGTGAAAAAAAGAA 886
Query 849 GAAAGTGAAACCACCCAGGACTTTGATCACTGAAGATGGGAAAGCCCTAAATGTGAATGAGCCCAAAATTGACT 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 GAAAGTGAAACCACCCAGGACTTTGATCACTGAAGATGGGAAAGCCCTAAATGTGAATGAGCCCAAAATTGACT 960
Query 923 TCTCTTTGAAAGATAACGAAAAGCAGATCATCCTGGACCTTGCTGTCTATAGGTATATGGATACCTCTTTAATC 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TCTCTTTGAAAGATAACGAAAAGCAGATCATCCTGGACCTTGCTGTCTATAGGTATATGGATACCTCTTTAATC 1034
Query 997 GATGTTGATGTGCAACCAACTTACGTGCGAGTAATGATCAAAGGAAAGCCATTTCAGCTTGTCCTTCCTGCAGA 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 GATGTTGATGTGCAACCAACTTACGTGCGAGTAATGATCAAAGGAAAGCCATTTCAGCTTGTCCTTCCTGCAGA 1108
Query 1071 AGTGAAACCCGATAGTAGTTCTGCTAAAAGATCTCAGACAACGGGTCATTTGGTCATCTGCATGCCCAAGGTAG 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 AGTGAAACCCGATAGTAGTTCTGCTAAAAGATCTCAGACAACGGGTCATTTGGTCATCTGCATGCCCAAGGTAG 1182
Query 1145 GAGAAGTAATCACAGGTGGTCAGCGAGCATTCAAATCTATGAAAACTACCTCGGACAGGAGCAGAGAACAAACA 1218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 GAGAAGTAATCACAGGTGGTCAGCGAGCATTCAAATCTATGAAAACTACCTCGGACAGGAGCAGAGAACAAACA 1256
Query 1219 AATACAAGAAGCAAGCACATGGAGAAACTAGAAGTAGACCCTAGCAAGCACTCATTCCCTGATGTGACTAACAT 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 AATACAAGAAGCAAGCACATGGAGAAACTAGAAGTAGACCCTAGCAAGCACTCATTCCCTGATGTGACTAACAT 1330
Query 1293 AGTTCAAGAGAAAAAACACACACCCAGAAGACGACCTGAACCCAAAATTATACCAAGTGAGGAAGACCCAACCT 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1331 AGTTCAAGAGAAAAAACACACACCCAGAAGACGACCTGAACCCAAAATTATACCAAGTGAGGAAGACCCAACCT 1404
Query 1367 TTGAAGACAACCCTGAAGTGCCTCCGCTGATT------------------------------------------ 1398
||||||||||||||||||||||||||||||||
Sbjct 1405 TTGAAGACAACCCTGAAGTGCCTCCGCTGATTTGAAACATCTGGCTGCGTTGCCATTGGCTGAGACCCACCAGG 1478
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 1479 TCCAGTTTTGGTTGGTGTAGAGACCATATGCATATTATTCCTGGGATAAACACAGAGTTATTTGTCAATATCGC 1552
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 1553 TGCTCCAGTGTTTTAACTCTTACTTTGCATAGTAATATCCTTAAGATAGCTTAAAATTAAAATGTATGTCTTAA 1626
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 1627 ATGCTATAACTCATCATTTACCTATAATAAAGGGTTGGTATTGAAAATGTTTAGTAAGATCATAGAACTATTGC 1700
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 1701 ATAAAACACTGATTATAAATACTGTCTACTTATGCAAAGTATTAATTCATAGATAAAAGGACTGAGTATTAAAT 1774
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 1775 TGGTACTTCAGCAAAGTGGTCAAGCTTAGAAGTTAAAACTGTAATTTCAGACCCAATTGGAATACTTTAATATG 1848
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 1849 ATTTTAAACAGCATTTCCATTTTCCTTCCCATGATGTGTCTGCTTTCTCTGGTGGCATGGTATAATGGCAAGAA 1922
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 1923 TATGAGTTTTGAAACCAGACACTCTATATTTGGATTCCAGCTCAATCACTTTGTAAAGACCTTCAGCAAGTCCT 1996
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 1997 TTAATTCTCTGAGCCTTAGTGGCTTCATGTATAATCTGGGAATAATAACACTTGCCTCACAGGTTTGTCTCAAG 2070
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2071 ATAAACTGCAGAAAGCACTTAGTACAGTGTCAGCCATACATTTAGAGCCTCTTCTCTCTCTCCTTCTTCCCTTT 2144
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2145 CTCCTCTCTCTTCTCCTCCCTTTCTCCTGTCTCTCCTCCTCCCTGCTCCTTCTTCCCCTCCCTCCCCAATTACT 2218
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2219 TTTCTCCCCTTATTCTTTTTCTTCACCTTTTTACTCCCCATCCCACTCCTTCTCCTCTATTTCCTTCTTTACTT 2292
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2293 TTTTAATATCCTACCTCTTCTTTATCTAGAACATTATGAATTCAATATTTCACATACATTGTAGGACAAATTAC 2366
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2367 TGTTACTCTGATCATGATATAGCAACATTTAAGTCAGTTTCCCCAAATATTCATTCAACAAATACTTATTGAGC 2440
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2441 AACTATTGAGTGCTAGCCCCCTCTCTGTTCATCAGGGATTTAGTAGTAACAAAGCAGACAAATACATACACACA 2514
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2515 GACTATGTCAGGTGGTGTTCAGAGCTGTGAAGGAGAGTCAGAGTGAGGGAATCAAGGGTGATGGGTGCTTTTTC 2588
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2589 AGACAGGGCCTTTCTCTATTAAACAGGCTTCCAGTGGAAGACTCTGCTAATGTTTAGCAGATAACCAAAATGCA 2662
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2663 TCAGTTAGAAAAAAATATGATGAGAATGAGGGACTGGTTATAGGAATGCAATTGGGCACAAATGTGGGAAGAGC 2736
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2737 TGGGTAGTGAAGCTCTAGAAGGGAGAGGTAGAGAATTGGAAGAAGAAGCACTGGTACAGGTAGACAATTCAGAA 2810
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2811 CTTGCACAGAATCTGAGAAGCTGAAGTAGGACTGTGATTGGGAGCTTGTGGAGAGGTCTATGGAAATTATCATG 2884
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2885 CTGCTGAAATTGTTGCCTCTATTTATCTGCTACCCTTCTGGTCCGTGGCCAAGATCCTGGTGGGTGGGCTTGGA 2958
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2959 GCCAGCCTTCGTCAGCAGGCCTGCGGTAAGAAAGATGGGATGGACACACAGTGGTGGAGATCAAGGATCAGCTG 3032
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3033 CAGCAGGCTGGGTCCCTCTGCATCTGTCCATCACTGCGACTGATGGCAATGACTGAGTATAACACCTTTCTTCA 3106
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3107 TGGTCAACTCTACCCAGGAACCACGTAGGGAAGGAAATTCTGGAAAACAGCTCCCAGCCTTAGCCAACTTGACA 3180
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3181 TATCATAATCCAACAGAACTCAACCTCTACCAACTTGGAAATCATGTACATTTGTCAGGACTGTATTTAATTTC 3254
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3255 CACATAGAGAGAAAGCAAAATTATACTTTTGACCAAACTAATAGAATTATCCATTAAACAAACAAAACTGTGCC 3328
Query 1399 - 1398
Sbjct 3329 A 3329
