Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_04142
- Subject:
- XR_001778969.1
- Aligned Length:
- 2545
- Identities:
- 1038
- Gaps:
- 1341
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CGAGCGGAGCGATGGCGGCGGCGCACCGGAAGTGGCACGCCGGAAGCCCGGTGGGCGTGCCGGAGACGTGTCTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ACTGGGAGCCTTGGAGCCGCTTCGCCGGTGTCTGGACCTGGAAGGCTGTGTCTGTTCCTCCTGCGCTTCGTGGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCCAGCGAGGCAGCGTGGGGAGGCGGCGACGACGGCGACGGCGGCGGTCCGGCCTGGGATCGGAGGCCACCGGG 222
Query 1 ---------ATGGCGGAGTCTGTGGAGCGCCTGCAGCAGCGGGTCCAGGAGCTGGAGCGGGAACTTGCCCAGGA 65
|||||.||.||.||||||||.||||..||||||||..||||||||||||.||||||.||||.|||
Sbjct 223 AGCCCAGCCATGGCCGACTCGGTGGAGCGGCTGCGACAGCGGGTTGAGGAGCTGGAGCAGGAACTCGCCCGGGA 296
Query 66 GAGGAGTCTGCAGGTCCCGAGGAG-CGGCGACGGAGGGGGCGGCCGGGTCCGCATCGAGAAGATGAGCTCAGAG 138
|||.|..|.|| |.||..||||.| ||||.|| .||||||||..|||||||.||.||||||||...|||
Sbjct 297 GAGAACCCGGC-GCTCTGGAGGGGACGGCCAC------TGCGGCCGGACCCGCATCCAGGAGATGAGCGACGAG 363
Query 139 GTGGTGGATTCGAATCCCTACAGCCGCTTGATGGCATTGAAACGAATGGGAATTGTAAGCGACTATGAGAAAAT 212
|||.|||||||.||||||||||||||..||||||||||||||||.|||||||||||.||.||||||.|||||||
Sbjct 364 GTGTTGGATTCCAATCCCTACAGCCGTCTGATGGCATTGAAACGGATGGGAATTGTCAGTGACTATAAGAAAAT 437
Query 213 CCGTACCTTTGCCGTAGCAATAGTAGGTGTTGGTGGAGTAGGTAGTGTGACTGCTGAAATGCTGACAAGATGTG 286
||||||||..||.||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||
Sbjct 438 CCGTACCTACGCTGTAGCAATAGTAGGTGTTGGTGGAGTTGGTAGTGTGACTGCTGAAATGCTGACAAGATGTG 511
Query 287 GCATTGGTAAGTTGCTACTCTTTGATTATGACAAGGTGGAACTAGCCAATATGAATAGACTTTTCTTCCAACCT 360
|||||||||||.||||.||||||||.|||||.||||||||.||.|||||.||||||.|.|||||||||||.||.
