Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_02816
Subject:
NR_135911.2
Aligned Length:
4059
Identities:
1097
Gaps:
2921

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTCATTCGAGGTCCGGGTCCGGCTTGCGGGGTCAGCGAACTGGAGAGGCGCCATGGGCTGGAGTAAGCCCCCCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCACCTTCCGTCCTCGATCGTTCCCCTTGTGGAAGTAGTCCCGGGTCTCGTGGGATCCTCGCCGCCCGCTCCCG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCCTGCGCTGTCGGTTCCCCCGCGCCTGGGCGGACCCTAACCCCACCCGGCCCTCCGCACCGCAGCCCCGGCTG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CACCAGGTCCTCTGCAGACTGGCCGGACAGCCTGGCCTTTTCCAGCTCAGGTTCCTAATCTGTAAAATGGGCGG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGCCGTGGGAAGGGGAGGAAGAGGCAGAAAGGCACTGGACTCCAGGAAAGGGGTCGGGGAACGTGCAGGGGTTT  370

Query    1  ----------------------------------------------------ATGGGCTGGATCACAG-----A  17
                                                                .|||||..| ||||.|     |
Sbjct  371  TGGCGCCAGACACACCACGTTCCGGCCAAGTGGCTCCTTACTGGCTGTGAACGTGGGCCAG-TCACTGTCTCCA  443

Query   18  AG-----ATCTT-------ATTAGACGGAATGC--TGAACACAA--------------CGACTGTG--------  55
            ||     |||||       |||  .|||||.||  ||.|..|.|              |||||.||        
Sbjct  444  AGCCGCAATCTTCGGACTCATT--CCGGAAGGCAGTGTAGCCTAATGGTGGAGGGTTCCGACTCTGGAGCCAGG  515

Query   56  ----------TCATTTTTTCCCTG-----------GAGGAACT---CTCGTT--GCATCAGC------------  91
                      ||..|.||  ||||           |||..|||   |.|.||  ||.|||||            
Sbjct  516  GTTGAAGTCCTCCCTCTT--CCTGTGACTTTGAGCGAGTGACTTCACCCCTTGGGCCTCAGCTTCTTCATCTCC  587

Query   92  -AAGAAATAGAA---AGAC--------TAGAACACA-------TTGATAAATGGTGCCGGGATTT---------  137
             ||..|||.|.|   |.||        ||| |||||       || |||||      ||.|.|||         
Sbjct  588  AAAATAATGGCAATCATACTACTGTTTTAG-ACACAGTAAGTGTT-ATAAA------CGTGTTTTTGTTTGTTT  653

Query  138  ---------AAAAATT---CTCTATC------------------------------------------------  151
                     ||.|.||   ||||.||                                                
Sbjct  654  GTTTGAGACAAGAGTTTTGCTCTGTCGCCCAGGCTGGAGTGCAGCGGCGCGATCTCGGCCCACTGCAGCCTCCG  727

Query  152  ---------TTCAA--AATAATCTTAT--------------------TGGGA----------------------  172
                     |||||  |||  |||..|                    |||||                      
Sbjct  728  CCTCCCGGGTTCAAGCAAT--TCTCCTGCCTCAGCCACCTGAGTAGCTGGGATTACAGCGTGCACCACCACGCC  799

Query  173  ----AAATT---------------GAAA------------ATGTTAG------------CAAACTC--------  195
                .||||               ||.|            |||||.|            |.|||||        
Sbjct  800  AGGCTAATTTTTGTATTCTTAGTAGAGACGGGGTTTTGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTC  873

Query  196  ---------------------------AAG--------------------------------------AAACTT  204
                                       |||                                      ||||.|
Sbjct  874  AGGTGATCCGCCCGCCTCGGCCTCTCAAAGTGCTGCGATTACAGGCGTGAGCCACTGCGCCCGGTAGTAAACGT  947

Query  205  GAATATTTGAATTTAGCTTTAAACAACATTGAA-AAAATAGAAAACTTGGAA---------GGATGTGAAGAGC  268
            |    |||        ||||||        ||| |.|.||..|||| ||.||         |||||||||||||
Sbjct  948  G----TTT--------CTTTAA--------GAATATACTAACAAAC-TGCAAGGTGATGCGGGATGTGAAGAGC  1000

Query  269  TGGCAAAACTTGACCTGACTGTGAATTTCATTGGAGAGCTGAGCAGCATTAAAAACTTGCAGCACAATATCCAT  342
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001  TGGCAAAACTTGACCTGACTGTGAATTTCATTGGAGAGCTGAGCAGCATTAAAAACTTGCAGCACAATATCCAT  1074

