Construct: ORF ccsbBroadEn_04142

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016930.1_s300c1, BRDN0000391641
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
UBA5 (79876)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79876 UBA5 ubiquitin like modifier act... NM_024818.4 100% 100%
2 human 79876 UBA5 ubiquitin like modifier act... NM_001320210.1 86.1% 86.1% 0_1ins168
3 human 79876 UBA5 ubiquitin like modifier act... NM_198329.3 86.1% 86.1% 0_1ins168
4 human 79876 UBA5 ubiquitin like modifier act... NM_001321238.1 76.6% 75.9% (many diffs)
5 human 79876 UBA5 ubiquitin like modifier act... NM_001321239.1 72.2% 72.2% 0_1ins336
6 human 79876 UBA5 ubiquitin like modifier act... XR_001740272.1 21.1% 1_602del;1414_1415ins136;1679_4941del
7 mouse 66663 Uba5 ubiquitin-like modifier act... NM_025692.3 85.2% 87.6% (many diffs)
8 mouse 66663 Uba5 ubiquitin-like modifier act... XM_006511791.2 62.1% 65.1% (many diffs)
9 mouse 66663 Uba5 ubiquitin-like modifier act... XR_001778969.1 40.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1278
ORF length:
1212
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GGAGTCTGTG GAGCGCCTGC AGCAGCGGGT CCAGGAGCTG GAGCGGGAAC
121TTGCCCAGGA GAGGAGTCTG CAGGTCCCGA GGAGCGGCGA CGGAGGGGGC GGCCGGGTCC
181GCATCGAGAA GATGAGCTCA GAGGTGGTGG ATTCGAATCC CTACAGCCGC TTGATGGCAT
241TGAAACGAAT GGGAATTGTA AGCGACTATG AGAAAATCCG TACCTTTGCC GTAGCAATAG
301TAGGTGTTGG TGGAGTAGGT AGTGTGACTG CTGAAATGCT GACAAGATGT GGCATTGGTA
361AGTTGCTACT CTTTGATTAT GACAAGGTGG AACTAGCCAA TATGAATAGA CTTTTCTTCC
421AACCTCATCA AGCAGGATTA AGTAAAGTTC AAGCAGCAGA ACATACTCTG AGGAACATTA
481ATCCTGATGT TCTTTTTGAA GTACACAACT ATAATATAAC CACAGTGGAA AACTTTCAAC
541ATTTCATGGA TAGAATAAGT AATGGTGGGT TAGAAGAAGG AAAACCTGTT GATCTAGTTC
601TTAGCTGTGT GGACAATTTT GAAGCTCGAA TGACAATAAA TACAGCTTGT AATGAACTTG
661GACAAACATG GATGGAATCT GGGGTCAGTG AAAATGCAGT TTCAGGGCAT ATACAGCTTA
721TAATTCCTGG AGAATCTGCT TGTTTTGCGT GTGCTCCACC ACTTGTAGTT GCTGCAAATA
781TTGATGAAAA GACTCTGAAA CGAGAAGGTG TTTGTGCAGC CAGTCTTCCT ACCACTATGG
841GTGTGGTTGC TGGGATCTTA GTACAAAACG TGTTAAAGTT TCTGTTAAAT TTTGGTACTG
901TTAGTTTTTA CCTTGGATAC AATGCAATGC AGGATTTTTT TCCTACTATG TCCATGAAGC
961CAAATCCTCA GTGTGATGAC AGAAATTGCA GGAAGCAGCA GGAGGAATAT AAGAAAAAGG
1021TAGCAGCACT GCCTAAACAA GAGGTTATAC AAGAAGAGGA AGAGATAATC CATGAAGATA
1081ATGAATGGGG TATTGAGCTG GTATCTGAGG TTTCAGAAGA GGAACTGAAA AATTTTTCAG
1141GTCCAGTTCC AGACTTACCT GAAGGAATTA CAGTGGCATA CACAATTCCA AAAAAGCAAG
1201AAGATTCTGT CACTGAGTTA ACAGTGGAAG ATTCTGGTGA AAGCTTGGAA GACCTCATGG
1261CCAAAATGAA GAATATGTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
1321gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)