Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_03390
- Subject:
- NR_045672.1
- Aligned Length:
- 5508
- Identities:
- 523
- Gaps:
- 4933
Alignment
Query 1 ATGACAGACTCGGCGACAGCTAACGGGGACGACAGGGACCCCGAGATCGAGCTCTTTGTGAAGGCTGGAATCGA 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 TGGAGAAAGCATCGGCAACTGTCCTTTCTCTCAGCGCCTCTTCATGATC-----CTCT------GGCTG--AAA 135
||| .|||.||.|.||| |||||.| .||| .|||| |||
Sbjct 1 ---------------CAA-AGTCATTGCCCTC----------CATGAACTAACAATCTACAGGGAGCTGTAAAA 48
Query 136 GGAGT-CGTGTTCAATGTCACCACTGTGGATCTGAAAAGAAAGCCAGCTGAC------CTGCACAACCTAGCCC 202
..||| |.|||.|||| || ||....|||.|.| |||..||||| || |||||||||.|
Sbjct 49 CAAGTACATGTGCAAT-TC-CCGGCCTGGGTTT-----GAATCCCAGC--ACTTCTAGCTGCACAACTT----- 108
Query 203 CCGGCACGCACCC-----GC----CCTTCCTGACCTTC---------------AACGGGGACGTGA-AGACAG- 250
.|||| || .|||.||||.|.|| ||...||||.|.| |..|||
Sbjct 109 --------TACCCAAGAGGCTTATTCTTTCTGAGCCTCTGGCTCTGCATCTGTAAAATGGACTTTACATTCAGT 174
Query 251 --------ACGTCAATAAGAT-------------CGAGGAGTTCCTGG-----------AGGAGAC------CT 286
..|.|||||||.| .|.|||| |||| |||.||| ||
Sbjct 175 TTCTTTATCTGGCAATAAGGTATTCTGCAGTGTGTGGGGAG---CTGGCAGTGTGATGAAGGGGACAGGATTCT 245
Query 287 TGACCCCTGAAAAG-TACCCCAAACTGGCTGCAAAACACCGGGA----ATCCAACACAGCGGGCA------TCG 349
.|| || || |||.|||..||| ||.||.|...|| ||||| |.|||| |.|
Sbjct 246 AGA----TG---AGCTACTCCACTCTG-----AAGACCCTATGACTGTATCCA------CTGGCAAGAAGTTTG 301
Query 350 ACAT-------CTTTTCCAAGT-TTTCTGCCTACATCAAAAATACCAAGCAGCAGAACAATGCTGCTCTTGAAA 415
| || ||||| |.| |||| ||.||| ||||||||||
Sbjct 302 A-ATAAAGGCCCTTTT---ACTCTTTC--------------ATGCCA-----------------GCTCTTGAAA 340
Query 416 GAGGCCTAACCAAGGCTCTAAAGAAATTGGATGACTACCTGAACACCCCTCTACCAGAGGAGATTGACGCCAAC 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 GAGGCCTAACCAAGGCTCTAAAGAAATTGGATGACTACCTGAACACCCCTCTACCAGAGGAGATTGACGCCAAC 414
Query 490 ACTTGTGGGGAAGACAAGGGGTCCCGGCGCAAGTTCCTGGATGGGGATGAGCTGACCCTGGCTGACTGCAATCT 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 ACTTGTGGGGAAGACAAGGGGTCCCGGCGCAAGTTCCTGGATGGGGATGAGCTGACCCTGGCTGACTGCAATCT 488
Query 564 GTTGCCCAAGCTCCATGTGGTCAAGATTGTGGCCAAGAAATACCGCAACTATGATATCCCGGCTGAGATGACAG 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 GTTGCCCAAGCTCCATGTGGTCAAGATTGTGGCCAAGAAATACCGCAACTATGATATCCCGGCTGAGATGACAG 562
Query 638 GCCTGTGGCGGTACCTCAAGAACGCCTATGCCCGTGATGAGTTCACCAACACCTGTGCAGCTGACAGTGAGATC 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 GCCTGTGGCGGTACCTCAAGAACGCCTATGCCCGTGATGAGTTCACCAACACCTGTGCAGCTGACAGTGAGATC 636
Query 712 GAGTTGGCCTACGCTGATGTCGCCAAACGCCTCAGCCGATCC-------------------------------- 753
||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 GAGTTGGCCTACGCTGATGTCGCCAAACGCCTCAGCCGATCCTGAGCACAGCCATTTTGCCCCATCCCCGCTGC 710
Query 754 -------------------------------------------------------------------------- 753
