Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_02816
- Subject:
- NR_135912.2
- Aligned Length:
- 4582
- Identities:
- 1170
- Gaps:
- 3408
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTCATTCGAGGTCCGGGTCCGGCTTGCGGGGTCAGCGAACTGGAGAGGCGCCATGGGCTGGAGTAAGCCCCCCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCACCTTCCGTCCTCGATCGTTCCCCTTGTGGAAGTAGTCCCGGGTCTCGTGGGATCCTCGCCGCCCGCTCCCG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCCTGCGCTGTCGGTTCCCCCGCGCCTGGGCGGACCCTAACCCCACCCGGCCCTCCGCACCGCAGCCCCGGCTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CACCAGGTCCTCTGCAGACTGGCCGGACAGCCTGGCCTTTTCCAGCTCAGGTTCCTAATCTGTAAAATGGGCGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGCCGTGGGAAGGGGAGGAAGAGGCAGAAAGGCACTGGACTCCAGGAAAGGGGTCGGGGAACGTGCAGGGGTTT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGGCGCCAGACACACCACGTTCCGGCCAAGTGGCTCCTTACTGGCTGTGAACGTGGGCCAGTCACTGTCTCCAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCCGCAATCTTCGGACTCATTCCGGAAGGCAGTGTAGCCTAATGGTGGAGGGTTCCGACTCTGGAGCCAGGGTT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GAAGTCCTCCCTCTTCCTGTGACTTTGAGCGAGTGACTTCACCCCTTGGGCCTCAGCTTCTTCATCTCCAAAAT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AATGGCAATCATACTACTGTTTTAGACACAGTAAGTGTTATAAACGTGTTTTTGTTTGTTTGTTTGAGACAAGA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GTTTTGCTCTGTCGCCCAGGCTGGAGTGCAGCGGCGCGATCTCGGCCCACTGCAGCCTCCGCCTCCCGGGTTCA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AGCAATTCTCCTGCCTCAGCCACCTGAGTAGCTGGGATTACAGCGTGCACCACCACGCCAGGCTAATTTTTGTA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TTCTTAGTAGAGACGGGGTTTTGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCGC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CTCGGCCTCTCAAAGTGCTGCGATTACAGGCGTGAGCCACTGCGCCCGGTAGTAAACGTGTTTCTTTAAGAATA 962
Query 1 ---------------ATGGGCTG-GATCACAGAAGATCTTATTAGACGGAATGCTGAACACAACGACTGTGTCA 58
|.|.|.|| |.||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TACTAACAAACTGCAAGGTGATGCGGTCACAGAAGATCTTATTAGACGGAATGCTGAACACAACGACTGTGTCA 1036
Query 59 TTTTTTCCCTGGAGGAACTCTCGTTGCATCAGCAAGAAATAGAAAGACTAGAACACATTGATAAATGGTGCCGG 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TTTTTTCCCTGGAGGAACTCTCGTTGCATCAGCAAGAAATAGAAAGACTAGAACACATTGATAAATGGTGCCGG 1110
Query 133 GATTTAAAAATTCTCTATCTTCAAAATAATCTTATTGGGAAAATTGAAAATGTTAGCAAACTCAAGAAACTTGA 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GATTTAAAAATTCTCTATCTTCAAAATAATCTTATTGGGAAAATTGAAAATGTTAGCAAACTCAAGAAACTTGA 1184
Query 207 ATATTTGAATTTAGCTTTAAACAACATTGAAAAAATAGAAAACTTGGA-------------------------- 254
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 ATATTTGAATTTAGCTTTAAACAACATTGAAAAAATAGAAAACTTGGAAGATGTCATCTATTGACTTCCTGATG 1258
Query 255 -------------------------------------------------------------------------- 254
Sbjct 1259 TGGACGATGCAGATTTTGTTCTCTCACACCATCTGCAAGGTTCTCAATTTTCTCCTACCCACCCTCCGTGTATT 1332
Query 255 -------------------------------------------------------------------------- 254
Sbjct 1333 TTCATATGACATTGACAGGATATCATAATGAAATATGGCATACGGACCCATTTACGGGGACTGGTCTTTTGAAT 1406
Query 255 -------------------------------------------------------------------------- 254
Sbjct 1407 TAACTGTGTTGGGAGAGGATATTACACTTGCTCCCCAACTCTCCCACATCTAATCTCTGGCCTTTCTTATCCTA 1480
Query 255 -----------------------------------------------------------------AGGATGTGA 263
|||||||||
Sbjct 1481 CCTGCCTCCTCCTGCCTTCTTCCAAGCTGGTCTCTCCATCTCCACCTGTGTCATGAATTCCAGGCAGGATGTGA 1554