Sbjct 512 GCATTGGTAAGCTGCTGCTCTTTGACTATGATAAGGTGGAGCTGGCCAACATGAATCGGCTTTTCTTCCAGCCA 585
Query 361 CATCAAGCAGGATTAAGTAAAGTTCAAGCAGCAGAACATACTCTGAGGAACATTAATCCTGATGTTCTTTTTGA 434
.|||||||||||.|.|||||.||.||.|||||||||||.||.||||||||||||||.|||||||||||.|||||
Sbjct 586 TATCAAGCAGGACTGAGTAAGGTCCACGCAGCAGAACACACCCTGAGGAACATTAACCCTGATGTTCTGTTTGA 659
Query 435 AGTACACAACTATAATATAACCACAGTGGAAAACTTTCAACATTTCATGGATAGAATAAGTAATGGTGGGTTAG 508
|||.||||||||.|||||.||||||||||||.|||||.|||||||||||.|||||||||||||||||||.||||
Sbjct 660 AGTCCACAACTACAATATCACCACAGTGGAACACTTTGAACATTTCATGAATAGAATAAGTAATGGTGGATTAG 733
Query 509 AAGAAGGAAAACCTGTTGATCTAGTTCTTAGCTGTGTGGACAATTTTGAAGCTCGAATGACAATAAATACAGCT 582
||||||||.||||||||||.|||||||||||||||||||||||.|||||||||||||||.||||||||||||||
Sbjct 734 AAGAAGGACAACCTGTTGACCTAGTTCTTAGCTGTGTGGACAACTTTGAAGCTCGAATGGCAATAAATACAGCT 807
Query 583 TGTAATGAACTTGGACAAACATGGATGGAATCTGGGGTCAGTGAAAATGCAGTTTCAGGGCATATACAGCTTAT 656
||||||||||||||.||.||||||||||||||||||||||||||||||||||||||.|||||.||.|||||.||
Sbjct 808 TGTAATGAACTTGGTCAGACATGGATGGAATCTGGGGTCAGTGAAAATGCAGTTTCCGGGCACATCCAGCTGAT 881
Query 657 AATTCCTGGAGAATCTGCTTGTTTTGCGTGTGCTCCACCACTTGTAGTTGCTGCAAATATTGATGAAAAGACTC 730
.||.||||||||.||.|||||.||.||||||||.||||||||||||||||||.||||||||||||||||.||.|
Sbjct 882 GATCCCTGGAGAGTCGGCTTGCTTCGCGTGTGCGCCACCACTTGTAGTTGCTTCAAATATTGATGAAAAAACCC 955
Query 731 TGAAACGAGAAGGTGTTTGTGCAGCCAGTCTTCCTACCACTATGGGTGTGGTTGCTGGGATCTTAGTACAAAAC 804
|||||||||||||.||.||.|||||||||||.||.|||||.|||||.|||||.||.||||||||.||||||||.
Sbjct 956 TGAAACGAGAAGGCGTCTGCGCAGCCAGTCTCCCCACCACCATGGGGGTGGTGGCCGGGATCTTGGTACAAAAT 1029
Query 805 GTGTTAAAGTTTCTGTTAAATTTTGGTACTGTTAGTTTTTACCTTGGATACAATGCAATGCAGGATTTTTTTCC 878
||..||||||||||||||||.|||||.|||||.||||||||||||||||||||||||||||||||||||||.||
Sbjct 1030 GTACTAAAGTTTCTGTTAAAATTTGGCACTGTCAGTTTTTACCTTGGATACAATGCAATGCAGGATTTTTTCCC 1103
Query 879 TACTATGTCCATGAAGCCAAATCCTCAGTGTGATGACAGAAATTGCAGGAAGCAGCAGGAGGAATATA------ 946
|||.||||.||||||||||||.||||||||||||||||.|||.||.||.|||||.||.||.|||||.|
Sbjct 1104 TACCATGTTCATGAAGCCAAACCCTCAGTGTGATGACAAAAACTGTAGAAAGCAACAAGAAGAATACAAGATCA 1177
Query 947 ------------------------------------------------------------------------AG 948
||
Sbjct 1178 AATGCCTGTGTGAATTCCTGAGTGCTGCAGAGAACTGAGGAGTAACCCGTGTTGGTTCTGCTTGCTTTACACAG 1251
Query 949 AAAAAGGTAGCAGCACTGCCTAAACAAGAGGTTATA----CAAGAAGAGGAAGAGATAATCCATGAAGATAATG 1018
||.|.||.||||||||||||.|..||.||||.| .| ||.||.||||.||||.|..|.|||||.||.||.|
Sbjct 1252 AAGAGGGCAGCAGCACTGCCCACGCAGGAGGCT-GAGCCCCAGGAGGAGGCAGAGGTGGTTCATGAGGACAACG 1324
Query 1019 AATGGGGTATTGAGCTGGTATCTGAGGTTTCAGAAGAGGAACTGAAAAATTTTTCAGGTCCAGTTCCAGACTTA 1092
