Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_04145
- Subject:
- NM_001326300.2
- Aligned Length:
- 1781
- Identities:
- 803
- Gaps:
- 901
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGTCAACAGTGAAACCTTTGAGGGAGCCAGCACCCTCTGAAGATGTGATTGATATTAAGCCAGAACCAGATGA 74
Query 1 -------------------------------------------------------------ATGAGA------- 6
.|||.|
Sbjct 75 TCTCATTGACGAAGACCTCAACTTTGTGCAGGAGAATCCCTTATCTCAGAAAAAACCTACAGTGACACTTACAT 148
Query 7 ATG--TCTTC--------------AAAGTTTCCATC-ACCACCT----CTACCAAT-----------TTTTC-- 46
||| ||||| |||.|| ||| ||||||| .||..||| |.|||
Sbjct 149 ATGGTTCTTCTCGCCCTTCTATTGAAATTT---ATCGACCACCTGCAAGTAGAAATGCAGATAGTGGTGTTCAT 219
Query 47 ----------------TTCCACCGGAGC-----------------------------------CAGTGGACTTA 69
|||.||.|.||| |||.|.|.||.
Sbjct 220 TTAAACAGGTTGCAATTTCAACAGCAGCAGAATAGTATTCATGCTGCCAAGCAGCTTGATATGCAGAGTAGTTG 293
Query 70 GGTTCCAT----AACA-------------------AGCTCCT------CTT------------------GTTC- 95
||| || |||| ||.|.|| ||| ||||
Sbjct 294 GGT---ATATGAAACAGGACGTTTGTGTGAACCAGAGGTGCTTAACAGCTTAGAAGAAACGTATAGTCCGTTCT 364
Query 96 ---------ACT------GAATGAG---------------CT------AGACAATATTTCC-----------CA 122
||| .|||||| || |||.||..||.|| ||
Sbjct 365 TTAGAAACAACTCGGAGAAAATGAGTATGGAGGATGAAAACTTTCGGAAGAGAAAGTTGCCTGTGGTAAGTTCA 438
Query 123 CCTTTTAAGG----AAAAT---ATCAGCTGAT----------ATCAATGAA-------ATTAAAGG------AA 166
..|.||||.| ||||| |||| |||| |..|| ||| ||||..|| |.
Sbjct 439 GTTGTTAAAGTAAAAAAATTCAATCA--TGATGGAGAAGAGGAGGAA-GAAGATGATGATTACGGGTCTCGAAC 509
Query 167 TGAAAGCAGCT-----ATTTTGACAGTGGAAGCAAA----------------TCTTTTTGA---TCTAAATGTT 216
.|.|||||.|| |.|.||.|.|||...||||| |||.||..| ||||||
Sbjct 510 AGGAAGCATCTCCAGCAGTGTGTCTGTGCCTGCAAAGCCTGAAAGGAGACCTTCTCTTCCACCTTCTAAA---- 579
Query 217 AGAGTGTCCAAG--AATGAAGCAAAAATTTCATCTTTGGAGGTTA-AAATGAA--TGAATATT------CAACA 279
|||| || |||.|||.|.|| ||||.|||.|| |..|||| |.||.|.| |||.|
Sbjct 580 --------CAAGCTAA-----CAAGAATCTGAT-TTTGAAGGCTATATCTGAAGCTCAAGAATCCGTAACAAAA 639
Query 280 ACATATGAAT----------------GCAACAGACAGTTTGA---------AGA-----------TCAAGAAGA 317
|||..|.|.| |.||||||||.||..| ||| |||||||||
Sbjct 640 ACAACTAACTACTCTACAGTTCCACAGAAACAGACACTTCCAGTTGCTCCCAGAACTCGAACTTCTCAAGAAGA 713
Query 318 A--GATA--------------------------------CTGAAT-------CACAGTCAAGAACTACTGATGT 350
| |.|| |.|||| |.||.|.||||| || |.
