Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_03431
Subject:
XM_006717905.3
Aligned Length:
2856
Identities:
2505
Gaps:
351

Alignment

Query    1  ATGAGTGGAGGATCTCAAGTCCACATTTTTTGGGGTGCTCCAATTGCTCCACTGAAAATCACAGTATCAGAAGA  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGAGTGGAGGATCTCAAGTCCACATTTTTTGGGGTGCTCCAATTGCTCCACTGAAAATCACAGTATCAGAAGA  74

Query   75  CACAGCTTCTTTAATGTCTGTTGCTGACCCCTGGAAAAAAATTCAGCTTTTATACAGTCAACATTCTTTATATC  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CACAGCTTCTTTAATGTCTGTTGCTGACCCCTGGAAAAAAATTCAGCTTTTATACAGTCAACATTCTTTATATC  148

Query  149  TGAAGGATGAAAAACAGCACAAAAATCTTGAAAACTATAAAGTCCCAGAATCTATTGGTTCTCCAGATCTTAGT  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  TGAAGGATGAAAAACAGCACAAAAATCTTGAAAACTATAAAGTCCCAGAATCTATTGGTTCTCCAGATCTTAGT  222

Query  223  GGTCATTTCTTAGCAAACTGTATGAATAGACATGTTCATGTGAAAGATGACTTTGTACGTTCTGTTTCTGAAAC  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GGTCATTTCTTAGCAAACTGTATGAATAGACATGTTCATGTGAAAGATGACTTTGTACGTTCTGTTTCTGAAAC  296

Query  297  ACAGAATATAGAATCCCAGAAGATTCACTCCTCTAGACTGAGTGATATAACTAGCTCTAATATGCAAATATGTG  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  ACAGAATATAGAATCCCAGAAGATTCACTCCTCTAGACTGAGTGATATAACTAGCTCTAATATGCAAATATGTG  370

Query  371  GATTTAAAAGCACAGTTCCGCATTTCACCGAAGAAGAAAAGTATCAAAAGCTTCTCAGTGAAAATAAAATTAGA  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GATTTAAAAGCACAGTTCCGCATTTCACCGAAGAAGAAAAGTATCAAAAGCTTCTCAGTGAAAATAAAATTAGA  444

Query  445  GATGAACAGCCTAAACATCAGCCAGATATATGTGGTAAGAACTTTAACACAAATTTGTTTCAGTTGGGCCATAA  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GATGAACAGCCTAAACATCAGCCAGATATATGTGGTAAGAACTTTAACACAAATTTGTTTCAGTTGGGCCATAA  518

Query  519  ATGTGCAGCTGTGTTGGATTTGGTTTGTAGTACTGAAAAAATTAATATAGGGCCTGAAGTGGTACAAAGAGAGT  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  ATGTGCAGCTGTGTTGGATTTGGTTTGTAGTACTGAAAAAATTAATATAGGGCCTGAAGTGGTACAAAGAGAGT  592

Query  593  GTGTGCCAACAGAATATCATGAAATACAAAACCAGTGTTTGGGATTATTTTCCTCGAACGCAGTAGATAAGTCA  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GTGTGCCAACAGAATATCATGAAATACAAAACCAGTGTTTGGGATTATTTTCCTCGAACGCAGTAGATAAGTCA  666

Query  667  AGGTCTGAAGCAGCAGTTAGGAAGGTCTCAGACCTTAAAATATCAACTGATACAGAATTTCTCAGTATAATTAC  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  AGGTCTGAAGCAGCAGTTAGGAAGGTCTCAGACCTTAAAATATCAACTGATACAGAATTTCTCAGTATAATTAC  740

Query  741  CTCCAGCCAGGTTGCTTTTTTAGCTCAAAAGAAAGATAAAAGGCGGAGTCCTGTAAATAAAGGGAATGTAAACA  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CTCCAGCCAGGTTGCTTTTTTAGCTCAAAAGAAAGATAAAAGGCGGAGTCCTGTAAATAAAGGGAATGTAAACA  814

Query  815  TGGAGACTGAACCAAAGGCAAGTTACGGGGAGATAAGAATACCTGAAGAGAATTCGATTCAGCTTGATGGTTTT  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TGGAGACTGAACCAAAGGCAAGTTACGGGGAGATAAGAATACCTGAAGAGAATTCGATTCAGCTTGATGGTTTT  888

Query  889  ACAGAAGCATATGAAAGTGGACAAAACCAAGCATATTCCCTTGAACTTTTTAGTCCTGTTTGTCCTAAAACAGA  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  ACAGAAGCATATGAAAGTGGACAAAACCAAGCATATTCCCTTGAACTTTTTAGTCCTGTTTGTCCTAAAACAGA  962

