Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_03781
- Subject:
- NR_144380.1
- Aligned Length:
- 3861
- Identities:
- 1222
- Gaps:
- 2639
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGTGTGGAAAAAGTATGTCGGCAAGTCAGCTGGTTTCCCAGTGCAGGACGCGCTGACAGCTCGAGTGAGCGGAC 74
Query 1 ---------------------------------------------------ATGAAGAAAAACAGAGAAAGATT 23
|||||||||||||||||||||||
Sbjct 75 TGCCCAGGACTTCGGAACTAGACGAGTTCTGTAGAAATCCTGTCAAAGAATATGAAGAAAAACAGAGAAAGATT 148
Query 24 CTGCAATAGAGAGAGAGAATTTGTATATAAATTTAAAGTAGGAAGTCAGTGCTTAGAACTGAGAGTGCCACTCA 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CTGCAATAGAGAGAGAGAATTTGTATATAAATTTAAAGTAGGAAGTCAGTGCTTAGAACTGAGAGTGCCACTCA 222
Query 98 AATTTCCTGTTCAAGAGAATGCCAGTCATTTGCATGGACGTCTGATGCTGCTGCACAGTTTACCGTGCTTTATA 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 AATTTCCTGTTCAAGAGAATGCCAGTCATTTGCATGGACGTCTGATGCTGCTGCACAGTTTACCGTGCTTTATA 296
Query 172 GAAAAAGACTTAAAAGAAGCTCTGACTCAGTTTATAGAAGAAGAATCCCTCAGCGATTATGATAGAGATGCTGA 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GAAAAAGACTTAAAAGAAGCTCTGACTCAGTTTATAGAAGAAGAATCCCTCAGCGATTATGATAGAGATGCTGA 370
Query 246 AGCATCCCTGGCAGCTGTGAAATCAGGTGAAGTAGATTTACATCAGCTGGCGAGTACATGGGCCAAAGCTTATG 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AGCATCCCTGGCAGCTGTGAAATCAGGTGAAGTAGATTTACATCAGCTGGCGAGTACATGGGCCAAAGCTTATG 444
Query 320 CTGAGACCACGTTAGAGCATGCAAGGCCTGAAGAACCCAGCTGGGATGAAGATTTTGCAGATGTGTACCATGAC 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CTGAGACCACGTTAGAGCATGCAAGGCCTGAAGAACCCAGCTGGGATGAAGATTTTGCAGATGTGTACCATGAC 518
Query 394 TTAATTCATTCTCCTGCCTCTGAAACTCTCTTAAATTTGGAACATAATTACTTTGTTAGTATCTCAGAACTGAT 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TTAATTCATTCTCCTGCCTCTGAAACTCTCTTAAATTTGGAACATAATTACTTTGTTAGTATCTCAGAACTGAT 592
Query 468 TGGTGAAAGAGATGTGGAGCTGAAAAAATTACGAGAGAGACAAGGTATTGAAATGGAAAAAGTCATGCAGGAAT 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TGGTGAAAGAGATGTGGAGCTGAAAAAATTACGAGAGAGACAAGGTATTGAAATGGAAAAAGTCATGCAGGAAT 666
Query 542 TGGGAAAATCACTGACAGATCAAGATGTAAATTCACTGGCTGCTCAGCATTTTGAATCCCAGCAAGACCTAGAA 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TGGGAAAATCACTGACAGATCAAGATGTAAATTCACTGGCTGCTCAGCATTTTGAATCCCAGCAAGACCTAGAA 740
Query 616 AATAAATGGTCGAATGAATTAAAACAATCAACTGCCATCCAAAAACAAGAGTATCAAGAATGGGTAATAAAACT 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AATAAATGGTCGAATGAATTAAAACAATCAACTGCCATCCAAAAACAAGAGTATCAAGAATGGGTAATAAAACT 814
Query 690 TCACCAAGACCTAAAAAACCCCAACAACAGCTCCCTTAGTGAGGAAATTAAAGTTCAGCCAAGTCAGTTCAGAG 763
||||||||||||||||||||||||||||||||||||||
Sbjct 815 TCACCAAGACCTAAAAAACCCCAACAACAGCTCCCTTA------------------------------------ 852
Query 764 AATCTGTAGAAGCAATTGGAAGGATTTATGAGGAACAGAGAAAGTTAGAAGAAAGTTTTACCATTCACTTAGGA 837
Sbjct 853 -------------------------------------------------------------------------- 852
Query 838 GCCCAGTTGAAGACCATGCATAATTTGAGATTGCTGAGAGCAGATATGCTGGACTTCTGTAAGCATAAAAGAAA 911
Sbjct 853 -------------------------------------------------------------------------- 852