Query 264 AGAGCTGGCAAAACTTGACCTGACTGTGAATTTCATTGGAGAGCTGAGCAGCATTAAAAACTTGCAGCACAATA 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 AGAGCTGGCAAAACTTGACCTGACTGTGAATTTCATTGGAGAGCTGAGCAGCATTAAAAACTTGCAGCACAATA 1628
Query 338 TCCATCTGAAGGAGCTCTTTCTCATGGGGAACCCATGTGCTTCCTTTGACCACTATAGGGAGTTCGTGGTAGCA 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TCCATCTGAAGGAGCTCTTTCTCATGGGGAACCCATGTGCTTCCTTTGACCACTATAGGGAGTTCGTGGTAGCA 1702
Query 412 ACTCTTCCACAATTAAAGTGGTTGGATGGTAAAGAAATAGAGCCTTCAGAAAGGATTAAGGCATTGCAGGACTA 485
||||||||||||||||||
Sbjct 1703 ACTCTTCCACAATTAAAG-------------------------------------------------------- 1720
Query 486 TTCAGTAATTGAACCACAAATCAGAGAGCAGGAAAAAGATCACTGTCTTAAACGAGCCAAACTCAAGGAAGAGG 559
Sbjct 1721 -------------------------------------------------------------------------- 1720
Query 560 CTCAGAGGAAACACCAAGAAGAGGATAAAAATGAAGACAAGAGAAGTAACGCAGGCTTTGATGGACGTTGGTAC 633
Sbjct 1721 -------------------------------------------------------------------------- 1720
Query 634 ACAGACATCAATGCTACTCTTTCCTCTTTAGAGAGCAAAGACCACCTACAGGCACCAGACACAGAGGAACACAA 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1721 --------------------TTCCTCTTTAGAGAGCAAAGACCACCTACAGGCACCAGACACAGAGGAACACAA 1774
Query 708 CACAAAGAAATTAGACAACAGTGAAGATGACTTGGAATTCTGGAATAAGCCCTGTTTGTTTACTCCTGAATCAA 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1775 CACAAAGAAATTAGACAACAGTGAAGATGACTTGGAATTCTGGAATAAGCCCTGTTTGTTTACTCCTGAATCAA 1848
Query 782 GATTGGAAACTCTTAGACACATGGAAAAACAACGGAAGAAACAGGAAAAATTAAGTGAAAAAAAGAAGAAAGTG 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1849 GATTGGAAACTCTTAGACACATGGAAAAACAACGGAAGAAACAGGAAAAATTAAGTGAAAAAAAGAAGAAAGTG 1922
Query 856 AAACCACCCAGGACTTTGATCACTGAAGATGGGAAAGCCCTAAATGTGAATGAGCCCAAAATTGACTTCTCTTT 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1923 AAACCACCCAGGACTTTGATCACTGAAGATGGGAAAGCCCTAAATGTGAATGAGCCCAAAATTGACTTCTCTTT 1996
Query 930 GAAAGATAACGAAAAGCAGATCATCCTGGACCTTGCTGTCTATAGGTATATGGATACCTCTTTAATCGATGTTG 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1997 GAAAGATAACGAAAAGCAGATCATCCTGGACCTTGCTGTCTATAGGTATATGGATACCTCTTTAATCGATGTTG 2070
Query 1004 ATGTGCAACCAACTTACGTGCGAGTAATGATCAAAGGAAAGCCATTTCAGCTTGTCCTTCCTGCAGAAGTGAAA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2071 ATGTGCAACCAACTTACGTGCGAGTAATGATCAAAGGAAAGCCATTTCAGCTTGTCCTTCCTGCAGAAGTGAAA 2144
Query 1078 CCCGATAGTAGTTCTGCTAAAAGATCTCAGACAACGGGTCATTTGGTCATCTGCATGCCCAAGGTAGGAGAAGT 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2145 CCCGATAGTAGTTCTGCTAAAAGATCTCAGACAACGGGTCATTTGGTCATCTGCATGCCCAAGGTAGGAGAAGT 2218
Query 1152 AATCACAGGTGGTCAGCGAGCATTCAAATCTATGAAAACTACCTCGGACAGGAGCAGAGAACAAACAAATACAA 1225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2219 AATCACAGGTGGTCAGCGAGCATTCAAATCTATGAAAACTACCTCGGACAGGAGCAGAGAACAAACAAATACAA 2292
Query 1226 GAAGCAAGCACATGGAGAAACTAGAAGTAGACCCTAGCAAGCACTCATTCCCTGATGTGACTAACATAGTTCAA 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2293 GAAGCAAGCACATGGAGAAACTAGAAGTAGACCCTAGCAAGCACTCATTCCCTGATGTGACTAACATAGTTCAA 2366
Query 1300 GAGAAAAAACACACACCCAGAAGACGACCTGAACCCAAAATTATACCAAGTGAGGAAGACCCAACCTTTGAAGA 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2367 GAGAAAAAACACACACCCAGAAGACGACCTGAACCCAAAATTATACCAAGTGAGGAAGACCCAACCTTTGAAGA 2440
Query 1374 CAACCCTGAAGTGCCTCCGCTGATT------------------------------------------------- 1398
|||||||||||||||||||||||||
Sbjct 2441 CAACCCTGAAGTGCCTCCGCTGATTTGAAACATCTGGCTGCGTTGCCATTGGCTGAGACCCACCAGGTCCAGTT 2514
