Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_03879
- Subject:
- XR_388450.2
- Aligned Length:
- 2868
- Identities:
- 1466
- Gaps:
- 1177
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGTGATTGAGGTCGGGAATAACAAAAACTGGAGACAGAGAGAAGACTAGACTTTAGGAGGAGATGGGTGGGTCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTGGCAGGAAGGAGAACATGATGGCCTTGTCACGTGCTAAGATGTGTGTTATTCACTTGATTGTTGATGAGGTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ACCTGGCATTTATGAATTGGTGCAGCTTTCCGATGCACGGTGTGATTCACGTGGGTGATTCACATGTAGGAATT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CTGGTGTTCTGGTGCCCATTTCTGGTTTGGAAATAGGAGGAAAAGGCTCTAGGTGGAATCTGGGGAATGGGTGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ACATGGGCTTCAGGACATTAGTCAAGCCACTGATCAGACACAAAGTAGTGTCCCAACACGCGTCACCTCCTCCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGTCTTCCACTTGCCACTTGGTCCCTCCTTCCTTATTCCCTCCCTCACCAATGGGCCCAGGCTTCTGATATCCA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TCTGGATGAGCCAGCCAGAGGGACAGGCTGTGTCAGAGGCATGCAAACAAGTATTAGGGTGCAAGTCGGTGGGT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GGGGATAGTACTCCCGAGCTACCAGCGGAGCTGCCGTGAGAGATCGAGAAAGAGAGAGAGCGCGCGCGAGCCCA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GGAACGTCCTAGAGCTGGATCCTTCCTCAGGCCCACCCTTCCCCAGCCCCCAGCCTCCTGCCCAGGAGCTGACT 666
Query 1 ---------------------------------------------------------------ATGGCAGTGTA 11
||||||||.||
Sbjct 667 CTCTCTTACCTGTAGCGTACCTTCTCTAGGCTAGCTACTGGTTTGGGGTTATTGGGTCCAGTCATGGCAGTATA 740
Query 12 CCGCCTGTGTGTGACCACTGGTCCCTACCTGAGGGCCGGCACACTGGACAACATCTCTGTCACACTGGTGGGCA 85
.||.||||||||||||||||||.|||||||||.|||.||||||.||||.|||||||.||..|||.||||.||||
Sbjct 741 TCGGCTGTGTGTGACCACTGGTTCCTACCTGAAGGCTGGCACATTGGATAACATCTATGCTACATTGGTAGGCA 814
Query 86 CGTGTGGTGAAAGCCCCAAGCAGCGGCTAGATCGAATGGGCAGGGACTTCGCCCCTGGATCGGTACAGAAGTAC 159
|.||||||||||||||.||||||..|||.|||||..|.|||||||||||||||.||||||||||.||||||||.
Sbjct 815 CCTGTGGTGAAAGCCCTAAGCAGAAGCTGGATCGCGTAGGCAGGGACTTCGCCTCTGGATCGGTTCAGAAGTAT 888
Query 160 AAGGTGCGTTGCACAGCGGAGCTGGGTGAGCTCTTGCTGCTGCGTGTACACAAGGAGCGCTACGCTTTCTTCCG 233
||||||||.||...|||.||||||||||||.||||||||.||||..|||||||||||||||..|||||||||.|
Sbjct 889 AAGGTGCGCTGTGAAGCAGAGCTGGGTGAGATCTTGCTGTTGCGCTTACACAAGGAGCGCTTTGCTTTCTTCTG 962
Query 234 CAAGGACTCTTGGTACTGTAGCCGCATCTGTGTCACCGAACCGGATGG---TAGTGTATCCCACTTCCCCTGCT 304
|||||||.||||||||||.||.||.|||||||||||.|..||.||||| |..||| ||||||.|||||||
Sbjct 963 CAAGGACCCTTGGTACTGCAGTCGAATCTGTGTCACTGCCCCCGATGGCTCTGCTGT---CCACTTTCCCTGCT 1033
Query 305 ATCAGTGGATTGAAGGCTACTGCACCGTGGAGCTGAGGCCAGGAACAGCAAGAACTATTTGTCAGGACTCTCTT 378