Query 912 TCATCGAAGTGGTGTGAAACTTCATCGGCTCCAAACAGCTCTGTCACTTTATTCTACATCTCTCTGTGGCCTGG 985
Sbjct 853 -------------------------------------------------------------------------- 852
Query 986 TTTTACTAGTAGATAATCGAATTAATTCATATAGTGGTATTAAAAGAGATTTTGCCACAGTTTGCCAAGAATGC 1059
Sbjct 853 -------------------------------------------------------------------------- 852
Query 1060 ACTGACTTCCATTTCCCCCGAATTGAAGAGCAATTAGAAGTTGTCCAACAGGTGGTACTTTATGCTAGAACCCA 1133
Sbjct 853 -------------------------------------------------------------------------- 852
Query 1134 GCGCAGGAGTAAATTGAAAGAATCACTTGATTCTGGAAACCAAAATGGAGGAAATGATGATAAGACTAAGAATG 1207
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 ----------------------------GATTCTGGAAACCAAAATGGAGGAAATGATGATAAGACTAAGAATG 898
Query 1208 CTGAGAGGAACTATTTAAATGTTTTACCTGGGGAATTTTATATTACACGGCATTCTAATCTCTCAGAAATCCAT 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CTGAGAGGAACTATTTAAATGTTTTACCTGGGGAATTTTATATTACACGGCATTCTAATCTCTCAGAAATCCAT 972
Query 1282 GTTGCTTTCCATCTCTGTGTGGATGACCATGTGAAATCGGGAAACATCACTGCTCGTGATCCTGCCATTATGGG 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 GTTGCTTTCCATCTCTGTGTGGATGACCATGTGAAATCGGGAAACATCACTGCTCGTGATCCTGCCATTATGGG 1046
Query 1356 ACTCCGAAATATACTCAAAGTTTGCTGTACCCATGACATCACAACAATAAGCATTCCTCTCTTGCTGGTACATG 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 ACTCCGAAATATACTCAAAGTTTGCTGTACCCATGACATCACAACAATAAGCATTCCTCTCTTGCTGGTACATG 1120
Query 1430 ATATGTCAGAGGAAATGACTATACCCTGGTGCTTAAGGAGAGCGGAACTTGTGTTCAAGTGTGTCAAAGGTTTC 1503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 ATATGTCAGAGGAAATGACTATACCCTGGTGCTTAAGGAGAGCGGAACTTGTGTTCAAGTGTGTCAAAGGTTTC 1194
Query 1504 ATGATGGAAATGGCTTCATGGGATGGAGGAATTTCTAGGACAGTGCAATTTCTAGTACCACAGAGTATTTCTGA 1577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 ATGATGGAAATGGCTTCATGGGATGGAGGAATTTCTAGGACAGTGCAATTTCTAGTACCACAGAGTATTTCTGA 1268
Query 1578 AGAAATGTTTTATCAACTTAGTAACATGCTTCCCCAGATCTTCCGAGTATCATCAACACTCACTCTGACATCCA 1651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 AGAAATGTTTTATCAACTTAGTAACATGCTTCCCCAGATCTTCCGAGTATCATCAACACTCACTCTGACATCCA 1342
Query 1652 AGCAC--------------------------------------------------------------------- 1656
|||||
Sbjct 1343 AGCACTAAACCCTTATAGATTGACATGCTGGCAGAAGATGATTGTTAAACTCTCCAGGAACTTGTGCTATGCTG 1416
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 1417 GGAATCTGTCAAGCAAAAGATGCCCAGAAAGAGAACTTGCAGCTCAATCCACAAATCAAGATACATGTGTGTGA 1490
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 1491 AACCATTCCAAAAATTTATATACTGCACAAACTGGTGATCAACCCCTAACTTAAACACTTAAAGTCTCTTTATG 1564
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 1565 AATTTCTCTTTTTTTCTTCTCTGTGTTACCTGTGAATATTAGTAATCTAAAACTTTTTATTTATCACACATGGA 1638
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 1639 CACTTGGGAAAGGAAACTTGATTATATTTACATGGAGGCATTTGACTTTTTCAAGAGGCTTGACTCGTCTCAGG 1712
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 1713 TGCAATCCTTAATTAAACATACAAACAAAATTTTCCTTTTACTTTCTTTGCCAAAACAAAATGTAAAAGCACTG 1786
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 1787 AAATATACATTGCAAGTACAAATTTCCTGTGAAAATCTTTTTATAGAAACACAAATGTATAAGACAAATGTGCT 1860
