Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_04145
- Subject:
- NM_001326307.2
- Aligned Length:
- 2216
- Identities:
- 762
- Gaps:
- 1381
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGAGATCGGCACCGAGATCAGCCGCAAGATCCGGAGTGCCATTAAGGGGAAATTACAAGAATTAGGAGCTTA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGTTGATGAAGAACTTCCTGATTACATTATGGTGATGGTGGCCAACAAGAAAAGTCAGGACCAAATGACAGAGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATCTGTCCCTGTTTCTAGGGAACAACACAATTCGATTCACCGTATGGCTTCATGGTGTATTAGATAAACTTCGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TCTGTTACAACTGAACCCTCTAGTCTGAAGTCTTCTGATACCAACATCTTTGATAGTAACGTGCCTTCAAACAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GAGCAATTTCAGTCGGGGAGATGAGAGGAGGCATGAAGCTGCAGTGCCACCACTTGCCATTCCTAGCGCGAGAC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTGAAAAAAGAGATTCCAGAGTTTCTACAAGTTCGCAGGAGTCAAAAACCACAAATGTCAGACAGACTTACGAT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GATGGAGCTGCAACCCGACTAATGTCAACAGTGAAACCTTTGAGGGAGCCAGCACCCTCTGAAGATGTGATTGA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TATTAAGCCAGAACCAGATGATCTCATTGACGAAGACCTCAACTTTGTGCAGGAGAATCCCTTATCTCAGAAAA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AACCTACAGTGACACTTACATATGGTTCTTCTCGCCCTTCTATTGAAATTTATCGACCACCTGCAAGTAGAAAT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GCAGATAGTGGTGTTCATTTAAACAGGTTGCAATTTCAACAGCAGCAGAATAGTATTCATGCTGCCAAGCAGCT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TGATATGCAGAGTAGTTGGGTATATGAAACAGGACGTTTGTGTGAACCAGAGGTGCTTAACAGCTTAGAAGAAA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CGTATAGTCCGTTCTTTAGAAACAACTCGGAGAAAATGAGTATGGAGGATGAAAACTTTCGGAAGAGAAAGTTG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CCTGTGGTAAGTTCAGTTGTTAAAGTAAAAAAATTCAATCATGATGGAGAAGAGGAGGAAGAAGATGATGATTA 962
Query 1 -----------------------------ATGAGAATGT--CTTCAAAGTTT---------CCATC---ACCAC 31
.||.|..||| ||.|||||..| ||.|| .||||
Sbjct 963 CGGGTCTCGAACAGGAAGCATCTCCAGCAGTGTGTCTGTGCCTGCAAAGCCTGAAAGGAGACCTTCTCTTCCAC 1036
Query 32 CT----------CTACCA--------ATTTT----------TCT-----TCCA----CCGGAGC-----CAGTG 63
|| |||.|| ||||| ||| ||.| |||.|.| ||
Sbjct 1037 CTTCTAAACAAGCTAACAAGAATCTGATTTTGAAGGCTATATCTGAAGCTCAAGAATCCGTAACAAAAACA--- 1107
Query 64 GACTTA---------GGTTCCA---TAACA---AGCTCCTCTTGTTC-----ACT---------------GAAT 102
|||.| .|||||| .|||| |..|||..|||.|| ||| ||||
Sbjct 1108 -ACTAACTACTCTACAGTTCCACAGAAACAGACACTTCCAGTTGCTCCCAGAACTCGAACTTCTCAAGAAGAAT 1180
Query 103 GAGCTAG--------------------------------ACAATATTTCCCACCTTTTAAG----GAAAATATC 140
.||||| |.||||..||||.||.||.||| |.|||.|..