Query  963  AAATAGCCGCATTCACATAAACTCTGATAAAGGTCTTGAAGAACATACAGGATCTCAAGAACTTTTCAGTTCTG  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  AAATAGCCGCATTCACATAAACTCTGATAAAGGTCTTGAAGAACATACAGGATCTCAAGAACTTTTCAGTTCTG  1036

Query 1037  AAGATGAACTGCCACCAAATGAGATACGTATTGAGTTGTGTAGCTCAGGAATACTGTGTTCCCAACTAAATACC  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  AAGATGAACTGCCACCAAATGAGATACGTATTGAGTTGTGTAGCTCAGGAATACTGTGTTCCCAACTAAATACC  1110

Query 1111  TTCCACAAAAGTGCTATTAAAAGAAGCTGTACCTCTGAAGATAAAGTGGGCCAGTCTGAAGCTCTATCTAGAGT  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  TTCCACAAAAGTGCTATTAAAAGAAGCTGTACCTCTGAAGATAAAGTGGGCCAGTCTGAAGCTCTATCTAGAGT  1184

Query 1185  CCTTCAAGTAGCTAAGAAAATGAAGTTGATTTCTAATGGAGGAGATTCTGCTGTAGAAATGGATCGGAGAAATG  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  CCTTCAAGTAGCTAAGAAAATGAAGTTGATTTCTAATGGAGGAGATTCTGCTGTAGAAATGGATCGGAGAAATG  1258

Query 1259  TGTCTGAATTTAAGAGTATTAAAAAAACATCATTAATAAAAAACTGTGATTCTAAAAGCCAGAAGTATAATTGT  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TGTCTGAATTTAAGAGTATTAAAAAAACATCATTAATAAAAAACTGTGATTCTAAAAGCCAGAAGTATAATTGT  1332

Query 1333  TTAGTCATGGTGCTATCTCCATGCCATGTGAAGGAAATAAACATAAAATTCGGACCAAATTCTGGCTCTAAAGT  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  TTAGTCATGGTGCTATCTCCATGCCATGTGAAGGAAATAAACATAAAATTCGGACCAAATTCTGGCTCTAAAGT  1406

Query 1407  GCCTTTAGCAACAGTTACAGTAATTGATCAATCAGAAACTAAGAAGAAGGTTTTTCTGTGGAGGACTGCAGCAT  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  GCCTTTAGCAACAGTTACAGTAATTGATCAATCAGAAACTAAGAAGAAGGTTTTTCTGTGGAGGACTGCAGCAT  1480

Query 1481  TTTGGGCATTTACAGTGTTTCTTGGAGATATAATTTTACTCACAG-----------------------------  1525
            |||||||||||||||||||||||||||||||||||||||||||||                             
Sbjct 1481  TTTGGGCATTTACAGTGTTTCTTGGAGATATAATTTTACTCACAGTCCTAGCTTTCAGAATGCTCTCCTTGAAA  1554

Query 1526  --------------------------------------------------------------------------  1525
                                                                                      
Sbjct 1555  TTTCTCGTCTGTTCCTTTTTTCTGAAGAACATGCATCCTGAATGTTGGATCATGAAAAGTCTTGAATGCTGTAC  1628

Query 1526  -----------------------------------------ATGTTGTTATTCATGAGGACCAATGGATTGGCG  1558
                                                     |||||||||||||||||||||||||||||||||
Sbjct 1629  TAGCTCTTCCTGGCTAGGCAGTGGGGAACCACTGTTTTTTAATGTTGTTATTCATGAGGACCAATGGATTGGCG  1702

Query 1559  AGACAGTACTACAATCAACATTTAGCAGTCAGTTATTAAATCTTGGGAGTTATTCATCTATTCAGCCTGAAGAA  1632
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  AGACAGTACTACAATCAACATTTAGCAGTCAGTTATTAAATCTTGGGAGTTATTCATCTATTCAGCCTGAAGAA  1776

Query 1633  TATTCCAGTGTAGTTAGTGAAGTTGTACTTCAAGACTTACTGGCATATGTGTCCTCAAAACATTCCTACCTCAG  1706
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  TATTCCAGTGTAGTTAGTGAAGTTGTACTTCAAGACTTACTGGCATATGTGTCCTCAAAACATTCCTACCTCAG  1850

Query 1707  AGATCTTCCTCCGAGGCAGCCTCAGAGGGTGAACAGTATAGACTTTGTAGAATTGGAGCACCTTCAACCTGATG  1780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  AGATCTTCCTCCGAGGCAGCCTCAGAGGGTGAACAGTATAGACTTTGTAGAATTGGAGCACCTTCAACCTGATG  1924

