Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_03722
- Subject:
- XR_002958784.1
- Aligned Length:
- 4131
- Identities:
- 1758
- Gaps:
- 2373
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGTGCGTCCAGAGCGGAGGGTGACGGGAGCTGCCTGTGCTGGAGGAATCACTTTTTAGGCGCTTGTTTTGGACC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ATTGCACAAACCCGGGTGCAAACCCCAAGCTCACCAGCGTGAGTGAGCTGGGCCAGCAGCAGGGAGGAGAGGGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAGGTGGGCGAGGAGGGCGCCGCGCACCCCGAGGCCCGTGTGGGCGGTGGGAAGATCCCGGGGGCGGCTTTGGA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CAGCCCCGGCAGCGACCCCTTCCCCAGCCCGACAGGTGAGCGCCAGGCCAGCCGCGGGGTGGAGCCCGCCGTGC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCACCGGCCACCCTCCCCGGTGCTACCACCACCGCGCAGATTATATCTGGGTGTTGGCACCCAGCCACTATTCT 370
Query 1 ----ATGAAGTACATCCTGGTCACGGGTGGGGTCATCTCAGGCATTGGTAAAGGGATCATTGCCAGCAGCATTG 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GCCAATGAAGTACATCCTGGTCACGGGTGGGGTCATCTCAGGCATTGGTAAAGGGATCATTGCCAGCAGCATTG 444
Query 71 GAACGATTCTAAAATCATGTGGACTCCGAGTTACTGCCATAAAAATCGACCCCTATATTAACATCGATGCTGGC 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GAACGATTCTAAAATCATGTGGACTCCGAGTTACTGCCATAAAAATCGACCCCTATATTAACATCGATGCTGGC 518
Query 145 ACTTTTTCACCTTATGAACACGGTGAAGTCTTCGTCTTAAATGATGGTGGAGAAGTTGATTTAGACCTTGGAAA 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 ACTTTTTCACCTTATGAACACGGTGAAGTCTTCGTCTTAAATGATGGTGGAGAAGTTGATTTAGACCTTGGAAA 592
Query 219 TTATGAAAGATTTTTGGATATTAATCTTTATAAAGACAACAATATCACCACGGGGAAGATATATCAGCATGTGA 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TTATGAAAGATTTTTGGATATTAATCTTTATAAAGACAACAATATCACCACGGGGAAGATATATCAGCATGTGA 666
Query 293 TCAATAAAGAGAGGCGTGGTGATTACCTGGGGAAAACAGTGCAAGTTGTCCCTCACATTACTGATGCTGTCCAG 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TCAATAAAGAGAGGCGTGGTGATTACCTGGGGAAAACAGTGCAAGTTGTCCCTCACATTACTGATGCTGTCCAG 740
Query 367 GAGTGGGTTATGAATCAAGCCAAGGTGCCGGTGGATGGTAATAAGGAAGAGCCCCAAATATGCGTTATTGAGCT 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GAGTGGGTTATGAATCAAGCCAAGGTGCCGGTGGATGGTAATAAGGAAGAGCCCCAAATATGCGTTATTGAGCT 814
Query 441 GGGAGGCACCATTGGAGACATCGAAGGAATGCCGTTTGTGGAGGCGTTTAGACAATTCCAGTTTAAGGCGAAAA 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GGGAGGCACCATTGGAGACATCGAAGGAATGCCGTTTGTGGAGGCGTTTAGACAATTCCAGTTTAAGGCGAAAA 888
Query 515 GAGAGAATTTCTGTAATATCCACGTTAGCCTTGTCCCACAGCTCAGTGCTACCGGAGAACAAAAAACCAAACCC 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GAGAGAATTTCTGTAATATCCACGTTAGCCTTGTCCCACAGCTCAGTGCTACCGGAGAACAAAAAACCAAACCC 962
Query 589 ACCCAAAACAGCGTCCGCGCACTGAGGGGTTTAGGCCTGTCTCCAGATCTGATTGTCTGCCGAAGTTCAACGCC 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 ACCCAAAACAGCGTCCGCGCACTGAGGGGTTTAGGCCTGTCTCCAGATCTGATTGTCTGCCGAAGTTCAACGCC 1036
Query 663 CATTGAGATGGCCGTGAAGGAGAAGATTTCTATGTTTTGTCACGTGAACCCTGAACAGGTCATATGTATCCATG 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CATTGAGATGGCCGTGAAGGAGAAGATTTCTATGTTTTGTCACGTGAACCCTGAACAGGTCATATGTATCCATG 1110
Query 737 ATGTTTCTTCCACATACCGAGTTCCTGTGCTTTTAGAGGAACAAAGCATTGTGAAATATTTTAAGGAGAGATTG 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 ATGTTTCTTCCACATACCGAGTTCCTGTGCTTTTAGAGGAACAAAGCATTGTGAAATATTTTAAGGAGAGATTG 1184
Query 811 CACCTGCCCATCGGTGATTCTGCAAGTAATTTGCTTTTTAAGTGGAGAAATATGGCTGACAGGTATGAAAGGTT 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CACCTGCCCATCGGTGATTCTGCAAGTAATTTGCTTTTTAAGTGGAGAAATATGGCTGACAGGTATGAAAGGTT 1258
