Construct: ORF ccsbBroadEn_03431

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006542.1_s300c1, BRDN0000397248
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SHLD2 (54537)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54537 SHLD2 shieldin complex subunit 2 NM_019054.3 100% 100%
2 human 54537 SHLD2 shieldin complex subunit 2 XM_017016352.2 93.7% 93% (many diffs)
3 human 54537 SHLD2 shieldin complex subunit 2 NM_001330112.2 92.3% 92.3% 1962_2168del
4 human 54537 SHLD2 shieldin complex subunit 2 XM_006717903.4 87.7% 87.6% 1526_1669del;2106_2312del
5 human 54537 SHLD2 shieldin complex subunit 2 XM_006717905.3 87.7% 87.6% 1526_1669del;2106_2312del
6 human 54537 SHLD2 shieldin complex subunit 2 XM_011539877.2 87.7% 87.6% 1526_1669del;2106_2312del
7 human 54537 SHLD2 shieldin complex subunit 2 XM_011539878.2 87.7% 87.6% 1526_1669del;2106_2312del
8 human 54537 SHLD2 shieldin complex subunit 2 XM_011539879.2 87.7% 87.6% 1526_1669del;2106_2312del
9 human 54537 SHLD2 shieldin complex subunit 2 XM_017016350.1 87.7% 87.6% 1526_1669del;2106_2312del
10 human 54537 SHLD2 shieldin complex subunit 2 XM_017016349.1 85.1% 85% 1_87del;1613_1756del;2193_2399del
11 human 414241 SHLD2P1 shieldin complex subunit 2 ... NR_027632.1 74.8% (many diffs)
12 human 439965 SHLD2P3 shieldin complex subunit 2 ... NR_027634.1 74.7% (many diffs)
13 human 54537 SHLD2 shieldin complex subunit 2 XM_017016353.2 58.2% 58.2% 477_478ins1047
14 human 54537 SHLD2 shieldin complex subunit 2 XM_005269920.4 53.7% 53.7% 477_478ins1047;915_1121del
15 human 439965 SHLD2P3 shieldin complex subunit 2 ... NR_160660.1 37.4% (many diffs)
16 human 439965 SHLD2P3 shieldin complex subunit 2 ... NR_160661.1 35.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2571
ORF length:
2505
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAG TGGAGGATCT CAAGTCCACA TTTTTTGGGG TGCTCCAATT GCTCCACTGA
121AAATCACAGT ATCAGAAGAC ACAGCTTCTT TAATGTCTGT TGCTGACCCC TGGAAAAAAA
181TTCAGCTTTT ATACAGTCAA CATTCTTTAT ATCTGAAGGA TGAAAAACAG CACAAAAATC
241TTGAAAACTA TAAAGTCCCA GAATCTATTG GTTCTCCAGA TCTTAGTGGT CATTTCTTAG
301CAAACTGTAT GAATAGACAT GTTCATGTGA AAGATGACTT TGTACGTTCT GTTTCTGAAA
361CACAGAATAT AGAATCCCAG AAGATTCACT CCTCTAGACT GAGTGATATA ACTAGCTCTA
421ATATGCAAAT ATGTGGATTT AAAAGCACAG TTCCGCATTT CACCGAAGAA GAAAAGTATC
481AAAAGCTTCT CAGTGAAAAT AAAATTAGAG ATGAACAGCC TAAACATCAG CCAGATATAT
541GTGGTAAGAA CTTTAACACA AATTTGTTTC AGTTGGGCCA TAAATGTGCA GCTGTGTTGG
