Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_04145
- Subject:
- NM_001326305.2
- Aligned Length:
- 1751
- Identities:
- 762
- Gaps:
- 916
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGTCAACAGTGAAACCTTTGAGGGAGCCAGCACCCTCTGAAGATGTGATTGATATTAAGCCAGAACCAGATGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCTCATTGACGAAGACCTCAACTTTGTGCAGGAGAATCCCTTATCTCAGAAAAAACCTACAGTGACACTTACAT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATGGTTCTTCTCGCCCTTCTATTGAAATTTATCGACCACCTGCAAGTAGAAATGCAGATAGTGGTGTTCATTTA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AACAGGTTGCAATTTCAACAGCAGCAGAATAGTATTCATGCTGCCAAGCAGCTTGATATGCAGAGTAGTTGGGT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ATATGAAACAGGACGTTTGTGTGAACCAGAGGTGCTTAACAGCTTAGAAGAAACGTATAGTCCGTTCTTTAGAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ACAACTCGGAGAAAATGAGTATGGAGGATGAAAACTTTCGGAAGAGAAAGTTGCCTGTGGTAAGTTCAGTTGTT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AAAGTAAAAAAATTCAATCATGATGGAGAAGAGGAGGAAGAAGATGATGATTACGGGTCTCGAACAGGAAGCAT 518
Query 1 --------ATGAGAATGT--CTTCAAAGTTT---------CCATC---ACCACCT----------CTACCA--- 39
.||.|..||| ||.|||||..| ||.|| .|||||| |||.||
Sbjct 519 CTCCAGCAGTGTGTCTGTGCCTGCAAAGCCTGAAAGGAGACCTTCTCTTCCACCTTCTAAACAAGCTAACAAGA 592
Query 40 -----ATTTT----------TCT-----TCCA----CCGGAGC-----CAGTGGACTTA---------GGTTCC 75
||||| ||| ||.| |||.|.| || |||.| .|||||
Sbjct 593 ATCTGATTTTGAAGGCTATATCTGAAGCTCAAGAATCCGTAACAAAAACA----ACTAACTACTCTACAGTTCC 662
Query 76 A---TAACA---AGCTCCTCTTGTTC-----ACT---------------GAATGAGCTAG-------------- 109
| .|||| |..|||..|||.|| ||| |||| .|||||
Sbjct 663 ACAGAAACAGACACTTCCAGTTGCTCCCAGAACTCGAACTTCTCAAGAAGAAT-TGCTAGCAGAAGTGGTCCAG 735
Query 110 ------------------ACAATATTTCCCACCTTTTAAG----GAAAATATCAGCTGAT-------------A 148
|.||||..||||.||.||.||| |.|||.|..||..||| |
Sbjct 736 GGACAAAGTAGGACCCCCAGAATAAGTCCCCCCATTAAAGAAGAGGAAACAAAAGGAGATTCTGTAGAAAAAAA 809
Query 149 TCA--------ATGAAATTAAAGGAAT--------------GA---AAG--CAGCTATTTTGACAGTGGAAG-C 194
||| ||||.|| ||||| || ||| ||..||||.||| .|||| |
Sbjct 810 TCAAGATTACTATGACAT----GGAATCCATGGTCCATGCAGACACAAGATCATTTATTCTGA----AGAAGCC 875
Query 195 AAATCTTTTTGATCTAAATGTTAG----AGTG-------TCCAAGA-------ATGAA----GCAAAAATTTCA 246
|||.||.|.||| |..|| |||| .|||||| ||||| |||.| |||
Sbjct 876 AAAGCTGTCTGA-------GGAAGTAGTAGTGGCACCAAACCAAGAGTCGGGGATGAAGACTGCAGA---TTC- 938
Query 247 TCTTTGG--------AGG-----TTAAAATGAATGA------ATATTCAACAA-CATATGAA--TGCAA----C 294
.|||.|| ||| || |||.| || ||.||..|||| ||.||.|| ||||| |
Sbjct 939 CCTTCGGGTACTTTCAGGACACCTT---ATGCA-GACACGAGATCTTGTACAACCAGATAAACCTGCAAGTCCC 1008
Query 295 AGACAGTT-----TGA-------------------------------------AGATCAAGAAGAAGA----TA 322
| |||| ||| |||||||||.||.|| |.
Sbjct 1009 A---AGTTTATAGTGACGCTGGATGGTGTCCCCAGCCCCCCAGGATACATGTCAGATCAAGAGGAGGACATGTG 1079
Query 323 CT------GAATCA---CAGT----CAAGAACTACTGATGTAAAAATAATCGGCTTCCTTAGAAACGTTGAGAA 383
|| ||||.| |.|| ||| |||| |.||.|| |||| |
Sbjct 1080 CTTTGAAGGAATGAAACCCGTAAACCAA-----ACTG-------------CAGCCTC-----AAAC-------A 1123
Query 384 AGGAACTCAACAGAGGCAATTATTATC-----CCGACTGCAAAT------------------------CGACCC 428
|||.||| |||||| |.|| ||.||.|||..| .|||||
Sbjct 1124 AGGGACT---CAGAGG-------TCTCCTCCACCCACAGCAGTTGCACTTGCTGAGCAGGCAGCTTGAGGACCC 1187
Query 429 AGTAATGGCAGAAACTCTGCAGATGAGTCAAGCTGAGATGAGTGAACTGAGTGTGGCACAGAAACCAGAAAAAC 502
| |||||.|| ||.|.| |.|.|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 A--AATGGTAG---CTTTTC-------TAACGCTGAGATGAGTGAACTGAGTGTGGCACAGAAACCAGAAAAAC 1249
Query 503 TTTTGGAGCGCTGCAAGTACTGGCCTGCTTGTAAAAATGGGGATGAGTGTGCCTACCATCACCCCATCTCACCC 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 TTTTGGAGCGCTGCAAGTACTGGCCTGCTTGTAAAAATGGGGATGAGTGTGCCTACCATCACCCCATCTCACCC 1323
Query 577 TGCAAAGCCTTCCCCAATTGTAAATTTGCTGAAAAATGTTTGTTTGTTCACCCAAATTGTAAATATGATGCAAA 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 TGCAAAGCCTTCCCCAATTGTAAATTTGCTGAAAAATGTTTGTTTGTTCACCCAAATTGTAAATATGATGCAAA 1397
Query 651 GTGTACTAAACCAGATTGTCCCTTCACTCATGTGAGTAGAAGAATTCCAGTACTGTCTCCAAAAC---CAGTTG 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1398 GTGTACTAAACCAGATTGTCCCTTCACTCATGTGAGTAGAAGAATTCCAGTACTGTCTCCAAAACCAGCAGTTG 1471
Query 722 CACCACCAGCACCACCTTCCAGTAGTCAGCTCTGCCGTTACTTCCCTGCTTGTAAGAAGATGGAATGTCCCTTC 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1472 CACCACCAGCACCACCTTCCAGTAGTCAGCTCTGCCGTTACTTCCCTGCTTGTAAGAAGATGGAATGTCCCTTC 1545
Query 796 TATCATCCAAAACATTGTAGGTTTAACACTCAATGTACAAGACCGGACTGCACATTCTACCATCCCACCATTAA 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 TATCATCCAAAACATTGTAGGTTTAACACTCAATGTACAAGACCGGACTGCACATTCTACCATCCCACCATTAA 1619
Query 870 TGTCCCACCACGACATGCCTTGAAATGGATTCGACCTCAAACCAGCGAA 918
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 TGTCCCACCACGACATGCCTTGAAATGGATTCGACCTCAAACCAGCGAA 1668
