Construct: ORF ccsbBroadEn_03879

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017572.1_s300c1, BRDN0000394841
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ALOXE3 (59344)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 59344 ALOXE3 arachidonate lipoxygenase 3 NM_021628.2 100% 100%
2 human 59344 ALOXE3 arachidonate lipoxygenase 3 NM_001369446.1 99.8% 99.8% 551_552insCAG
3 human 59344 ALOXE3 arachidonate lipoxygenase 3 XM_017024921.2 85.6% 82.6% (many diffs)
4 human 59344 ALOXE3 arachidonate lipoxygenase 3 NM_001165960.1 84.3% 84.3% 1_396del
5 human 59344 ALOXE3 arachidonate lipoxygenase 3 XM_017024922.2 78.6% 74.3% (many diffs)
6 human 59344 ALOXE3 arachidonate lipoxygenase 3 XR_001752580.2 77.8% (many diffs)
7 human 59344 ALOXE3 arachidonate lipoxygenase 3 XM_017024923.2 74.9% 72.2% (many diffs)
8 human 59344 ALOXE3 arachidonate lipoxygenase 3 XM_017024924.2 68.7% 65.7% 1389_1390ins89;1467_1468ins577
9 human 59344 ALOXE3 arachidonate lipoxygenase 3 XM_017024925.2 68.7% 65.7% 1389_1390ins89;1467_1468ins577
10 human 59344 ALOXE3 arachidonate lipoxygenase 3 XR_001752579.2 64.1% 1_273del;1833_1834ins122;2285_3014del
11 mouse 23801 Aloxe3 arachidonate lipoxygenase 3 NM_011786.2 86.4% 88.4% (many diffs)
12 mouse 23801 Aloxe3 arachidonate lipoxygenase 3 XM_006533257.3 57.2% 56.1% (many diffs)
13 mouse 23801 Aloxe3 arachidonate lipoxygenase 3 XR_388449.2 55.7% (many diffs)
14 mouse 23801 Aloxe3 arachidonate lipoxygenase 3 XR_388452.3 54.3% (many diffs)
15 mouse 23801 Aloxe3 arachidonate lipoxygenase 3 XR_388450.2 51.1% (many diffs)
16 mouse 23801 Aloxe3 arachidonate lipoxygenase 3 XR_388451.2 47.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2202
ORF length:
2133
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCAGTGTAC CGCCTGTGTG TGACCACTGG TCCCTACCTG AGGGCCGGCA
121CACTGGACAA CATCTCTGTC ACACTGGTGG GCACGTGTGG TGAAAGCCCC AAGCAGCGGC
181TAGATCGAAT GGGCAGGGAC TTCGCCCCTG GATCGGTACA GAAGTACAAG GTGCGTTGCA
241CAGCGGAGCT GGGTGAGCTC TTGCTGCTGC GTGTACACAA GGAGCGCTAC GCTTTCTTCC
301GCAAGGACTC TTGGTACTGT AGCCGCATCT GTGTCACCGA ACCGGATGGT AGTGTATCCC
361ACTTCCCCTG CTATCAGTGG ATTGAAGGCT ACTGCACCGT GGAGCTGAGG CCAGGAACAG
421CAAGAACTAT TTGTCAGGAC TCTCTTCCCC TCCTCCTGGA TCACAGGACA CGGGAGCTCC
481GGGCCCGACA AGAATGCTAC CGCTGGAAGA TCTATGCCCC TGGCTTCCCC TGCATGGTAG
541ACGTCAACAG CTTTCAGGAG ATGGAGTCAG ACAAGAAATT TGCCTTGACA AAGACGACAA
601CTTGTGTAGA CCAGGGTGAC AGCAGTGGGA ATCGGTACCT GCCCGGCTTC CCCATGAAAA
661TTGACATCCC ATCCCTGATG TACATGGAGC CCAATGTTCG ATACTCAGCC ACCAAGACGA
721TCTCGCTGCT CTTCAATGCC ATCCCTGCGT CCTTGGGAAT GAAGCTTCGA GGGCTGTTGG
781ATCGCAAGGG CTCCTGGAAG AAGCTGGATG ACATGCAGAA CATCTTCTGG TGCCATAAGA
841CCTTCACGAC AAAGTATGTC ACAGAGCACT GGTGTGAAGA TCACTTCTTT GGGTACCAGT
901ACCTGAATGG TGTCAATCCC GTCATGCTCC ACTGCATCTC TAGCTTGCCC AGCAAGCTGC
961CTGTCACCAA TGACATGGTG GCCCCCTTGC TGGGACAGGA CACATGCCTG CAGACAGAGC
1021TAGAGAGGGG GAACATCTTC CTAGCGGACT ACTGGATCCT GGCGGAGGCC CCCACCCACT
1081GCCTAAACGG CCGCCAGCAG TACGTGGCCG CCCCACTGTG CCTGCTGTGG CTCAGCCCCC
1141AGGGGGCGCT GGTGCCCTTG GCCATCCAGC TCAGCCAGAC CCCCGGGCCT GACAGCCCCA
1201TCTTCCTGCC CACTGACTCC GAATGGGACT GGCTGCTGGC CAAGACGTGG GTGCGCAACT
1261CTGAGTTCCT GGTGCACGAA AACAACACGC ACTTTCTGTG CACGCATTTG CTGTGCGAGG
1321CCTTCGCCAT GGCCACGCTG CGCCAGCTGC CGCTCTGCCA CCCCATCTAC AAGCTCCTAC
1381TCCCCCACAC TCGATACACG CTGCAGGTGA ACACCATCGC GAGGGCCACG CTGCTCAACC
1441CCGAGGGCCT CGTGGACCAG GTCACGTCCA TCGGGAGGCA AGGCCTCATC TACCTCATGA
1501GCACGGGCCT GGCCCACTTC ACCTACACCA ATTTCTGCCT TCCGGACAGC CTGCGGGCCC
1561GCGGCGTCCT GGCTATCCCC AACTACCACT ACCGAGACGA CGGCCTGAAG ATCTGGGCGG
1621CCATTGAGAG CTTTGTCTCA GAAATCGTGG GCTACTATTA TCCCAGTGAC GCATCTGTGC
1681AGCAGGATTC GGAGCTGCAG GCCTGGACTG GCGAGATTTT TGCTCAGGCG TTCCTGGGCC
1741GGGAAAGCTC AGGTTTCCCA AGCCGGCTGT GCACCCCAGG AGAGATGGTG AAGTTCCTCA
1801CTGCAATCAT CTTCAATTGC TCTGCCCAGC ACGCTGCTGT CAACAGTGGG CAGCATGACT
1861TTGGGGCCTG GATGCCCAAT GCTCCATCAT CCATGAGGCA GCCCCCACCC CAGACCAAGG
1921GGACCACCAC CCTGAAGACT TACCTAGACA CCCTCCCTGA AGTGAACATC AGCTGTAACA
1981ACCTCCTCCT CTTCTGGTTG GTTAGCCAAG AACCCAAGGA CCAGAGGCCC CTGGGCACCT
2041ACCCAGATGA GCACTTCACA GAGGAGGCCC CGAGGCGGAG CATCGCCGCC TTCCAGAGCC
2101GCCTGGCCCA GATCTCAAGG GACATCCAGG AGCGGAACCA GGGTCTGGCA CTGCCCTACA
2161CCTACCTGGA CCCTCCCCTC ATTGAGAACA GCGTCTCCAT CTTGCCAACT TTCTTGTACA
2221AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)