Construct: ORF ccsbBroadEn_03781

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005097.1_s300c1, BRDN0000393255
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
C12orf4 (57102)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57102 C12orf4 chromosome 12 open reading ... NM_001304811.1 100% 100%
2 human 57102 C12orf4 chromosome 12 open reading ... NM_020374.4 100% 100%
3 human 57102 C12orf4 chromosome 12 open reading ... NM_001346153.1 92.2% 92.2% 1032_1033ins129
4 human 57102 C12orf4 chromosome 12 open reading ... NM_001346155.1 92.2% 92.2% 1032_1033ins129
5 human 57102 C12orf4 chromosome 12 open reading ... XM_006718992.3 75.6% 75% (many diffs)
6 human 57102 C12orf4 chromosome 12 open reading ... NM_001346156.1 68.6% 68.6% 0_1ins519
7 human 57102 C12orf4 chromosome 12 open reading ... NM_001346157.1 60.8% 60.8% 0_1ins519;513_514ins129
8 human 57102 C12orf4 chromosome 12 open reading ... NM_001352962.1 48.5% 48.5% 0_1ins852
9 human 57102 C12orf4 chromosome 12 open reading ... NR_144379.1 40.1% 1_125del;848_849ins107;1675_3754del
10 human 57102 C12orf4 chromosome 12 open reading ... NR_144380.1 31.6% 1_125del;852_853ins434;1348_3427del
11 human 57102 C12orf4 chromosome 12 open reading ... NR_144382.1 29.4% (many diffs)
12 mouse 28040 D6Wsu163e DNA segment, Chr 6, Wayne S... NM_138594.3 86.2% 94.2% (many diffs)
13 mouse 28040 D6Wsu163e DNA segment, Chr 6, Wayne S... XM_006506217.1 86.2% 94.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1722
ORF length:
1656
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA GAAAAACAGA GAAAGATTCT GCAATAGAGA GAGAGAATTT GTATATAAAT
121TTAAAGTAGG AAGTCAGTGC TTAGAACTGA GAGTGCCACT CAAATTTCCT GTTCAAGAGA
181ATGCCAGTCA TTTGCATGGA CGTCTGATGC TGCTGCACAG TTTACCGTGC TTTATAGAAA
241AAGACTTAAA AGAAGCTCTG ACTCAGTTTA TAGAAGAAGA ATCCCTCAGC GATTATGATA
301GAGATGCTGA AGCATCCCTG GCAGCTGTGA AATCAGGTGA AGTAGATTTA CATCAGCTGG
361CGAGTACATG GGCCAAAGCT TATGCTGAGA CCACGTTAGA GCATGCAAGG CCTGAAGAAC
421CCAGCTGGGA TGAAGATTTT GCAGATGTGT ACCATGACTT AATTCATTCT CCTGCCTCTG
481AAACTCTCTT AAATTTGGAA CATAATTACT TTGTTAGTAT CTCAGAACTG ATTGGTGAAA
541GAGATGTGGA GCTGAAAAAA TTACGAGAGA GACAAGGTAT TGAAATGGAA AAAGTCATGC
601AGGAATTGGG AAAATCACTG ACAGATCAAG ATGTAAATTC ACTGGCTGCT CAGCATTTTG
661AATCCCAGCA AGACCTAGAA AATAAATGGT CGAATGAATT AAAACAATCA ACTGCCATCC
721AAAAACAAGA GTATCAAGAA TGGGTAATAA AACTTCACCA AGACCTAAAA AACCCCAACA
781ACAGCTCCCT TAGTGAGGAA ATTAAAGTTC AGCCAAGTCA GTTCAGAGAA TCTGTAGAAG
841CAATTGGAAG GATTTATGAG GAACAGAGAA AGTTAGAAGA AAGTTTTACC ATTCACTTAG
901GAGCCCAGTT GAAGACCATG CATAATTTGA GATTGCTGAG AGCAGATATG CTGGACTTCT
961GTAAGCATAA AAGAAATCAT CGAAGTGGTG TGAAACTTCA TCGGCTCCAA ACAGCTCTGT
1021CACTTTATTC TACATCTCTC TGTGGCCTGG TTTTACTAGT AGATAATCGA ATTAATTCAT
1081ATAGTGGTAT TAAAAGAGAT TTTGCCACAG TTTGCCAAGA ATGCACTGAC TTCCATTTCC
1141CCCGAATTGA AGAGCAATTA GAAGTTGTCC AACAGGTGGT ACTTTATGCT AGAACCCAGC
1201GCAGGAGTAA ATTGAAAGAA TCACTTGATT CTGGAAACCA AAATGGAGGA AATGATGATA
1261AGACTAAGAA TGCTGAGAGG AACTATTTAA ATGTTTTACC TGGGGAATTT TATATTACAC
1321GGCATTCTAA TCTCTCAGAA ATCCATGTTG CTTTCCATCT CTGTGTGGAT GACCATGTGA
1381AATCGGGAAA CATCACTGCT CGTGATCCTG CCATTATGGG ACTCCGAAAT ATACTCAAAG
1441TTTGCTGTAC CCATGACATC ACAACAATAA GCATTCCTCT CTTGCTGGTA CATGATATGT
1501CAGAGGAAAT GACTATACCC TGGTGCTTAA GGAGAGCGGA ACTTGTGTTC AAGTGTGTCA
1561AAGGTTTCAT GATGGAAATG GCTTCATGGG ATGGAGGAAT TTCTAGGACA GTGCAATTTC
1621TAGTACCACA GAGTATTTCT GAAGAAATGT TTTATCAACT TAGTAACATG CTTCCCCAGA
1681TCTTCCGAGT ATCATCAACA CTCACTCTGA CATCCAAGCA CTACCCAACT TTCTTGTACA
1741AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)

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