601ATTTGGTTTG TAGTACTGAA AAAATTAATA TAGGGCCTGA AGTGGTACAA AGAGAGTGTG
661TGCCAACAGA ATATCATGAA ATACAAAACC AGTGTTTGGG ATTATTTTCC TCGAACGCAG
721TAGATAAGTC AAGGTCTGAA GCAGCAGTTA GGAAGGTCTC AGACCTTAAA ATATCAACTG
781ATACAGAATT TCTCAGTATA ATTACCTCCA GCCAGGTTGC TTTTTTAGCT CAAAAGAAAG
841ATAAAAGGCG GAGTCCTGTA AATAAAGGGA ATGTAAACAT GGAGACTGAA CCAAAGGCAA
901GTTACGGGGA GATAAGAATA CCTGAAGAGA ATTCGATTCA GCTTGATGGT TTTACAGAAG
961CATATGAAAG TGGACAAAAC CAAGCATATT CCCTTGAACT TTTTAGTCCT GTTTGTCCTA
1021AAACAGAAAA TAGCCGCATT CACATAAACT CTGATAAAGG TCTTGAAGAA CATACAGGAT
1081CTCAAGAACT TTTCAGTTCT GAAGATGAAC TGCCACCAAA TGAGATACGT ATTGAGTTGT
1141GTAGCTCAGG AATACTGTGT TCCCAACTAA ATACCTTCCA CAAAAGTGCT ATTAAAAGAA
1201GCTGTACCTC TGAAGATAAA GTGGGCCAGT CTGAAGCTCT ATCTAGAGTC CTTCAAGTAG
1261CTAAGAAAAT GAAGTTGATT TCTAATGGAG GAGATTCTGC TGTAGAAATG GATCGGAGAA
1321ATGTGTCTGA ATTTAAGAGT ATTAAAAAAA CATCATTAAT AAAAAACTGT GATTCTAAAA
1381GCCAGAAGTA TAATTGTTTA GTCATGGTGC TATCTCCATG CCATGTGAAG GAAATAAACA
1441TAAAATTCGG ACCAAATTCT GGCTCTAAAG TGCCTTTAGC AACAGTTACA GTAATTGATC
1501AATCAGAAAC TAAGAAGAAG GTTTTTCTGT GGAGGACTGC AGCATTTTGG GCATTTACAG
1561TGTTTCTTGG AGATATAATT TTACTCACAG ATGTTGTTAT TCATGAGGAC CAATGGATTG
1621GCGAGACAGT ACTACAATCA ACATTTAGCA GTCAGTTATT AAATCTTGGG AGTTATTCAT
1681CTATTCAGCC TGAAGAATAT TCCAGTGTAG TTAGTGAAGT TGTACTTCAA GACTTACTGG
1741CATATGTGTC CTCAAAACAT TCCTACCTCA GAGATCTTCC TCCGAGGCAG CCTCAGAGGG
1801TGAACAGTAT AGACTTTGTA GAATTGGAGC ACCTTCAACC TGATGTATTA GTCCACGCAG
1861TACTAAGAGT TGTTGATTTC ACTATACTGA CAGAGGCAGT ATACAGTTAT AGAGGACAGA
1921AGCAGAAAAA AGTTATGTTA ACAGTGGAAC AGGCCCAAGA TCAACATTAT GCGCTTGTAT
1981TATGGGGTCC TGGAGCAGCC TGGTACCCTC AACTTCAAAG GAAAAAAGGA GTGGTTCTGA
2041TTAAAGCCCA GATTTCAGAG CTGGCATTTC CTATTACAGC ATCTCAGAAG ATAGCGCTAA
2101ATGCTCACAG TTCTCTGAAG AGTATTTTTT CTTCTCTTCC CAACATCGTA TATACTGGTT
2161GTGCAAAATG TGGATTGGAA CTAGAAACAG ATGAGAACAG GATCTACAAA CAATGTTTTA
2221GCTGCTTGCC ATTTACTATG AAGAAAATAT ATTATAGGCC AGCGTTAATG ACTGCCATTG
2281ATGGAAGACA TGATGTTTGT ATCCGTGTAG AATCAAAGCT GATAGAGAAG ATTCTTCTCA
2341ACATTTCTGC AGACTGCCTC AACAGAGTGA TAGTTCCTTC CTCAGAGATC ACCTATGGGA
2401TGGTCGTGGC AGACCTGTTC CACTCCTTGT TGGCAGTCAG CGCAGAACCT TGTGTATTAA
2461AGATTCAGAG CCTTTTTGTG TTAGATGAAA ACAGCTATCC ATTACAACAA GATTTCTCCC
2521TCCTGGATTT TTATCCTGAC ATTGTAAAGC ATGGAGCCAA TGCCCGTCTC TGCCCAACTT
2581TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)

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