Query 1781  TATTAGTCCACGCAGTACTAAGAGTTGTTGATTTCACTATACTGACAGAGGCAGTATACAGTTATAGAGGACAG  1854
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  TATTAGTCCACGCAGTACTAAGAGTTGTTGATTTCACTATACTGACAGAGGCAGTATACAGTTATAGAGGACAG  1998

Query 1855  AAGCAGAAAAAAGTTATGTTAACAGTGGAACAGGCCCAAGATCAACATTATGCGCTTGTATTATGGGGTCCTGG  1928
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  AAGCAGAAAAAAGTTATGTTAACAGTGGAACAGGCCCAAGATCAACATTATGCGCTTGTATTATGGGGTCCTGG  2072

Query 1929  AGCAGCCTGGTACCCTCAACTTCAAAGGAAAAA-----------------------------------------  1961
            |||||||||||||||||||||||||||||||||                                         
Sbjct 2073  AGCAGCCTGGTACCCTCAACTTCAAAGGAAAAAAGGTTATATTTGGGAATTTAAATATCTTTTTGTTCAGTGCA  2146

Query 1962  --------------------------------------------------------------------------  1961
                                                                                      
Sbjct 2147  ATTACACACTAGAAAACCTAGAATTGCATACAACGCCTTGGTCATCCTGTGAGTGCTTGTTTGATGATGATATA  2220

Query 1962  --------------------------------------------------------------------------  1961
                                                                                      
Sbjct 2221  AGGGCAATTACATTTAAAGCAAAATTTCAAAAAAGTGCACCCTCCTTTGTGAAGATATCAGACTTAGCAACCCA  2294

Query 1962  ------------------AGGAGTGGTTCTGATTAAAGCCCAGATTTCAGAGCTGGCATTTCCTATTACAGCAT  2017
                              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  CCTAGAGGATAAGTGTTCAGGAGTGGTTCTGATTAAAGCCCAGATTTCAGAGCTGGCATTTCCTATTACAGCAT  2368

Query 2018  CTCAGAAGATAGCGCTAAATGCTCACAGTTCTCTGAAGAGTATTTTTTCTTCTCTTCCCAACATCGTATATACT  2091
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  CTCAGAAGATAGCGCTAAATGCTCACAGTTCTCTGAAGAGTATTTTTTCTTCTCTTCCCAACATCGTATATACT  2442

Query 2092  GGTTGTGCAAAATGTGGATTGGAACTAGAAACAGATGAGAACAGGATCTACAAACAATGTTTTAGCTGCTTGCC  2165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443  GGTTGTGCAAAATGTGGATTGGAACTAGAAACAGATGAGAACAGGATCTACAAACAATGTTTTAGCTGCTTGCC  2516

Query 2166  ATTTACTATGAAGAAAATATATTATAGGCCAGCGTTAATGACTGCCATTGATGGAAGACATGATGTTTGTATCC  2239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517  ATTTACTATGAAGAAAATATATTATAGGCCAGCGTTAATGACTGCCATTGATGGAAGACATGATGTTTGTATCC  2590

Query 2240  GTGTAGAATCAAAGCTGATAGAGAAGATTCTTCTCAACATTTCTGCAGACTGCCTCAACAGAGTGATAGTTCCT  2313
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591  GTGTAGAATCAAAGCTGATAGAGAAGATTCTTCTCAACATTTCTGCAGACTGCCTCAACAGAGTGATAGTTCCT  2664

Query 2314  TCCTCAGAGATCACCTATGGGATGGTCGTGGCAGACCTGTTCCACTCCTTGTTGGCAGTCAGCGCAGAACCTTG  2387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665  TCCTCAGAGATCACCTATGGGATGGTCGTGGCAGACCTGTTCCACTCCTTGTTGGCAGTCAGCGCAGAACCTTG  2738

Query 2388  TGTATTAAAGATTCAGAGCCTTTTTGTGTTAGATGAAAACAGCTATCCATTACAACAAGATTTCTCCCTCCTGG  2461
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739  TGTATTAAAGATTCAGAGCCTTTTTGTGTTAGATGAAAACAGCTATCCATTACAACAAGATTTCTCCCTCCTGG  2812

Query 2462  ATTTTTATCCTGACATTGTAAAGCATGGAGCCAATGCCCGTCTC  2505
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2813  ATTTTTATCCTGACATTGTAAAGCATGGAGCCAATGCCCGTCTC  2856

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.