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2515 TTGGTTGGTGTAGAGACCATATGCATATTATTCCTGGGATAAACACAGAGTTATTTGTCAATATCGCTGCTCCA 2588
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2589 GTGTTTTAACTCTTACTTTGCATAGTAATATCCTTAAGATAGCTTAAAATTAAAATGTATGTCTTAAATGCTAT 2662
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2663 AACTCATCATTTACCTATAATAAAGGGTTGGTATTGAAAATGTTTAGTAAGATCATAGAACTATTGCATAAAAC 2736
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2737 ACTGATTATAAATACTGTCTACTTATGCAAAGTATTAATTCATAGATAAAAGGACTGAGTATTAAATTGGTACT 2810
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2811 TCAGCAAAGTGGTCAAGCTTAGAAGTTAAAACTGTAATTTCAGACCCAATTGGAATACTTTAATATGATTTTAA 2884
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2885 ACAGCATTTCCATTTTCCTTCCCATGATGTGTCTGCTTTCTCTGGTGGCATGGTATAATGGCAAGAATATGAGT 2958
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2959 TTTGAAACCAGACACTCTATATTTGGATTCCAGCTCAATCACTTTGTAAAGACCTTCAGCAAGTCCTTTAATTC 3032
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3033 TCTGAGCCTTAGTGGCTTCATGTATAATCTGGGAATAATAACACTTGCCTCACAGGTTTGTCTCAAGATAAACT 3106
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3107 GCAGAAAGCACTTAGTACAGTGTCAGCCATACATTTAGAGCCTCTTCTCTCTCTCCTTCTTCCCTTTCTCCTCT 3180
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3181 CTCTTCTCCTCCCTTTCTCCTGTCTCTCCTCCTCCCTGCTCCTTCTTCCCCTCCCTCCCCAATTACTTTTCTCC 3254
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3255 CCTTATTCTTTTTCTTCACCTTTTTACTCCCCATCCCACTCCTTCTCCTCTATTTCCTTCTTTACTTTTTTAAT 3328
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3329 ATCCTACCTCTTCTTTATCTAGAACATTATGAATTCAATATTTCACATACATTGTAGGACAAATTACTGTTACT 3402
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3403 CTGATCATGATATAGCAACATTTAAGTCAGTTTCCCCAAATATTCATTCAACAAATACTTATTGAGCAACTATT 3476
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3477 GAGTGCTAGCCCCCTCTCTGTTCATCAGGGATTTAGTAGTAACAAAGCAGACAAATACATACACACAGACTATG 3550
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3551 TCAGGTGGTGTTCAGAGCTGTGAAGGAGAGTCAGAGTGAGGGAATCAAGGGTGATGGGTGCTTTTTCAGACAGG 3624
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3625 GCCTTTCTCTATTAAACAGGCTTCCAGTGGAAGACTCTGCTAATGTTTAGCAGATAACCAAAATGCATCAGTTA 3698
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3699 GAAAAAAATATGATGAGAATGAGGGACTGGTTATAGGAATGCAATTGGGCACAAATGTGGGAAGAGCTGGGTAG 3772
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3773 TGAAGCTCTAGAAGGGAGAGGTAGAGAATTGGAAGAAGAAGCACTGGTACAGGTAGACAATTCAGAACTTGCAC 3846
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3847 AGAATCTGAGAAGCTGAAGTAGGACTGTGATTGGGAGCTTGTGGAGAGGTCTATGGAAATTATCATGCTGCTGA 3920
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3921 AATTGTTGCCTCTATTTATCTGCTACCCTTCTGGTCCGTGGCCAAGATCCTGGTGGGTGGGCTTGGAGCCAGCC 3994
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3995 TTCGTCAGCAGGCCTGCGGTAAGAAAGATGGGATGGACACACAGTGGTGGAGATCAAGGATCAGCTGCAGCAGG 4068
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 4069 CTGGGTCCCTCTGCATCTGTCCATCACTGCGACTGATGGCAATGACTGAGTATAACACCTTTCTTCATGGTCAA 4142
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 4143 CTCTACCCAGGAACCACGTAGGGAAGGAAATTCTGGAAAACAGCTCCCAGCCTTAGCCAACTTGACATATCATA 4216
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 4217 ATCCAACAGAACTCAACCTCTACCAACTTGGAAATCATGTACATTTGTCAGGACTGTATTTAATTTCCACATAG 4290
Query 1399 -------------------------------------------------------------------- 1398
Sbjct 4291 AGAGAAAGCAAAATTATACTTTTGACCAAACTAATAGAATTATCCATTAAACAAACAAAACTGTGCCA 4358