Query 885 ACAGAAAATATGCTCCATAGCCCTGGTTGGCAAATACACCAAGCTCAGAGACTGCTACGCCTCTGTGTTCAAAG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ACAGAAAATATGCTCCATAGCCCTGGTTGGCAAATACACCAAGCTCAGAGACTGCTACGCCTCTGTGTTCAAAG 1332
Query 959 CCCTGGAACACTCAGCCCTGGCCATCAACCACAAGTTGAATCTGATGTACATAGACTCCATTGATCTGGAGAAG 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 CCCTGGAACACTCAGCCCTGGCCATCAACCACAAGTTGAATCTGATGTACATAGACTCCATTGATCTGGAGAAG 1406
Query 1033 ATCACTGAAACCGAGGACCCTGTGAAATTTCATGAAGCTTGGCAGAAGCTATGCAAAGCTGATGGTATTCTTGT 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 ATCACTGAAACCGAGGACCCTGTGAAATTTCATGAAGCTTGGCAGAAGCTATGCAAAGCTGATGGTATTCTTGT 1480
Query 1107 GCCTGGAGGCTTTGGAATCAGAGGAACATTGGGAAAACTCCAGGCGATTTCTTGGGCAAGGACAAAGAAGATTC 1180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 GCCTGGAGGCTTTGGAATCAGAGGAACATTGGGAAAACTCCAGGCGATTTCTTGGGCAAGGACAAAGAAGATTC 1554
Query 1181 CTTTTCTGGGAGTTTGTCTTGGGATGCAACTAGCAGTGATAGAGTTTGCAAGAAACTGCCTTAACTTGAAAGAT 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CTTTTCTGGGAGTTTGTCTTGGGATGCAACTAGCAGTGATAGAGTTTGCAAGAAACTGCCTTAACTTGAAAGAT 1628
Query 1255 GCTGATTCCACAGAGTTTAGGCCAAATGCCCCAGTTCCTCT--------------------------------- 1295
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 GCTGATTCCACAGAGTTTAGGCCAAATGCCCCAGTTCCTCTGCTTCCCAGGTGGTGCCAATGCTGCTGCTCTGG 1702
Query 1296 -------------------------------------------------------------------------- 1295
Sbjct 1703 GACCACACTTGGAGAACCACTGCTTGAGATGTCGTGTGAGATCGTGTGCAGGCTTTTTGACTACTGGACTTCCT 1776
Query 1296 -------------------------------------------------------------------------- 1295
Sbjct 1777 GCAGTGTCTTAAGTGGAGTTAATTTTTGTCTCTACCATAAAACTCTAATCTTAAAGCCATTACTACTTGGACTT 1850
Query 1296 ---GGTGATTGATATGCCCGAGCACAACCCTGGCAATTTGGGAGGAACAATGAGACTGGGAATAAGAAGAACTG 1366
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 TCAGGTGATTGATATGCCCGAGCACAACCCTGGCAATTTGGGAGGAACAATGAGACTGGGAATAAGAAGAACTG 1924
Query 1367 TTTTCAAAACTGAAAATTCAATATTAAGGAAACTTTATGGTGATGTTCCTTTTATAGAAGAAAGACACAGACAT 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 TTTTCAAAACTGAAAATTCAATATTAAGGAAACTTTATGGTGATGTTCCTTTTATAGAAGAAAGACACAGACAT 1998
Query 1441 CGGTTCGAGGTAAACCCTAACCTGATCAAACAATTTGAGCAGAATGACTTAAGTTTTGTAGGTCAGGATGTTGA 1514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 CGGTTCGAGGTAAACCCTAACCTGATCAAACAATTTGAGCAGAATGACTTAAGTTTTGTAGGTCAGGATGTTGA 2072
Query 1515 TGGAGACAGGATGGAAATCATTGAACTGGCAAATCATCCTTATTTTGTTGGTGTCCAGTTCCATCCTGAGTTTT 1588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 TGGAGACAGGATGGAAATCATTGAACTGGCAAATCATCCTTATTTTGTTGGTGTCCAGTTCCATCCTGAGTTTT 2146
Query 1589 CTTCTAGGCCGATGAAGCCTTCCCCTCCGTATCTGGGGCTGTTACTTGCAGCAACTGGGAACCTGAATGCCTAC 1662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 CTTCTAGGCCGATGAAGCCTTCCCCTCCGTATCTGGGGCTGTTACTTGCAGCAACTGGGAACCTGAATGCCTAC 2220
Query 1663 TTGCAACAGGGTTGCAAACTGTCTTCCAGTGATAGATACAGTGATGCCAGTGATGACAGCTTTTCAGAGCCAAG 1736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 TTGCAACAGGGTTGCAAACTGTCTTCCAGTGATAGATACAGTGATGCCAGTGATGACAGCTTTTCAGAGCCAAG 2294
Query 1737 GATAGCTGAGTTGGAAATAAGC---------------------------------------------------- 1758
||||||||||||||||||||||
Sbjct 2295 GATAGCTGAGTTGGAAATAAGCTGAAATGAATACATGACTGGGAATAATGGGGACTGCCTGTGAGGCCTCTGAA 2368
