Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_02816
Subject:
NR_135910.2
Aligned Length:
3903
Identities:
1172
Gaps:
2729

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTCATTCGAGGTCCGGGTCCGGCTTGCGGGGTCAGCGAACTGGAGAGGCGCCATGGGCTGGAGTAAGCCCCCCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCACCTTCCGTCCTCGATCGTTCCCCTTGTGGAAGTAGTCCCGGGTCTCGTGGGATCCTCGCCGCCCGCTCCCG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCCTGCGCTGTCGGTTCCCCCGCGCCTGGGCGGACCCTAACCCCACCCGGCCCTCCGCACCGCAGCCCCGGCTG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CACCAGGTCCTCTGCAGACTGGCCGGACAGCCTGGCCTTTTCCAGCTCAGGTTCCTAATCTGTAAAATGGGCGG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGCCGTGGGAAGGGGAGGAAGAGGCAGAAAGGCACTGGACTCCAGGAAAGGGGTCGGGGAACGTGCAGGGGTTT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TGGCGCCAGACACACCACGTTCCGGCCAAGTGGCTCCTTACTGGCTGTGAACGTGGGCCAGTCACTGTCTCCAA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GCCGCAATCTTCGGACTCATTCCGGAAGGCAGTGTAGCCTAATGGTGGAGGGTTCCGACTCTGGAGCCAGGGTT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GAAGTCCTCCCTCTTCCTGTGACTTTGAGCGAGTGACTTCACCCCTTGGGCCTCAGCTTCTTCATCTCCAAAAT  592

Query    1  -ATGG----------GCTG---------GATCACAGAAGATCTTATTAGACGGAATGCTGAACACAACGACTGT  54
             ||||          .|||         .|||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  AATGGCAATCATACTACTGTTTTAGACACATCACAGAAGATCTTATTAGACGGAATGCTGAACACAACGACTGT  666

Query   55  GTCATTTTTTCCCTGGAGGAACTCTCGTTGCATCAGCAAGAAATAGAAAGACTAGAACACATTGATAAATGGTG  128
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GTCATTTTTTCCCTGGAGGAACTCTCGTTGCATCAGCAAGAAATAGAAAGACTAGAACACATTGATAAATGGTG  740

Query  129  CCGGGATTTAAAAATTCTCTATCTTCAAAATAATCTTATTGGGAAAATTGAAAATGTTAGCAAACTCAAGAAAC  202
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CCGGGATTTAAAAATTCTCTATCTTCAAAATAATCTTATTGGGAAAATTGAAAATGTTAGCAAACTCAAGAAAC  814

Query  203  TTGAATATTTGAATTTAGCTTTAAACAACATTGAAAAAATAGAAAACTTGGAAGGATGTGAAGAGCTGGCAAAA  276
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TTGAATATTTGAATTTAGCTTTAAACAACATTGAAAAAATAGAAAACTTGGAAGGATGTGAAGAGCTGGCAAAA  888

Query  277  CTTGACCTGACTGTGAATTTCATTGGAGAGCTGAGCAGCATTAAAAACTTGCAGCACAATATCCATCTGAAGGA  350
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CTTGACCTGACTGTGAATTTCATTGGAGAGCTGAGCAGCATTAAAAACTTGCAGCACAATATCCATCTGAAGGA  962

Query  351  GCTCTTTCTCATGGGGAACCCATGTGCTTCCTTTGACCACTATAGGGAGTTCGTGGTAGCAACTCTTCCACAAT  424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GCTCTTTCTCATGGGGAACCCATGTGCTTCCTTTGACCACTATAGGGAGTTCGTGGTAGCAACTCTTCCACAAT  1036

Query  425  TAAAGTGGTTGGATGGTAAAGAAATAGAGCCTTCAGAAAGGATTAAGGCATTGCAGGACTATTCAGTAATTGAA  498
            |||||                                                                     
Sbjct 1037  TAAAG---------------------------------------------------------------------  1041

Query  499  CCACAAATCAGAGAGCAGGAAAAAGATCACTGTCTTAAACGAGCCAAACTCAAGGAAGAGGCTCAGAGGAAACA  572
                                                                                      
Sbjct 1042  --------------------------------------------------------------------------  1041

Query  573  CCAAGAAGAGGATAAAAATGAAGACAAGAGAAGTAACGCAGGCTTTGATGGACGTTGGTACACAGACATCAATG  646
                                                                                      
Sbjct 1042  --------------------------------------------------------------------------  1041