|.|||||.|||||||||||.||||||||||||||||||||||||||.||.|.|||||||||.|||||...||||
Sbjct 1325 AGTGGGGCATTGAGCTGGTGTCTGAGGTTTCAGAAGAGGAACTGAAGAACTCTTCAGGTCCTGTTCCCACCTTA 1398
Query 1093 CCTGAAGGAATTACAGTGGCATACACAATTCCAAAAAAGCAAGAAGATTCTGTCACTGAGTTAACAGTGGAAGA 1166
||||||||.||||||||||||||||||.|.|||||.|||...||.|||||.|...||||..|||||||||||||
Sbjct 1399 CCTGAAGGCATTACAGTGGCATACACAGTCCCAAAGAAGACGGAGGATTCGGCTTCTGAAGTAACAGTGGAAGA 1472
Query 1167 TTCTGGTGAAAGCTTGGAAGACCTCATGGCCAAAATGAAGAATATG---------------------------- 1212
.||.||.||||||||||||||.||.|||||||..||||||||||||
Sbjct 1473 CTCCGGCGAAAGCTTGGAAGATCTTATGGCCAGGATGAAGAATATGTAGACAGTGGCTGGCTTCTGTCTTATTT 1546
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 1547 TCTCTGCTTATGCTAGTCCCTTGGAATTGAACAATCGGAACTAATAAAACTTAGCGCCGCCTTAGTTGGCATGT 1620
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 1621 GTATCTTCACGGAGTTGTTATGCTGTGTGGAACTAGTGGTTTCCTCCTGCTTCCGTATACAACCTAATCAGTAC 1694
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 1695 CACAGCGACAGAAAGAGAAGGGGTGGACCATCCCATCCGTGTCTGTGGCCTACGGCTCTGGACGATAAATAGCA 1768
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 1769 CAAATGGAGGATGGACTGACTGTGTGGCCTGGTGGCTGTGGCTGACAGGTGTCTGAGTGAATGGCTTCCTACTG 1842
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 1843 GACAGTTACTCACTACTACTCTGACCAGGAGTGACTTTAAACAGCCTATAGAATAAAAACATCAATGTAAATGA 1916
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 1917 GCTAAATACCTAATAAAAAATGGAAAAAAAAAAAAGAAAAGAATAAAAACATGCCTCAGATAATTCTGGATGAA 1990
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 1991 ATTGAAGCAGAATGTCTTCATTGGTAGTGTATAAACCCATGGATTGAATATTTAAGATGAAGCATAGATAAAAG 2064
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 2065 CAAGCTATGTTCACGGCAGACAGAATTACGTTCAGGAAACATTGGTTATCCTCAGATTTTCATCGATCAAGGAA 2138
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 2139 AAGGCATCGCTCTCTGTAGCGGAAGTGTCTGGTCACCATGTTACTGAAGAACAGACACCGTCCATACTTTGTGC 2212
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 2213 ATCATAGAGTGTTCCTCCATACTTGATTCCATAAATACTGACATGCTAGCAAGGCTTGTCTGAGTGGTGGGCAA 2286
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 2287 AACAACTCAAACCTGCCTCTGCAGAGGTGCACAGGTATTTATTCCCTGCAAGGGCTCCATTTCCCAAGTGTGAC 2360
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 2361 CACTTCAATTGTAAACCGAGGCCTGATGTGAACTATTGGTGGTTTAACCTTGAAGATAGGAAATGTATCATTAT 2434
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 2435 GAATGTCTAAATTCTATGTATTGAGAAATGTTAGTAGCAAGAGTTAAAAGTGCCATTCCCACTTGTAAAATAAA 2508
Query 1213 ----------------------------- 1212
Sbjct 2509 GTTGTAAAGACTCAATGCACCTGCTTTGA 2537