Sbjct 711 AGAAGGACTCAACCACTCCCCTAAGACTCCAGCTTCATAGACTCCTCTGTATCACTGCCTTGAGGCGCACTTTT 784
Query 754 -------------------------------------------------------------------------- 753
Sbjct 785 TATAATCAAGCCTCATCTTGCTGGTATCATGGGAACTCCAGCCTGCTATCTTTCATGAAGGTCAGCACCATCCC 858
Query 754 -------------------------------------------------------------------------- 753
Sbjct 859 TGGCCTCCTCACATAGGAATCTAGCAGAAATGATAGACACAGTCCACCTTTCGGCCGGCCAGCCTGATCTGGGC 932
Query 754 -------------------------------------------------------------------------- 753
Sbjct 933 TCAGCATGTTTGGGGTCAGTCAGTGTTGGAGAGCCCACATATGGGATTGCCACTAGCTTCTTCTGCCAATATCA 1006
Query 754 -------------------------------------------------------------------------- 753
Sbjct 1007 AAATACCTTCTCAGATGCTTTAGAAACATGCAACACCAACTCCTTTTCTACCCTCCTCTCCGTCCATACCTACA 1080
Query 754 -------------------------------------------------------------------------- 753
Sbjct 1081 AGGCCAAGGACAAACGCCATCTTCATCCTTCTTAGAAAGAGATCTATTACCCCATTAGGGGAGACAGAGAGAGT 1154
Query 754 -------------------------------------------------------------------------- 753
Sbjct 1155 GAATGGAGGAGTACCGAGCTGGCTATGGACTTGGGTGTCTGGCAAACACAGCTTCAGTCTCACTACTTCTGACA 1228
Query 754 -------------------------------------------------------------------------- 753
Sbjct 1229 CTCTGGTTATTGGGCACTAAGGGCCAGACTGGAAAGTCACTTGAGACACATTCTCAGTTTGTTGCAGTGCCAGG 1302
Query 754 -------------------------------------------------------------------------- 753
Sbjct 1303 AATGCTGCGCTGCTGCTGCTGCGCACCTGGCCCATGCTGTCCCTGGCTTCCATGCCGTCCAGGCCCTGCCAGAA 1376
Query 754 -------------------------------------------------------------------------- 753
Sbjct 1377 AAGGAAATTGGCATGCAATTCTAAACTGCAGTGACTGGGATGGGAGGGGAGGGGAGCAGTGTTGATGCCAAAAT 1450
Query 754 -------------------------------------------------------------------------- 753
Sbjct 1451 ACCCACGGGGTCTACCAGCCATGGGGTTTGCTTGCTTAGGAGTAGTTGTTTCAGAGGTGATTACAGGCCTGGGT 1524
Query 754 -------------------------------------------------------------------------- 753
Sbjct 1525 TTGACTGTGCTTACCAATGAGTGGTTTTTGAGCTATGAGAAAGTGGATGGGAGTGGGAGGAGGAGAGATGGGTG 1598
Query 754 -------------------------------------------------------------------------- 753
Sbjct 1599 AAGACAAAAGAGTTCTTTATGAGCCTCGATGTTCCCTGGTAAACTTTTAAAAAGGCCTTCTCTCATGATCTAAG 1672
Query 754 -------------------------------------------------------------------------- 753
Sbjct 1673 TCTTGGACTGGTGGCATCATGTAACTGCTAACCTTACAGTAAAAACCCAAGAATGGGTCAAAAATGTCTTCCCA 1746
Query 754 -------------------------------------------------------------------------- 753
Sbjct 1747 GTTTCTCCAAGCTGCTTCTGGAATGCAGGTCTGTCGGCTGGGTGCTCTCCAGCAGCTGCTCCTGCCTGATTCAA 1820
Query 754 -------------------------------------------------------------------------- 753
Sbjct 1821 CTGTAGCCTGTAATGGGTAAAAGCCACATTTAGGAGGTGGTCTGATCATAGAACACCTTAGGAAGAAAGTCCAT 1894