Query  647  CTACTCTTTCCTCTTTAGAGAGCAAAGACCACCTACAGGCACCAGACACAGAGGAACACAACACAAAGAAATTA  720
                   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1042  -------TTCCTCTTTAGAGAGCAAAGACCACCTACAGGCACCAGACACAGAGGAACACAACACAAAGAAATTA  1108

Query  721  GACAACAGTGAAGATGACTTGGAATTCTGGAATAAGCCCTGTTTGTTTACTCCTGAATCAAGATTGGAAACTCT  794
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109  GACAACAGTGAAGATGACTTGGAATTCTGGAATAAGCCCTGTTTGTTTACTCCTGAATCAAGATTGGAAACTCT  1182

Query  795  TAGACACATGGAAAAACAACGGAAGAAACAGGAAAAATTAAGTGAAAAAAAGAAGAAAGTGAAACCACCCAGGA  868
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183  TAGACACATGGAAAAACAACGGAAGAAACAGGAAAAATTAAGTGAAAAAAAGAAGAAAGTGAAACCACCCAGGA  1256

Query  869  CTTTGATCACTGAAGATGGGAAAGCCCTAAATGTGAATGAGCCCAAAATTGACTTCTCTTTGAAAGATAACGAA  942
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257  CTTTGATCACTGAAGATGGGAAAGCCCTAAATGTGAATGAGCCCAAAATTGACTTCTCTTTGAAAGATAACGAA  1330

Query  943  AAGCAGATCATCCTGGACCTTGCTGTCTATAGGTATATGGATACCTCTTTAATCGATGTTGATGTGCAACCAAC  1016
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1331  AAGCAGATCATCCTGGACCTTGCTGTCTATAGGTATATGGATACCTCTTTAATCGATGTTGATGTGCAACCAAC  1404

Query 1017  TTACGTGCGAGTAATGATCAAAGGAAAGCCATTTCAGCTTGTCCTTCCTGCAGAAGTGAAACCCGATAGTAGTT  1090
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1405  TTACGTGCGAGTAATGATCAAAGGAAAGCCATTTCAGCTTGTCCTTCCTGCAGAAGTGAAACCCGATAGTAGTT  1478

Query 1091  CTGCTAAAAGATCTCAGACAACGGGTCATTTGGTCATCTGCATGCCCAAGGTAGGAGAAGTAATCACAGGTGGT  1164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1479  CTGCTAAAAGATCTCAGACAACGGGTCATTTGGTCATCTGCATGCCCAAGGTAGGAGAAGTAATCACAGGTGGT  1552

Query 1165  CAGCGAGCATTCAAATCTATGAAAACTACCTCGGACAGGAGCAGAGAACAAACAAATACAAGAAGCAAGCACAT  1238
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553  CAGCGAGCATTCAAATCTATGAAAACTACCTCGGACAGGAGCAGAGAACAAACAAATACAAGAAGCAAGCACAT  1626

Query 1239  GGAGAAACTAGAAGTAGACCCTAGCAAGCACTCATTCCCTGATGTGACTAACATAGTTCAAGAGAAAAAACACA  1312
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1627  GGAGAAACTAGAAGTAGACCCTAGCAAGCACTCATTCCCTGATGTGACTAACATAGTTCAAGAGAAAAAACACA  1700

Query 1313  CACCCAGAAGACGACCTGAACCCAAAATTATACCAAGTGAGGAAGACCCAACCTTTGAAGACAACCCTGAAGTG  1386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1701  CACCCAGAAGACGACCTGAACCCAAAATTATACCAAGTGAGGAAGACCCAACCTTTGAAGACAACCCTGAAGTG  1774

Query 1387  CCTCCGCTGATT--------------------------------------------------------------  1398
            ||||||||||||                                                              
Sbjct 1775  CCTCCGCTGATTTGAAACATCTGGCTGCGTTGCCATTGGCTGAGACCCACCAGGTCCAGTTTTGGTTGGTGTAG  1848

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1849  AGACCATATGCATATTATTCCTGGGATAAACACAGAGTTATTTGTCAATATCGCTGCTCCAGTGTTTTAACTCT  1922

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1923  TACTTTGCATAGTAATATCCTTAAGATAGCTTAAAATTAAAATGTATGTCTTAAATGCTATAACTCATCATTTA  1996

