Construct: ORF ccsbBroadEn_04145
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014233.1_s300c1, BRDN0000393568
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZC3H14 (79882)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79882 | ZC3H14 | zinc finger CCCH-type conta... | NM_207662.4 | 100% | 100% | |
| 2 | human | 79882 | ZC3H14 | zinc finger CCCH-type conta... | XM_024449713.1 | 73.1% | 69.7% | (many diffs) |
| 3 | human | 79882 | ZC3H14 | zinc finger CCCH-type conta... | XM_006720257.3 | 72.9% | 69.5% | (many diffs) |
| 4 | human | 79882 | ZC3H14 | zinc finger CCCH-type conta... | XM_005268073.4 | 69.8% | 69.8% | 460_852del;1109_1111delCAG |
| 5 | human | 79882 | ZC3H14 | zinc finger CCCH-type conta... | NM_001326304.2 | 57.9% | 45.9% | (many diffs) |
| 6 | human | 79882 | ZC3H14 | zinc finger CCCH-type conta... | NM_001326308.2 | 57.8% | 45.8% | (many diffs) |
| 7 | human | 79882 | ZC3H14 | zinc finger CCCH-type conta... | NM_207661.2 | 45.8% | 36.3% | (many diffs) |
| 8 | human | 79882 | ZC3H14 | zinc finger CCCH-type conta... | NM_001326302.2 | 45.1% | 35.8% | (many diffs) |
| 9 | human | 79882 | ZC3H14 | zinc finger CCCH-type conta... | NM_001326300.2 | 45% | 35.7% | (many diffs) |
| 10 | human | 79882 | ZC3H14 | zinc finger CCCH-type conta... | NM_001326314.2 | 43.5% | 33.1% | (many diffs) |
| 11 | human | 79882 | ZC3H14 | zinc finger CCCH-type conta... | NM_001326305.2 | 43.5% | 33% | (many diffs) |
| 12 | human | 79882 | ZC3H14 | zinc finger CCCH-type conta... | XM_005268070.5 | 43.4% | 34.4% | (many diffs) |
| 13 | human | 79882 | ZC3H14 | zinc finger CCCH-type conta... | NM_001326295.2 | 43.3% | 34.3% | (many diffs) |
| 14 | human | 79882 | ZC3H14 | zinc finger CCCH-type conta... | XM_011537161.3 | 38.8% | 30.1% | (many diffs) |
| 15 | human | 79882 | ZC3H14 | zinc finger CCCH-type conta... | NM_001326315.2 | 37.5% | 29.7% | (many diffs) |
| 16 | human | 79882 | ZC3H14 | zinc finger CCCH-type conta... | NM_001326316.1 | 37.5% | 29.7% | (many diffs) |
| 17 | human | 79882 | ZC3H14 | zinc finger CCCH-type conta... | NM_001326297.2 | 37.4% | 29.6% | (many diffs) |
| 18 | human | 79882 | ZC3H14 | zinc finger CCCH-type conta... | NM_001326301.2 | 36% | 27.2% | (many diffs) |
| 19 | human | 79882 | ZC3H14 | zinc finger CCCH-type conta... | NM_001160104.2 | 36% | 28.5% | (many diffs) |
| 20 | human | 79882 | ZC3H14 | zinc finger CCCH-type conta... | NM_001326310.2 | 35.9% | 28.5% | (many diffs) |
| 21 | human | 79882 | ZC3H14 | zinc finger CCCH-type conta... | NM_001160103.2 | 35.8% | 28.3% | (many diffs) |
| 22 | human | 79882 | ZC3H14 | zinc finger CCCH-type conta... | NM_024824.5 | 35.7% | 28.3% | (many diffs) |
| 23 | human | 79882 | ZC3H14 | zinc finger CCCH-type conta... | NM_001326299.2 | 34.5% | 25.9% | (many diffs) |
| 24 | human | 79882 | ZC3H14 | zinc finger CCCH-type conta... | NM_001326312.2 | 34.5% | 25.8% | (many diffs) |
| 25 | human | 79882 | ZC3H14 | zinc finger CCCH-type conta... | NM_001326296.2 | 34.4% | 26% | (many diffs) |
| 26 | human | 79882 | ZC3H14 | zinc finger CCCH-type conta... | NM_001326307.2 | 34.3% | 26% | (many diffs) |
| 27 | human | 79882 | ZC3H14 | zinc finger CCCH-type conta... | NR_136936.2 | 4.4% | (many diffs) | |
| 28 | mouse | 75553 | Zc3h14 | zinc finger CCCH type conta... | NM_001160108.1 | 87.2% | 83.4% | (many diffs) |
| 29 | mouse | 75553 | Zc3h14 | zinc finger CCCH type conta... | XM_006516333.2 | 61.3% | 58.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 984
- ORF length:
- 918
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG AATGTCTTCA AAGTTTCCAT CACCACCTCT ACCAATTTTT CTTCCACCGG 121 AGCCAGTGGA CTTAGGTTCC ATAACAAGCT CCTCTTGTTC ACTGAATGAG CTAGACAATA 181 TTTCCCACCT TTTAAGGAAA ATATCAGCTG ATATCAATGA AATTAAAGGA ATGAAAGCAG 241 CTATTTTGAC AGTGGAAGCA AATCTTTTTG ATCTAAATGT TAGAGTGTCC AAGAATGAAG 301 CAAAAATTTC ATCTTTGGAG GTTAAAATGA ATGAATATTC AACAACATAT GAATGCAACA 361 GACAGTTTGA AGATCAAGAA GAAGATACTG AATCACAGTC AAGAACTACT GATGTAAAAA 421 TAATCGGCTT CCTTAGAAAC GTTGAGAAAG GAACTCAACA GAGGCAATTA TTATCCCGAC 481 TGCAAATCGA CCCAGTAATG GCAGAAACTC TGCAGATGAG TCAAGCTGAG ATGAGTGAAC 541 TGAGTGTGGC ACAGAAACCA GAAAAACTTT TGGAGCGCTG CAAGTACTGG CCTGCTTGTA 601 AAAATGGGGA TGAGTGTGCC TACCATCACC CCATCTCACC CTGCAAAGCC TTCCCCAATT 661 GTAAATTTGC TGAAAAATGT TTGTTTGTTC ACCCAAATTG TAAATATGAT GCAAAGTGTA 721 CTAAACCAGA TTGTCCCTTC ACTCATGTGA GTAGAAGAAT TCCAGTACTG TCTCCAAAAC 781 CAGTTGCACC ACCAGCACCA CCTTCCAGTA GTCAGCTCTG CCGTTACTTC CCTGCTTGTA 841 AGAAGATGGA ATGTCCCTTC TATCATCCAA AACATTGTAG GTTTAACACT CAATGTACAA 901 GACCGGACTG CACATTCTAC CATCCCACCA TTAATGTCCC ACCACGACAT GCCTTGAAAT 961 GGATTCGACC TCAAACCAGC GAATACCCAA CTTTCTTGTA CAAAGTtggc attataagaa 1021 agcattgctt atcaatttgt tgcaacgaac