Query 754 -------------------------------------------------------------------------- 753
Sbjct 1895 GAGACTTTCTGACTAGGAAACCATGTGGTTTGAACTTGAAGAAAAATGTAGACCCATCTGGGTTAATTTTCCTA 1968
Query 754 -------------------------------------------------------------------------- 753
Sbjct 1969 CAATCTGACTCAACTGCCAGGTGAAAAAAAAAAGGAAAAATTTTTAAGCTAATATTTCACTCTTTTGTCATTCT 2042
Query 754 -------------------------------------------------------------------------- 753
Sbjct 2043 CCTTAAGTTTCATCTCCTAAAAAGCTTACCCAGCCTGAGCTTGGGGACCTGTGCAGAGGAAACTAAGAAAAATG 2116
Query 754 -------------------------------------------------------------------------- 753
Sbjct 2117 CACTCATCAACTCCTTCTCCCAGTGAACGCCCGGTGAGAAAATCCATTTGCCACAGGCCCTTACCTTCAACAAT 2190
Query 754 -------------------------------------------------------------------------- 753
Sbjct 2191 CCCCCTTCTATAGTGTTCGCTGGTAAAGGGTGAGGCTCCCAAGTGCTGGAAAGCCCCTGGACTTGGCTCATTTC 2264
Query 754 -------------------------------------------------------------------------- 753
Sbjct 2265 TCAGCAAGGGCAGGATAGCACGGGTCCTTTCCATAGAAATATCAACAAATTCTAACCCAAGCAATCCCTGGACC 2338
Query 754 -------------------------------------------------------------------------- 753
Sbjct 2339 TACCTGCCTCCAGGGATCTCTGAAGAAAAAAAGTAACCCATTGATCAAATCAGAGGAGAGGAAGCAGGAGGTCT 2412
Query 754 -------------------------------------------------------------------------- 753
Sbjct 2413 CCTAGAGCCCATTGAGGAAGAGGAACTTTCTCAGTAGGACACTTTATAAGCCTGAGAAAGCTTTGAAAAGGCGG 2486
Query 754 -------------------------------------------------------------------------- 753
Sbjct 2487 AATGAGTTGATTCATTTCCACCTCAAAAGGAACCTTTCCAGGTCCCCCTGGAAATTGTGCCCTGGAGATGTTTA 2560
Query 754 -------------------------------------------------------------------------- 753
Sbjct 2561 ACAAGGAGAACTGGTGAGGAAAGAGTCCTTTTTTACTGTAGGGAAAAGCCCCAAACTGGCCTCCTGGGGGATGA 2634
Query 754 -------------------------------------------------------------------------- 753
Sbjct 2635 GGGCTGAAATGATCCCGAAGGCCTTTTAATTAGTGTGAAATCCTGCTGTACTCAGAAATCCTTCCCCGAATTTA 2708
Query 754 -------------------------------------------------------------------------- 753
Sbjct 2709 CAGCACAGGCAGGATGACCTAAGAGGCAGTTTACTTCCCTGAGACCCACAGTTGGGCTGTTCTGGAAACACATC 2782
Query 754 -------------------------------------------------------------------------- 753
Sbjct 2783 TGTGAATCATAGCCAATTGCCACAGAGAAAACAGAACCAAGCCTCCGGTGAGGCCACTCCACCCCAGAGAAGTC 2856
Query 754 -------------------------------------------------------------------------- 753
Sbjct 2857 TGCAGAATTCCAAGGACTCGGATTGGATGTTCAGAATTCAGCAACTGGAAAGTCCTTAAAAACAAACAGGCCAA 2930
Query 754 -------------------------------------------------------------------------- 753
Sbjct 2931 ACCAAATCAATATTGCTGTTTCTAGATGTCCCTTCTGTGGTTGAGCTAGTTTTACAGAGATAAATATATTAAGA 3004
Query 754 -------------------------------------------------------------------------- 753