Sbjct 714 ATTGCTAGCAGAAGTGGTCCAGGGACAAAGTAGGACCCCCAGAATAAGTCCCCCCATTAAAGAA-----GA-GG 781
Query 351 AAAAATAATCGGCTTCCTTAGAAACGTTGAGA---AAGGAACTCAACAGAGGCAATTATTATCCCGACTGCAAA 421
|||.|.||...|.|||..|||||| |.| |||||||||||||||||||||||||||||||||||||||
Sbjct 782 AAACAAAAGGAGATTCTGTAGAAA-----AAAATCAAGGAACTCAACAGAGGCAATTATTATCCCGACTGCAAA 850
Query 422 TCGACCCAGTAATGGCAGAAACTCTGCAGATGAGTCAA------------------------------------ 459
||||||||||||||||||||||||||||||||||||||
Sbjct 851 TCGACCCAGTAATGGCAGAAACTCTGCAGATGAGTCAAGATTACTATGACATGGAATCCATGGTCCATGCAGAC 924
Query 460 -------------------------------------------------------------------------- 459
Sbjct 925 ACAAGATCATTTATTCTGAAGAAGCCAAAGCTGTCTGAGGAAGTAGTAGTGGCACCAAACCAAGAGTCGGGGAT 998
Query 460 -------------------------------------------------------------------------- 459
Sbjct 999 GAAGACTGCAGATTCCCTTCGGGTACTTTCAGGACACCTTATGCAGACACGAGATCTTGTACAACCAGATAAAC 1072
Query 460 -------------------------------------------------------------------------- 459
Sbjct 1073 CTGCAAGTCCCAAGTTTATAGTGACGCTGGATGGTGTCCCCAGCCCCCCAGGATACATGTCAGATCAAGAGGAG 1146
Query 460 -------------------------------------------------------------------------- 459
Sbjct 1147 GACATGTGCTTTGAAGGAATGAAACCCGTAAACCAAACTGCAGCCTCAAACAAGGGACTCAGAGGTCTCCTCCA 1220
Query 460 -------------------------------------------------------------GCTGAGATGAGTG 472
|||||||||||||
Sbjct 1221 CCCACAGCAGTTGCACTTGCTGAGCAGGCAGCTTGAGGACCCAAATGGTAGCTTTTCTAACGCTGAGATGAGTG 1294
Query 473 AACTGAGTGTGGCACAGAAACCAGAAAAACTTTTGGAGCGCTGCAAGTACTGGCCTGCTTGTAAAAATGGGGAT 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1295 AACTGAGTGTGGCACAGAAACCAGAAAAACTTTTGGAGCGCTGCAAGTACTGGCCTGCTTGTAAAAATGGGGAT 1368
Query 547 GAGTGTGCCTACCATCACCCCATCTCACCCTGCAAAGCCTTCCCCAATTGTAAATTTGCTGAAAAATGTTTGTT 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 GAGTGTGCCTACCATCACCCCATCTCACCCTGCAAAGCCTTCCCCAATTGTAAATTTGCTGAAAAATGTTTGTT 1442
Query 621 TGTTCACCCAAATTGTAAATATGATGCAAAGTGTACTAAACCAGATTGTCCCTTCACTCATGTGAGTAGAAGAA 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 TGTTCACCCAAATTGTAAATATGATGCAAAGTGTACTAAACCAGATTGTCCCTTCACTCATGTGAGTAGAAGAA 1516
Query 695 TTCCAGTACTGTCTCCAAAAC---CAGTTGCACCACCAGCACCACCTTCCAGTAGTCAGCTCTGCCGTTACTTC 765
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1517 TTCCAGTACTGTCTCCAAAACCAGCAGTTGCACCACCAGCACCACCTTCCAGTAGTCAGCTCTGCCGTTACTTC 1590
Query 766 CCTGCTTGTAAGAAGATGGAATGTCCCTTCTATCATCCAAAACATTGTAGGTTTAACACTCAATGTACAAGACC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1591 CCTGCTTGTAAGAAGATGGAATGTCCCTTCTATCATCCAAAACATTGTAGGTTTAACACTCAATGTACAAGACC 1664
Query 840 GGACTGCACATTCTACCATCCCACCATTAATGTCCCACCACGACATGCCTTGAAATGGATTCGACCTCAAACCA 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 GGACTGCACATTCTACCATCCCACCATTAATGTCCCACCACGACATGCCTTGAAATGGATTCGACCTCAAACCA 1738
Query 914 GCGAA 918
|||||
Sbjct 1739 GCGAA 1743