|.||||||||.||.||||||||.||.|||||||||.|||||||||||||||||||.||.||||||||.||||||
Sbjct 1034 ACCAGTGGATCGATGGCTACTGTACTGTGGAGCTGCGGCCAGGAACAGCAAGAACCATCTGTCAGGATTCTCTT 1107
Query 379 CCCCTCCTCCTGGATCACAGGACACGGGAGCTCCGGGCCCGACAAGAATGCTACCGCTGGAAGATCTATGCCCC 452
||||||||.|||||.|||||||.||||||.||||..|||||.||||||||.||.|||||||||||||..|||||
Sbjct 1108 CCCCTCCTTCTGGACCACAGGAAACGGGAACTCCAAGCCCGCCAAGAATGTTATCGCTGGAAGATCTTCGCCCC 1181
Query 453 TGGCTTCCCCTGCATGGTAGACGTCAACAGCTTTCAGGAGATGGAGTCAGACAAGAAATTTGCCTTGACAAAGA 526
|||||||||..|.|||||.||.||||.||||||||||||||||||||||||.|||||||||||||||||.||||
Sbjct 1182 TGGCTTCCCTCGGATGGTGGATGTCAGCAGCTTTCAGGAGATGGAGTCAGATAAGAAATTTGCCTTGACCAAGA 1255
Query 527 CGACAACTTGTGTAGACCAGGGTGACAGCAGTGGGAATCGGTACCTGCCCGGCTTCCCCATGAAAATTGACATC 600
|...|.||||||.|||.||||.|||||.|..||||||.|||||||||||.|||||.||.|||||.|||||||||
Sbjct 1256 CAGTACCTTGTGCAGAACAGGATGACAACTCTGGGAACCGGTACCTGCCTGGCTTTCCTATGAAGATTGACATC 1329
Query 601 CCATCCCTGATGTACATGGAGCCCAATGTTCGATACTCAGCCACCAAGACGATCTCGCTGCTCTTCAATGCCAT 674
|||||.|||.||.|||||||.|||||..|||||||||||||||||||||||..|||.|||.|||||||.|||.|
Sbjct 1330 CCATCTCTGCTGCACATGGAACCCAACATTCGATACTCAGCCACCAAGACGGCCTCACTGATCTTCAACGCCCT 1403
Query 675 CCCTGCGTCCTTGGGAATGAAGCTTCGAGGGCTGTTGGATCGCAAGGGCTCCTGGAAGAAGCTGGATGACATGC 748
.|||||.|||||.||.||||||.|||||||.||..||||.|||||||||||||||||||.||||||.|||||.|
Sbjct 1404 TCCTGCATCCTTTGGCATGAAGATTCGAGGTCTCCTGGACCGCAAGGGCTCCTGGAAGAGGCTGGACGACATCC 1477
Query 749 AGAACATCTTCTGGTGCCATAAGACCTTCACGACAAAGTATGTCACAGAGCACTGGTGTGAAGATCA-CTTCTT 821
.||||||||||||||||||||||||||||||..||.||||.|||||.|||||.||||||||.|| || ||||||
Sbjct 1478 GGAACATCTTCTGGTGCCATAAGACCTTCACTTCAGAGTACGTCACCGAGCATTGGTGTGAGGA-CAGCTTCTT 1550
Query 822 TGGGTACCAGTACCTGAATGGTGTCAATCCCGTCATGCTCCACTGCATCTCTAGCTTGCCCAGCAAGCTGCCTG 895
|||||||||||||||||||||||||||.||.||||||||.||.|||.||||.||||||||||||||||||||||
Sbjct 1551 TGGGTACCAGTACCTGAATGGTGTCAACCCTGTCATGCTTCATTGCCTCTCCAGCTTGCCCAGCAAGCTGCCTG 1624
Query 896 TCACCAATGACATGGTGGCCCCCTTGCTGGGA-CAGGACACATGCCTGCAGACAGAGCTAGAGAGGGGGAACAT 968
|||||||||||||||||||.||.||||||||| |||| |||.|||||.||.||||||||||||||||||.||||
Sbjct 1625 TCACCAATGACATGGTGGCACCTTTGCTGGGACCAGG-CACCTGCCTACAAACAGAGCTAGAGAGGGGGCACAT 1697
Query 969 CTTCCTAGCGGACTACTGGATCCTGGCGGAGGCCCCCACCCACTGCCTAAACGGCCGCCAGCAGTACGTGGCCG 1042
||||||.|||||||||||||||||||||||||||||...|||.|||.|||||||.|.|||.||||||||..|.|
Sbjct 1698 CTTCCTGGCGGACTACTGGATCCTGGCGGAGGCCCCAGTCCATTGCATAAACGGTCTCCAACAGTACGTAACAG 1771
Query 1043 CCCCACTGTGCCTGCTGTGGCTCAGCCCCCAGGGGGCGCTGGTGCCCTTGGCCATCCAGCTCAGCCAGACCCCC 1116
|.||.||.||||||.|||||||||.|||.|||||||.||||.||||.|||||.|||||||||||||||||.||.