Sbjct 1181 -TGCTAGCAGAAGTGGTCCAGGGACAAAGTAGGACCCCCAGAATAAGTCCCCCCATTAAAGAAGAGGAAACAAA 1253
Query 141 AGCTGAT-------------ATCA--------ATGAAATTAAAGGAAT--------------GA---AAG--CA 174
||..||| |||| ||||.|| ||||| || ||| ||
Sbjct 1254 AGGAGATTCTGTAGAAAAAAATCAAGATTACTATGACAT----GGAATCCATGGTCCATGCAGACACAAGATCA 1323
Query 175 GCTATTTTGACAGTGGAAG-CAAATCTTTTTGATCTAAATGTTAG----AGTG-------TCCAAGA------- 229
..||||.||| .|||| ||||.||.|.||| |..|| |||| .||||||
Sbjct 1324 TTTATTCTGA----AGAAGCCAAAGCTGTCTGA-------GGAAGTAGTAGTGGCACCAAACCAAGAGTCGGGG 1386
Query 230 ATGAA----GCAAAAATTTCATCTTTGG--------AGG-----TTAAAATGAATGA------ATATTCAACAA 280
||||| |||.| ||| .|||.|| ||| || |||.| || ||.||..||||
Sbjct 1387 ATGAAGACTGCAGA---TTC-CCTTCGGGTACTTTCAGGACACCTT---ATGCA-GACACGAGATCTTGTACAA 1452
Query 281 -CATATGAA--TGCAA----CAGACAGTT-----TGA------------------------------------- 305
||.||.|| ||||| || |||| |||
Sbjct 1453 CCAGATAAACCTGCAAGTCCCA---AGTTTATAGTGACGCTGGATGGTGTCCCCAGCCCCCCAGGATACATGTC 1523
Query 306 AGATCAAGAAGAAGA----TACT------GAATCA---CAGT----CAAGAACTACTGATGTAAAAATAATCGG 362
|||||||||.||.|| |.|| ||||.| |.|| ||| |||| |.|
Sbjct 1524 AGATCAAGAGGAGGACATGTGCTTTGAAGGAATGAAACCCGTAAACCAA-----ACTG-------------CAG 1579
Query 363 CTTCCTTAGAAACGTTGAGAAAGGAACTCAACAGAGGCAATTATTATC-----CCGACTGCAAAT--------- 422
|.|| |||| ||||.||| |||||| |.|| ||.||.|||..|
Sbjct 1580 CCTC-----AAAC-------AAGGGACT---CAGAGG-------TCTCCTCCACCCACAGCAGTTGCACTTGCT 1631
Query 423 ---------------CGACCCAGTAATGGCAGAAACTCTGCAGATGAGTCAAGCTGAGATGAGTGAACTGAGTG 481
.|||||| |||||.|| ||.|.| |.|.||||||||||||||||||||||
Sbjct 1632 GAGCAGGCAGCTTGAGGACCCA--AATGGTAG---CTTTTC-------TAACGCTGAGATGAGTGAACTGAGTG 1693
Query 482 TGGCACAGAAACCAGAAAAACTTTTGGAGCGCTGCAAGTACTGGCCTGCTTGTAAAAATGGGGATGAGTGTGCC 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1694 TGGCACAGAAACCAGAAAAACTTTTGGAGCGCTGCAAGTACTGGCCTGCTTGTAAAAATGGGGATGAGTGTGCC 1767
Query 556 TACCATCACCCCATCTCACCCTGCAAAGCCTTCCCCAATTGTAAATTTGCTGAAAAATGTTTGTTTGTTCACCC 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1768 TACCATCACCCCATCTCACCCTGCAAAGCCTTCCCCAATTGTAAATTTGCTGAAAAATGTTTGTTTGTTCACCC 1841
Query 630 AAATTGTAAATATGATGCAAAGTGTACTAAACCAGATTGTCCCTTCACTCATGTGAGTAGAAGAATTCCAGTAC 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1842 AAATTGTAAATATGATGCAAAGTGTACTAAACCAGATTGTCCCTTCACTCATGTGAGTAGAAGAATTCCAGTAC 1915
Query 704 TGTCTCCAAAAC---CAGTTGCACCACCAGCACCACCTTCCAGTAGTCAGCTCTGCCGTTACTTCCCTGCTTGT 774
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916 TGTCTCCAAAACCAGCAGTTGCACCACCAGCACCACCTTCCAGTAGTCAGCTCTGCCGTTACTTCCCTGCTTGT 1989
Query 775 AAGAAGATGGAATGTCCCTTCTATCATCCAAAACATTGTAGGTTTAACACTCAATGTACAAGACCGGACTGCAC 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1990 AAGAAGATGGAATGTCCCTTCTATCATCCAAAACATTGTAGGTTTAACACTCAATGTACAAGACCGGACTGCAC 2063
Query 849 ATTCTACCATCCCACCATTAATGTCCCACCACGACATGCCTTGAAATGGATTCGACCTCAAACCAGCGAA 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2064 ATTCTACCATCCCACCATTAATGTCCCACCACGACATGCCTTGAAATGGATTCGACCTCAAACCAGCGAA 2133