Query  343  CTGAAGGAGCTCTTTCTCATGGGGAACCCATGTGCTTCCTTTGACCACTATAGGGAGTTCGTGGTAGCAACTCT  416
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075  CTGAAGGAGCTCTTTCTCATGGGGAACCCATGTGCTTCCTTTGACCACTATAGGGAGTTCGTGGTAGCAACTCT  1148

Query  417  TCCACAATTAAAGTGGTTGGATGGTAAAGAAATAGAGCCTTCAGAAAGGATTAAGGCATTGCAGGACTATTCAG  490
            |||||||||||||                                                             
Sbjct 1149  TCCACAATTAAAG-------------------------------------------------------------  1161

Query  491  TAATTGAACCACAAATCAGAGAGCAGGAAAAAGATCACTGTCTTAAACGAGCCAAACTCAAGGAAGAGGCTCAG  564
                                                                                      
Sbjct 1162  --------------------------------------------------------------------------  1161

Query  565  AGGAAACACCAAGAAGAGGATAAAAATGAAGACAAGAGAAGTAACGCAGGCTTTGATGGACGTTGGTACACAGA  638
                                                                                      
Sbjct 1162  --------------------------------------------------------------------------  1161

Query  639  CATCAATGCTACTCTTTCCTCTTTAGAGAGCAAAGACCACCTACAGGCACCAGACACAGAGGAACACAACACAA  712
                           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162  ---------------TTCCTCTTTAGAGAGCAAAGACCACCTACAGGCACCAGACACAGAGGAACACAACACAA  1220

Query  713  AGAAATTAGACAACAGTGAAGATGACTTGGAATTCTGGAATAAGCCCTGTTTGTTTACTCCTGAATCAAGATTG  786
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221  AGAAATTAGACAACAGTGAAGATGACTTGGAATTCTGGAATAAGCCCTGTTTGTTTACTCCTGAATCAAGATTG  1294

Query  787  GAAACTCTTAGACACATGGAAAAACAACGGAAGAAACAGGAAAAATTAAGTGAAAAAAAGAAGAAAGTGAAACC  860
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1295  GAAACTCTTAGACACATGGAAAAACAACGGAAGAAACAGGAAAAATTAAGTGAAAAAAAGAAGAAAGTGAAACC  1368

Query  861  ACCCAGGACTTTGATCACTGAAGATGGGAAAGCCCTAAATGTGAATGAGCCCAAAATTGACTTCTCTTTGAAAG  934
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1369  ACCCAGGACTTTGATCACTGAAGATGGGAAAGCCCTAAATGTGAATGAGCCCAAAATTGACTTCTCTTTGAAAG  1442

Query  935  ATAACGAAAAGCAGATCATCCTGGACCTTGCTGTCTATAGGTATATGGATACCTCTTTAATCGATGTTGATGTG  1008
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1443  ATAACGAAAAGCAGATCATCCTGGACCTTGCTGTCTATAGGTATATGGATACCTCTTTAATCGATGTTGATGTG  1516

Query 1009  CAACCAACTTACGTGCGAGTAATGATCAAAGGAAAGCCATTTCAGCTTGTCCTTCCTGCAGAAGTGAAACCCGA  1082
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1517  CAACCAACTTACGTGCGAGTAATGATCAAAGGAAAGCCATTTCAGCTTGTCCTTCCTGCAGAAGTGAAACCCGA  1590

Query 1083  TAGTAGTTCTGCTAAAAGATCTCAGACAACGGGTCATTTGGTCATCTGCATGCCCAAGGTAGGAGAAGTAATCA  1156
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1591  TAGTAGTTCTGCTAAAAGATCTCAGACAACGGGTCATTTGGTCATCTGCATGCCCAAGGTAGGAGAAGTAATCA  1664

Query 1157  CAGGTGGTCAGCGAGCATTCAAATCTATGAAAACTACCTCGGACAGGAGCAGAGAACAAACAAATACAAGAAGC  1230
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665  CAGGTGGTCAGCGAGCATTCAAATCTATGAAAACTACCTCGGACAGGAGCAGAGAACAAACAAATACAAGAAGC  1738

Query 1231  AAGCACATGGAGAAACTAGAAGTAGACCCTAGCAAGCACTCATTCCCTGATGTGACTAACATAGTTCAAGAGAA  1304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739  AAGCACATGGAGAAACTAGAAGTAGACCCTAGCAAGCACTCATTCCCTGATGTGACTAACATAGTTCAAGAGAA  1812

Query 1305  AAAACACACACCCAGAAGACGACCTGAACCCAAAATTATACCAAGTGAGGAAGACCCAACCTTTGAAGACAACC  1378
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1813  AAAACACACACCCAGAAGACGACCTGAACCCAAAATTATACCAAGTGAGGAAGACCCAACCTTTGAAGACAACC  1886