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 1861 TGTTCTTTTAAATTCTCCTGTTTCAGAATCTCTTTTTAATCTACTCCTAAGGATGTACAAGTTAGAGTCAGAAG 1934
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 1935 ACGTTTTGGATTTTTTCCCTCTCTCTCATCCTCCCGCTGTGCCCTTGCACTTGCATATTAATAACATTTCATGG 2008
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 2009 ACTGGGAAATAGTGTTCTTTTTTGCAAGCTTGATGTCAAGTTAGTCTAAACCAGCACCTGGCAGTATTTTAGTG 2082
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 2083 CTCATCAACATTGTGACAATCACACAAGGAAGATCATTTCTACATTTCTGTCCTCCCTGCGTTCTCAGCTTGCT 2156
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 2157 TAACCATTCCTCTACCTCTTGCATTTTTTTGCGGATAAATGTATCCCCATTTCTGCTTCTCTGTTTCCCCTCCT 2230
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 2231 TTTCCATTGTTTTTCCTTATGGTACTACTTTCTCAGGTGCTACATATCATATATTTGTCCCATCTATAACATAT 2304
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 2305 TTAAATGCTATAAGTAGTAACTCCATTAAACAAAGGCATTTACAAAAGCACACAGGTGTTTAGAAAAGCAATAG 2378
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 2379 TTTCATCAATTCCAAGTTATGTGGATATTGTAACTGGCCACAAGAATGAAATGGAGGGCATTTGGTGTCATAAG 2452
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 2453 ATGGCATGTCTTGATGACAAGAAACAAAACGCCCTTCATTAATATGCCTCAGTGTAATAACTATTATAGAAACT 2526
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 2527 GTTGGCAAGCAGAGTGCTTTCCTATAACAGAATGTGTCTTAATTTTCTACTCGAGGGAAAGGTTTGTCCAGGTA 2600
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 2601 ACAACACTAAAGACAACCCTAAGAACACCCACTCCAGCAGTATGTCCATTAGACACTAAAACTCTCCAAATTAT 2674
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 2675 TTGTCAGGGAGCCTGGCGATTCTGCCAAGAAGGCAGGTGTTTTGCCCTTAGAGCCTATACAGTTCTCTTGGAGA 2748
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 2749 AATTGTCTTTCAGGCACCACTGTTAATCACTGAGACTGATTCTAATGCAAAGCAGGGAAGACAGAGGCAGAAAC 2822
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 2823 CAGGAGAGTGGTAGATCAGTGCAGCCCAGATATCGGAATGGAGGAGCAAAGTTTCATTCACGGATGTTTGTTGA 2896
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 2897 ATGCTGCTGCCCAACTCTTCCTTTGTCACCTCTAGGCTATTCCACTAAGTTACTTATAAACTGGTGGCTTTAAC 2970
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 2971 TGAGGGCTGTGTAAAGGTACTATTTGGCATGTGAAGTCAGGATAAATTTATCGAATGTCCGTTTTCCACATGCA 3044
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 3045 ACTGTGTTACAGAAGTAGTAAAATTGGAAGAATCATGTTTATGGTGTTACCACTGATGGAAACACACAAACACC 3118
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 3119 AAGCTAATAATAAATATATAACTTAAAAAGCTAATTATATGCACTGAAATGGTGGGAATTTTAGTGATGCAGTA 3192
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 3193 ATTGAGGAGTCTGGAGTTTTGTATTTGGACCAAGAATTATGAGATGAGGATCTTTTTCTGAGTGTTCTAAAGGG 3266
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 3267 CTTCTTGAGGGGGAGTGGTTTAAAGCACTTCATGAATGATGTGAAGAAGGTACCTTGGGCTGAGACAGCATTCT 3340
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 3341 AGGTACAGATGGCACTCTGTTCAACCAACTGTGGATGGAAAATATTCTGAAAAAAAATACAATAAAAATTTTAA 3414
Query 1657 ------------- 1656
Sbjct 3415 AAATACAATATAA 3427