Sbjct 3005 CAAGGAGGTGGGGGTGTTATATGATCAATGATAGCCATTTGAAAGAGAGGGAGGAGTACAGAAGGAAGGCACTT 3078
Query 754 -------------------------------------------------------------------------- 753
Sbjct 3079 CTGGGTACTTAATTCAGAAATTTCTTTATATTTCAGCACTGGATTATCATATAATGCAAGTGACTATGGACTAA 3152
Query 754 -------------------------------------------------------------------------- 753
Sbjct 3153 GAGTTAGTTATGGTGTCTTATGACTAGATTTATTATGGTATATTAAAGTAACAATAATATTAATATTACCTTCC 3226
Query 754 -------------------------------------------------------------------------- 753
Sbjct 3227 TTTTTTTTTTTGTTTCAAAAGAGATCTTTCTCCAGATGCTTCAGCCTGTCTGGCCTTCTTATCATATGTGCAGC 3300
Query 754 -------------------------------------------------------------------------- 753
Sbjct 3301 ACATCATGTCTCAGCAACAGTGTGGTGAGGTCCTTAGGTGTCCCAAGAACAACTCAGGGAGCACGGGAGGGTCT 3374
Query 754 -------------------------------------------------------------------------- 753
Sbjct 3375 GCAGTTGGGACCCCACAACTATACAGCTATAGGGTAGGAGGCTTCCTTTTCATTGGTCCTGAATGAATACAAAT 3448
Query 754 -------------------------------------------------------------------------- 753
Sbjct 3449 CGCTCAGAAAGCATTTTGGTGGCACAGAAAGGGGATGTATTTGTGTTGAGATCTTATTTTATTTTGTATTTATT 3522
Query 754 -------------------------------------------------------------------------- 753
Sbjct 3523 TATCTTCTTTGACTTGCACAGCACTATTGGGGGTGGGGGAAGCAGGGTAGTGGGAGACGAAGGCAGAAGCAAGA 3596
Query 754 -------------------------------------------------------------------------- 753
Sbjct 3597 GTCAAACTCAGAATGACTGAGTTGAATTCACTGTCTAGTCAGCAATGCCTGCTTCTGAGTTTGGCCCAGAGAGA 3670
Query 754 -------------------------------------------------------------------------- 753
Sbjct 3671 AGGTATTGAGTAAGATTTTAATAACTGTAAAAAGTAAGCTGGATAAGTAAAATCATGATGGATCCAAAGCACAG 3744
Query 754 -------------------------------------------------------------------------- 753
Sbjct 3745 TTTCTTCATCTCCTGATAAAGAAAGTCAAATGCTTGATAAATTCAGAGTCACAGATGTGAGCATAGCTATATTC 3818
Query 754 -------------------------------------------------------------------------- 753
Sbjct 3819 TTTTAAACGAGAGGTAGAGTGACCTAGCACTAAGCAAATGAGCTGAAATGTCGGAAACAGAGTCCATCAGCTTA 3892
Query 754 -------------------------------------------------------------------------- 753
Sbjct 3893 TTTGGCCACACGATCCCAAACTAGTTTTATCTTGGGAAATGGCCCTGTCCTCAGCATTCCCTTCTTGTGCTGGT 3966
Query 754 -------------------------------------------------------------------------- 753
Sbjct 3967 GGGGCCAGTGAAGTCTTGATCTTATCAGAAAAAGGCCACACCAAGTGCGAGTTTTCCCAGGCTGACTTTCCAGG 4040
Query 754 -------------------------------------------------------------------------- 753
Sbjct 4041 CCCTTATCAAATGAAACAACAGAAGCTCTTCACAGTTCTGTGCCCCATGGCCACTCCACAGACAGACAATACCA 4114
Query 754 -------------------------------------------------------------------------- 753
Sbjct 4115 AGCATCTTAGAACTGTCATAAGATAGGTCATGCCTGAAATAGATCTTGACCATATGAGAGTCCCAGAAATCAGC 4188
