Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_04145
- Subject:
- NM_001326297.2
- Aligned Length:
- 2144
- Identities:
- 803
- Gaps:
- 1264
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGTGATGGTGGCCAACAAGAAAAGTCAGGACCAAATGACAGAGGATCTGTCCCTGTTTCTAGGGAACAACAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AATTCGATTCACCGTATGGCTTCATGGTGTATTAGATAAACTTCGCTCTGTTACAACTGAACCCTCTAGTCTGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGTCTTCTGATACCAACATCTTTGATAGTAACGTGCCTTCAAACAAGAGCAATTTCAGTCGGGGAGATGAGAGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGGCATGAAGCTGCAGTGCCACCACTTGCCATTCCTAGCGCGAGACCTGAAAAAAGAGATTCCAGAGTTTCTAC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AAGTTCGCAGGAGTCAAAAACCACAAATGTCAGACAGACTTACGATGATGGAGCTGCAACCCGACTAATGTCAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CAGTGAAACCTTTGAGGGAGCCAGCACCCTCTGAAGATGTGATTGATATTAAGCCAGAACCAGATGATCTCATT 444
Query 1 ------------------------------------------------------ATGAGA-------ATG--TC 11
.|||.| ||| ||
Sbjct 445 GACGAAGACCTCAACTTTGTGCAGGAGAATCCCTTATCTCAGAAAAAACCTACAGTGACACTTACATATGGTTC 518
Query 12 TTC--------------AAAGTTTCCATC-ACCACCT----CTACCAAT-----------TTTTC--------- 46
||| |||.|| ||| ||||||| .||..||| |.|||
Sbjct 519 TTCTCGCCCTTCTATTGAAATTT---ATCGACCACCTGCAAGTAGAAATGCAGATAGTGGTGTTCATTTAAACA 589
Query 47 ---------TTCCACCGGAGC-----------------------------------CAGTGGACTTAGGTTCCA 76
|||.||.|.||| |||.|.|.||.||| |
Sbjct 590 GGTTGCAATTTCAACAGCAGCAGAATAGTATTCATGCTGCCAAGCAGCTTGATATGCAGAGTAGTTGGGT---A 660
Query 77 T----AACA-------------------AGCTCCT------CTT------------------GTTC-------- 95
| |||| ||.|.|| ||| ||||
Sbjct 661 TATGAAACAGGACGTTTGTGTGAACCAGAGGTGCTTAACAGCTTAGAAGAAACGTATAGTCCGTTCTTTAGAAA 734
Query 96 --ACT------GAATGAG---------------CT------AGACAATATTTCC-----------CACCTTTTA 129
||| .|||||| || |||.||..||.|| ||..|.|||
Sbjct 735 CAACTCGGAGAAAATGAGTATGGAGGATGAAAACTTTCGGAAGAGAAAGTTGCCTGTGGTAAGTTCAGTTGTTA 808
Query 130 AGG----AAAAT---ATCAGCTGAT----------ATCAATGAA-------ATTAAAGG------AATGAAAGC 173
|.| ||||| |||| |||| |..|| ||| ||||..|| |..|.||||
Sbjct 809 AAGTAAAAAAATTCAATCA--TGATGGAGAAGAGGAGGAA-GAAGATGATGATTACGGGTCTCGAACAGGAAGC 879
Query 174 AGCT-----ATTTTGACAGTGGAAGCAAA----------------TCTTTTTGA---TCTAAATGTTAGAGTGT 223
|.|| |.|.||.|.|||...||||| |||.||..| ||||||
Sbjct 880 ATCTCCAGCAGTGTGTCTGTGCCTGCAAAGCCTGAAAGGAGACCTTCTCTTCCACCTTCTAAA----------- 942
Query 224 CCAAG--AATGAAGCAAAAATTTCATCTTTGGAGGTTA-AAATGAA--TGAATATT------CAACAACATATG 286
|||| || |||.|||.|.|| ||||.|||.|| |..|||| |.||.|.| |||.||||..|.