Query 1379  CTGAAGTGCCTCCGCTGATT------------------------------------------------------  1398
            ||||||||||||||||||||                                                      
Sbjct 1887  CTGAAGTGCCTCCGCTGATTTGAAACATCTGGCTGCGTTGCCATTGGCTGAGACCCACCAGGTCCAGTTTTGGT  1960

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1961  TGGTGTAGAGACCATATGCATATTATTCCTGGGATAAACACAGAGTTATTTGTCAATATCGCTGCTCCAGTGTT  2034

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2035  TTAACTCTTACTTTGCATAGTAATATCCTTAAGATAGCTTAAAATTAAAATGTATGTCTTAAATGCTATAACTC  2108

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2109  ATCATTTACCTATAATAAAGGGTTGGTATTGAAAATGTTTAGTAAGATCATAGAACTATTGCATAAAACACTGA  2182

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2183  TTATAAATACTGTCTACTTATGCAAAGTATTAATTCATAGATAAAAGGACTGAGTATTAAATTGGTACTTCAGC  2256

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2257  AAAGTGGTCAAGCTTAGAAGTTAAAACTGTAATTTCAGACCCAATTGGAATACTTTAATATGATTTTAAACAGC  2330

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2331  ATTTCCATTTTCCTTCCCATGATGTGTCTGCTTTCTCTGGTGGCATGGTATAATGGCAAGAATATGAGTTTTGA  2404

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2405  AACCAGACACTCTATATTTGGATTCCAGCTCAATCACTTTGTAAAGACCTTCAGCAAGTCCTTTAATTCTCTGA  2478

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2479  GCCTTAGTGGCTTCATGTATAATCTGGGAATAATAACACTTGCCTCACAGGTTTGTCTCAAGATAAACTGCAGA  2552

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2553  AAGCACTTAGTACAGTGTCAGCCATACATTTAGAGCCTCTTCTCTCTCTCCTTCTTCCCTTTCTCCTCTCTCTT  2626

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2627  CTCCTCCCTTTCTCCTGTCTCTCCTCCTCCCTGCTCCTTCTTCCCCTCCCTCCCCAATTACTTTTCTCCCCTTA  2700

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2701  TTCTTTTTCTTCACCTTTTTACTCCCCATCCCACTCCTTCTCCTCTATTTCCTTCTTTACTTTTTTAATATCCT  2774

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2775  ACCTCTTCTTTATCTAGAACATTATGAATTCAATATTTCACATACATTGTAGGACAAATTACTGTTACTCTGAT  2848

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2849  CATGATATAGCAACATTTAAGTCAGTTTCCCCAAATATTCATTCAACAAATACTTATTGAGCAACTATTGAGTG  2922

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2923  CTAGCCCCCTCTCTGTTCATCAGGGATTTAGTAGTAACAAAGCAGACAAATACATACACACAGACTATGTCAGG  2996

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2997  TGGTGTTCAGAGCTGTGAAGGAGAGTCAGAGTGAGGGAATCAAGGGTGATGGGTGCTTTTTCAGACAGGGCCTT  3070

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 3071  TCTCTATTAAACAGGCTTCCAGTGGAAGACTCTGCTAATGTTTAGCAGATAACCAAAATGCATCAGTTAGAAAA  3144

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 3145  AAATATGATGAGAATGAGGGACTGGTTATAGGAATGCAATTGGGCACAAATGTGGGAAGAGCTGGGTAGTGAAG  3218

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 3219  CTCTAGAAGGGAGAGGTAGAGAATTGGAAGAAGAAGCACTGGTACAGGTAGACAATTCAGAACTTGCACAGAAT  3292

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 3293  CTGAGAAGCTGAAGTAGGACTGTGATTGGGAGCTTGTGGAGAGGTCTATGGAAATTATCATGCTGCTGAAATTG  3366

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 3367  TTGCCTCTATTTATCTGCTACCCTTCTGGTCCGTGGCCAAGATCCTGGTGGGTGGGCTTGGAGCCAGCCTTCGT  3440

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 3441  CAGCAGGCCTGCGGTAAGAAAGATGGGATGGACACACAGTGGTGGAGATCAAGGATCAGCTGCAGCAGGCTGGG  3514

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 3515  TCCCTCTGCATCTGTCCATCACTGCGACTGATGGCAATGACTGAGTATAACACCTTTCTTCATGGTCAACTCTA  3588

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 3589  CCCAGGAACCACGTAGGGAAGGAAATTCTGGAAAACAGCTCCCAGCCTTAGCCAACTTGACATATCATAATCCA  3662

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 3663  ACAGAACTCAACCTCTACCAACTTGGAAATCATGTACATTTGTCAGGACTGTATTTAATTTCCACATAGAGAGA  3736

Query 1399  ---------------------------------------------------------------  1398
                                                                           
Sbjct 3737  AAGCAAAATTATACTTTTGACCAAACTAATAGAATTATCCATTAAACAAACAAAACTGTGCCA  3799

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