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1997  CCTATAATAAAGGGTTGGTATTGAAAATGTTTAGTAAGATCATAGAACTATTGCATAAAACACTGATTATAAAT  2070

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2071  ACTGTCTACTTATGCAAAGTATTAATTCATAGATAAAAGGACTGAGTATTAAATTGGTACTTCAGCAAAGTGGT  2144

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2145  CAAGCTTAGAAGTTAAAACTGTAATTTCAGACCCAATTGGAATACTTTAATATGATTTTAAACAGCATTTCCAT  2218

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2219  TTTCCTTCCCATGATGTGTCTGCTTTCTCTGGTGGCATGGTATAATGGCAAGAATATGAGTTTTGAAACCAGAC  2292

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2293  ACTCTATATTTGGATTCCAGCTCAATCACTTTGTAAAGACCTTCAGCAAGTCCTTTAATTCTCTGAGCCTTAGT  2366

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2367  GGCTTCATGTATAATCTGGGAATAATAACACTTGCCTCACAGGTTTGTCTCAAGATAAACTGCAGAAAGCACTT  2440

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2441  AGTACAGTGTCAGCCATACATTTAGAGCCTCTTCTCTCTCTCCTTCTTCCCTTTCTCCTCTCTCTTCTCCTCCC  2514

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2515  TTTCTCCTGTCTCTCCTCCTCCCTGCTCCTTCTTCCCCTCCCTCCCCAATTACTTTTCTCCCCTTATTCTTTTT  2588

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2589  CTTCACCTTTTTACTCCCCATCCCACTCCTTCTCCTCTATTTCCTTCTTTACTTTTTTAATATCCTACCTCTTC  2662

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2663  TTTATCTAGAACATTATGAATTCAATATTTCACATACATTGTAGGACAAATTACTGTTACTCTGATCATGATAT  2736

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2737  AGCAACATTTAAGTCAGTTTCCCCAAATATTCATTCAACAAATACTTATTGAGCAACTATTGAGTGCTAGCCCC  2810

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2811  CTCTCTGTTCATCAGGGATTTAGTAGTAACAAAGCAGACAAATACATACACACAGACTATGTCAGGTGGTGTTC  2884

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2885  AGAGCTGTGAAGGAGAGTCAGAGTGAGGGAATCAAGGGTGATGGGTGCTTTTTCAGACAGGGCCTTTCTCTATT  2958

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2959  AAACAGGCTTCCAGTGGAAGACTCTGCTAATGTTTAGCAGATAACCAAAATGCATCAGTTAGAAAAAAATATGA  3032

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 3033  TGAGAATGAGGGACTGGTTATAGGAATGCAATTGGGCACAAATGTGGGAAGAGCTGGGTAGTGAAGCTCTAGAA  3106

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 3107  GGGAGAGGTAGAGAATTGGAAGAAGAAGCACTGGTACAGGTAGACAATTCAGAACTTGCACAGAATCTGAGAAG  3180

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 3181  CTGAAGTAGGACTGTGATTGGGAGCTTGTGGAGAGGTCTATGGAAATTATCATGCTGCTGAAATTGTTGCCTCT  3254

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 3255  ATTTATCTGCTACCCTTCTGGTCCGTGGCCAAGATCCTGGTGGGTGGGCTTGGAGCCAGCCTTCGTCAGCAGGC  3328

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 3329  CTGCGGTAAGAAAGATGGGATGGACACACAGTGGTGGAGATCAAGGATCAGCTGCAGCAGGCTGGGTCCCTCTG  3402

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 3403  CATCTGTCCATCACTGCGACTGATGGCAATGACTGAGTATAACACCTTTCTTCATGGTCAACTCTACCCAGGAA  3476

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 3477  CCACGTAGGGAAGGAAATTCTGGAAAACAGCTCCCAGCCTTAGCCAACTTGACATATCATAATCCAACAGAACT  3550

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 3551  CAACCTCTACCAACTTGGAAATCATGTACATTTGTCAGGACTGTATTTAATTTCCACATAGAGAGAAAGCAAAA  3624

Query 1399  -------------------------------------------------------  1398
                                                                   
Sbjct 3625  TTATACTTTTGACCAAACTAATAGAATTATCCATTAAACAAACAAAACTGTGCCA  3679

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