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 2369 ATAATTGAAGGCAAGATGAAGGAACTATCTGAAGAAATCACTACACTCTTAGAGAATCCCTCTGTTCTCCAGCA 2442
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 2443 AACATGGGATGTAAAGCCTCACAGGGAATCTGATAATACATACTTCTGTCAACCAGAACCAGAGGGGTAGTTTT 2516
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 2517 CTTTTCCCTCCAGAGGCAGCCTTTGGTACTTAAAATATCTGTAGCTGATTAAATTTTTCCCAACAACCTCACTG 2590
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 2591 GGGAGAAAGTGTGTTCATGTTTTGTCCAGCGGATCAGGATGTTAGGATGACGAGCAAGAGTCCAGGTCACTGTG 2664
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 2665 CCTTTGCTGTGTTGTATGGAAAGGATGGCAGGGAACATGCTGTAAGTAATTTTGAGTAAGAAAATGAGTCACTG 2738
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 2739 TGTTACCTGGAACTCAGCCACAGATTTGTGTGTGGTCCAAGATCATTGCAGTTTCTCACCCTGTTTATTTCCTG 2812
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 2813 GTAAAAGTAAAATTGAATAGGTCCAAGACTTGGGGGTGGCAAGTAAGGCTTTGCCTCAGGCACAAAATTTAAGG 2886
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 2887 GGGCTCCAAAAAACTCAGGAATCAAGATCAGCAATACAGTCTGAGTATCCCTTATGTGAAATGCTTGGGGCTAG 2960
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 2961 AAGTGTTTTGAATTTCAGATTTTGGAATATTTGCATATACATGCGATATCTTGGGGATGAGACTCAAGACTAAA 3034
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 3035 CATGAAATTCATTTATGCTTCATATACACCTTATATACATAGCCTAAAGGTAATTTGATACAATATTTTAAATA 3108
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 3109 ATTTTGTGCATGAAACAAAGTTTCGACTGCATTTTGACTGTGATTTCTGGCATGAGATCAGTTATGGAATTTTC 3182
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 3183 CACTTCTAGCGTCATGTTGGCATTCAGAAATTTTGAAATTTTGGAGCATTTTGGATTTTCAGATTAGGGATGCT 3256
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 3257 CAACCTGTATATATATTTTTTAATCGACGTGAAATTCACGTAACATAGAATTAACCATTTTGAAGTGAACAATT 3330
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 3331 TGGTTGCATTCACTGATGTTGAGCAACCACCACCTTTAACTATTTCCAAAACATTTTCATCACTCCAAAATAAA 3404
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 3405 TGCCTGTACACACTAGCAGTCACTCCCTATCTTCCCCTCCACCTGTCCGCTGGCAACCACTGATCTCCTTTTTA 3478
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 3479 TTTCTGTGGCTTTTTCTATTCTGGATATTTCATATAAGTGGAATTACACAATATATGTGGTCTTTTGTGTCTGG 3552
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 3553 CTTCTTCTGAGACAGTAGGAAGGGGGGCTTGGCTTTGGCTCACCCCCACTAGAGCATTTTTTCATGCATTCCCA 3626
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 3627 CTGATCACAAAACCCATACTACTACCTCATTGACACCATACCTGCTAACCTCGAGGCTTTAGTCATACAAAGAA 3700
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 3701 AATGGCCTTTCTGTATTGTTCTTCTGTGCTCTCATAATGCTTAACCATGTCTTTTACTTAAACAATTCCAGGAA 3774
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 3775 CTGGCCTTAGGAGATCCAAATAGGGAACCAAGATTGCAGAGTGTCCCATCTTGGGAGGGAATGCTGAATAATTA 3848
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 3849 ATTGATTTACAGCCTTGTTGCCGCTGGCCAGACCACCAGGTGGCCCATTACTCGAGATGATCATCACAACCAGA 3922
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 3923 TGATGCTAACCTATATCCTCTACCCTTCGCGTGCTTTGTCTGGGAAGTCTTTTGGCCCCATGTCAGTTTCTATT 3996
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 3997 GCATTGAGAGCCCAAGAGCCCCTGGTCAGTCAGGCTTCCATTTAGCATGGCGTTTGCAAGGTTTACCCATGTTG 4070
Query 1759 ------------------------------------------------------------- 1758
Sbjct 4071 TAGCATGTGTCAGAATTTCATTCCTTTCTATGGCTGAATAAAATTCCATTGTATGAATATA 4131