Query 754 -------------------------------------------------------------------------- 753
Sbjct 4189 AAGGCCTGGACAAATAGAACTAAGAGAGAGGCAGAGGCAGGAAGCTGCGGGTCTATCTTGTAAAGAGTTTAGCA 4262
Query 754 -------------------------------------------------------------------------- 753
Sbjct 4263 TCACTGTGAGAGTGTGTGTCTAAAATTAAATTAAACTAGAAGCAGCAGGTGAGTATTTGGTAAGTACTTCTGTG 4336
Query 754 -------------------------------------------------------------------------- 753
Sbjct 4337 ACTCGCCTCAATTCCCACTGGCCAGGGGCCATCTCAACTGCACGGTGAATCAAGATGCTGGTGTCATCCTCCTT 4410
Query 754 -------------------------------------------------------------------------- 753
Sbjct 4411 GGAAAAAGGAAATGTTAACTCATGGTTAAAACTAAGTACAATGATTCCCAAGGGATCACTTTCTTATTTTTTTA 4484
Query 754 -------------------------------------------------------------------------- 753
Sbjct 4485 AATGACATTAAGGAGAATCTTAAGAAAGCATCAGAGAAAGACATGTGCATGTGAAGCACCCTGATTCTGATGTT 4558
Query 754 -------------------------------------------------------------------------- 753
Sbjct 4559 AGGAAAACTTAAGCGAACAGGACCTGCTGCACACAGCCCCATTGTCTTCTATCCATTTCTCTTTATCATTCAAA 4632
Query 754 -------------------------------------------------------------------------- 753
Sbjct 4633 TCAAGCAACATGTGCCCTCCTCATCAACACACATTCTTCCCCTTTGTCAGTATGCATCTCCCAGCTTAGTGTCA 4706
Query 754 -------------------------------------------------------------------------- 753
Sbjct 4707 GGATACTTTCGATTCATAATTATGTATGATCCAAAGTGTGCATAATTTCATTTAACGTTAAAGAAATAGATCCA 4780
Query 754 -------------------------------------------------------------------------- 753
Sbjct 4781 ATTCCTTTCTTGCAACCAAAAATAAATAAAATACGTTGCCTCAATATAAGGTTTGGGCTATTCTGTGTTTCTAT 4854
Query 754 -------------------------------------------------------------------------- 753
Sbjct 4855 AGAAGCAATCTGTTTTTGGTAAAATGTACTTTTAAGGATCCAGTCATCTGAAGTATTTTATGTAGAGTTAGAGA 4928
Query 754 -------------------------------------------------------------------------- 753
Sbjct 4929 TTTCACAATATTGACTATACATATATTTAAAATATAAATTATCCAGCTGATGTTTGAATTTGTCTTACTTTCCT 5002
Query 754 -------------------------------------------------------------------------- 753
Sbjct 5003 GGCCACCTCGTTGTCCTATTTTATAAGCTGGGGAGTTAACTAGCTTAACAAAAGATGCTTAGCTTTTGTAAAAG 5076
Query 754 -------------------------------------------------------------------------- 753
Sbjct 5077 AACAAGTGTTTCATTTTACAAAGACACTCCAAATGATAGTTACTTGATTTTCTCGAGACCTTTAACTATGGTGA 5150
Query 754 -------------------------------------------------------------------------- 753
Sbjct 5151 TGAATAACAGGACTTGCTTTCAAGCCTTAATAAATGTAAAATGCCTTTTAATGAAGATACAGCTGAGTGTTTTC 5224
Query 754 -------------------------------------------------------------------------- 753
Sbjct 5225 CTCATGAATCTGAACCAATTACCAATTTGTGTTCCAGTCTTGATTGGTATTGACTGATTCAAATAAAGTTGGTT 5298
Query 754 -------------------------------- 753
Sbjct 5299 TATTTTCAAATATTACAAAAAAAAAAAAAAAA 5330