Sbjct 1772 CGCCCCTCTGCCTGTTGTGGCTCAACCCACAGGGGGTGCTGCTGCCATTGGCAATCCAGCTCAGCCAGACACCA 1845
Query 1117 GGGCCTGACAGCCCCATCTTCCTGCCCACTGACTCCGAATGGGACTGGCTGCTGGCCAAGACGTGGGTGCGCAA 1190
|||||.||.|||||||||||.|||||||||||.|.|||.|.|||||||||||||||||||||||||||||||||
Sbjct 1846 GGGCCAGAGAGCCCCATCTTTCTGCCCACTGATTGCGAGTTGGACTGGCTGCTGGCCAAGACGTGGGTGCGCAA 1919
Query 1191 CTCTGAGTTCCTGGTGCACGAAAACAACACGCACTTTCTGTGCACGCATTTGCTGTGCGAGGCCTTCGCCATGG 1264
|||||||||..||||||||||.|||||||||||.||||||||||||||||||||.||||||||||||.||||||
Sbjct 1920 CTCTGAGTTTTTGGTGCACGAGAACAACACGCATTTTCTGTGCACGCATTTGCTATGCGAGGCCTTCTCCATGG 1993
Query 1265 CCACGCTGCGCCAGCTGCCGCTCTGCCACCCCATCTACAAGCTCCTACTCCCCCACACTCGATACACGCTGCAG 1338
|.||.|||||.||||||||||||||.||.||..|||||||||||||.||.||.||.|||||.|||||||||||.
Sbjct 1994 CTACACTGCGTCAGCTGCCGCTCTGTCATCCAGTCTACAAGCTCCTGCTTCCTCATACTCGCTACACGCTGCAA 2067
Query 1339 GTGAACACCATCGCGAGGGCCACGCTGCTCAACCCCGAGGGCCTCGTGGACCAGGTCACGTCCATCGGGAGGCA 1412
||||||||||||||.||.|||||||||||||||||.||.||||||||||||.|||
Sbjct 2068 GTGAACACCATCGCAAGAGCCACGCTGCTCAACCCAGACGGCCTCGTGGACAAGG------------------- 2122
Query 1413 AGGCCTCATCTACCTCATGAGCACGGGCCTGGCCCACTTCACCTACACCAATTTCTGCCTTCCGGACAGCCTGC 1486
Sbjct 2123 -------------------------------------------------------------------------- 2122
Query 1487 GGGCCCGCGGCGTCCTGGCTATCCCCAACTACCACTACCGAGACGACGGCCTGAAGATCTGGGCGGCCATTGAG 1560
Sbjct 2123 -------------------------------------------------------------------------- 2122
Query 1561 AGCTTTGTCTCAGAAATCGTGGGCTACTATTATCCCAGTGACGCATCTGTGCAGCAGGATTCGGAGCTGCAGGC 1634
|||||||||||.||.|||.|.||||||||||||||.||.||.||||||||||||||.|..||.||||||||
Sbjct 2123 ---TTTGTCTCAGAGATTGTGAGTTACTATTATCCCAGCGATGCGTCTGTGCAGCAGGACTGTGAACTGCAGGC 2193
Query 1635 CTGGACTGGCGAGATTTTTGCTCAGGCGTTCCTGGGCCGGGAAAGCTCAGGTTTCCCAAGCCGGCTGTGCACCC 1708
||||...||.|||||||||||||||||||||||.||.||||||||.|||||.||||||||||||||||||||||
Sbjct 2194 CTGGGTGGGTGAGATTTTTGCTCAGGCGTTCCTCGGACGGGAAAGTTCAGGCTTCCCAAGCCGGCTGTGCACCC 2267
Query 1709 CAGGAGAGATGGTGAAGTTCCTCACTGCAATCATCTTCAATTGCTCTGCCCAGCACGCTGCTGTCAACAGTGGG 1782
||||||||.|.|||||||..|||||.|||||||||||.||||||||.||||||||||||||.|||||.||||||
Sbjct 2268 CAGGAGAGCTCGTGAAGTATCTCACCGCAATCATCTTTAATTGCTCCGCCCAGCACGCTGCGGTCAATAGTGGG 2341
Query 1783 CAGCATGACTTTGGGGCCTGGATGCCCAATGCTCCATCATCCATGAGGCAGCCCCCACCCCAGACCAAGGG-GA 1855
|||||||||||||||||||||||||||||.||.||||||||||||||||||||.||.||.||||||||||| ||
Sbjct 2342 CAGCATGACTTTGGGGCCTGGATGCCCAACGCCCCATCATCCATGAGGCAGCCTCCGCCTCAGACCAAGGGCGA 2415
Query 1856 CCACCACCCTGAAGACTTACCTAGACACCCTCCCTGAAGTGAACATCAGCTGTAACAACCTCCTCCTCTTCTGG 1929
|||.||..|||
Sbjct 2416 -CACGACAATGA-------------------------------------------------------------- 2426
Query 1930 TTGGTTAGCCAAGAACCCAAGGACCAGAGGCCCCTGGGCACCTACCCAGATGAGCACTTCACAGAGGAGGCCCC 2003
Sbjct 2427 -------------------------------------------------------------------------- 2426
Query 2004 GAGGCGGAGCATCGCCGCCTTCCAGAGCCGCCTGGCCCAGATCTCAAGGGACATCCAGGAGCGGAACCAGGGTC 2077
Sbjct 2427 -------------------------------------------------------------------------- 2426
Query 2078 TGGCACTGCCCTACACCTACCTGGACCCTCCCCTCATTGAGAACAGCGTCTCCATC 2133
Sbjct 2427 -------------------------------------------------------- 2426