Sbjct 943 -CAAGCTAA-----CAAGAATCTGAT-TTTGAAGGCTATATCTGAAGCTCAAGAATCCGTAACAAAAACAACTA 1009
Query 287 AAT----------------GCAACAGACAGTTTGA---------AGA-----------TCAAGAAGAA--GATA 322
|.| |.||||||||.||..| ||| |||||||||| |.||
Sbjct 1010 ACTACTCTACAGTTCCACAGAAACAGACACTTCCAGTTGCTCCCAGAACTCGAACTTCTCAAGAAGAATTGCTA 1083
Query 323 --------------------------------CTGAAT-------CACAGTCAAGAACTACTGATGTAAAAATA 357
|.|||| |.||.|.||||| || |.|||.|.|
Sbjct 1084 GCAGAAGTGGTCCAGGGACAAAGTAGGACCCCCAGAATAAGTCCCCCCATTAAAGAA-----GA-GGAAACAAA 1151
Query 358 ATCGGCTTCCTTAGAAACGTTGAGA---AAGGAACTCAACAGAGGCAATTATTATCCCGACTGCAAATCGACCC 428
|...|.|||..|||||| |.| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 AGGAGATTCTGTAGAAA-----AAAATCAAGGAACTCAACAGAGGCAATTATTATCCCGACTGCAAATCGACCC 1220
Query 429 AGTAATGGCAGAAACTCTGCAGATGAGTCAA------------------------------------------- 459
|||||||||||||||||||||||||||||||
Sbjct 1221 AGTAATGGCAGAAACTCTGCAGATGAGTCAAGATTACTATGACATGGAATCCATGGTCCATGCAGACACAAGAT 1294
Query 460 -------------------------------------------------------------------------- 459
Sbjct 1295 CATTTATTCTGAAGAAGCCAAAGCTGTCTGAGGAAGTAGTAGTGGCACCAAACCAAGAGTCGGGGATGAAGACT 1368
Query 460 -------------------------------------------------------------------------- 459
Sbjct 1369 GCAGATTCCCTTCGGGTACTTTCAGGACACCTTATGCAGACACGAGATCTTGTACAACCAGATAAACCTGCAAG 1442
Query 460 -------------------------------------------------------------------------- 459
Sbjct 1443 TCCCAAGTTTATAGTGACGCTGGATGGTGTCCCCAGCCCCCCAGGATACATGTCAGATCAAGAGGAGGACATGT 1516
Query 460 -------------------------------------------------------------------------- 459
Sbjct 1517 GCTTTGAAGGAATGAAACCCGTAAACCAAACTGCAGCCTCAAACAAGGGACTCAGAGGTCTCCTCCACCCACAG 1590
Query 460 ------------------------------------------------------GCTGAGATGAGTGAACTGAG 479
||||||||||||||||||||
Sbjct 1591 CAGTTGCACTTGCTGAGCAGGCAGCTTGAGGACCCAAATGGTAGCTTTTCTAACGCTGAGATGAGTGAACTGAG 1664
Query 480 TGTGGCACAGAAACCAGAAAAACTTTTGGAGCGCTGCAAGTACTGGCCTGCTTGTAAAAATGGGGATGAGTGTG 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 TGTGGCACAGAAACCAGAAAAACTTTTGGAGCGCTGCAAGTACTGGCCTGCTTGTAAAAATGGGGATGAGTGTG 1738
Query 554 CCTACCATCACCCCATCTCACCCTGCAAAGCCTTCCCCAATTGTAAATTTGCTGAAAAATGTTTGTTTGTTCAC 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 CCTACCATCACCCCATCTCACCCTGCAAAGCCTTCCCCAATTGTAAATTTGCTGAAAAATGTTTGTTTGTTCAC 1812
Query 628 CCAAATTGTAAATATGATGCAAAGTGTACTAAACCAGATTGTCCCTTCACTCATGTGAGTAGAAGAATTCCAGT 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1813 CCAAATTGTAAATATGATGCAAAGTGTACTAAACCAGATTGTCCCTTCACTCATGTGAGTAGAAGAATTCCAGT 1886
Query 702 ACTGTCTCCAAAAC---CAGTTGCACCACCAGCACCACCTTCCAGTAGTCAGCTCTGCCGTTACTTCCCTGCTT 772
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1887 ACTGTCTCCAAAACCAGCAGTTGCACCACCAGCACCACCTTCCAGTAGTCAGCTCTGCCGTTACTTCCCTGCTT 1960
Query 773 GTAAGAAGATGGAATGTCCCTTCTATCATCCAAAACATTGTAGGTTTAACACTCAATGTACAAGACCGGACTGC 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1961 GTAAGAAGATGGAATGTCCCTTCTATCATCCAAAACATTGTAGGTTTAACACTCAATGTACAAGACCGGACTGC 2034
Query 847 ACATTCTACCATCCCACCATTAATGTCCCACCACGACATGCCTTGAAATGGATTCGACCTCAAACCAGCGAA 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2035 ACATTCTACCATCCCACCATTAATGTCCCACCACGACATGCCTTGAAATGGATTCGACCTCAAACCAGCGAA 2106
