Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_04145
- Subject:
- NM_001326308.2
- Aligned Length:
- 1388
- Identities:
- 803
- Gaps:
- 508
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGTCAACAGTGAAACCTTTGAGGGAGCCAGCACCCTCTGAAGATGTGATTGATATTAAGCCAGAACCAGATGA 74
Query 1 -------------------------------------------------------------ATGAGA------- 6
.|||.|
Sbjct 75 TCTCATTGACGAAGACCTCAACTTTGTGCAGGAGAATCCCTTATCTCAGAAAAAACCTACAGTGACACTTACAT 148
Query 7 ATG--TCTTC--------------AAAGTTTCCATC-ACCACCT----CTACCAAT-----------TTTTC-- 46
||| ||||| |||.|| ||| ||||||| .||..||| |.|||
Sbjct 149 ATGGTTCTTCTCGCCCTTCTATTGAAATTT---ATCGACCACCTGCAAGTAGAAATGCAGATAGTGGTGTTCAT 219
Query 47 ----------------TTCCACCGGAGC-----------------------------------CAGTGGACTTA 69
|||.||.|.||| |||.|.|.||.
Sbjct 220 TTAAACAGGTTGCAATTTCAACAGCAGCAGAATAGTATTCATGCTGCCAAGCAGCTTGATATGCAGAGTAGTTG 293
Query 70 GGTTCCAT----AACA-------------------AGCTCCT------CTT------------------GTTC- 95
||| || |||| ||.|.|| ||| ||||
Sbjct 294 GGT---ATATGAAACAGGACGTTTGTGTGAACCAGAGGTGCTTAACAGCTTAGAAGAAACGTATAGTCCGTTCT 364
Query 96 ---------ACT------GAATGAG---------------CT------AGACAATATTTCC-----------CA 122
||| .|||||| || |||.||..||.|| ||
Sbjct 365 TTAGAAACAACTCGGAGAAAATGAGTATGGAGGATGAAAACTTTCGGAAGAGAAAGTTGCCTGTGGTAAGTTCA 438
Query 123 CCTTTTAAGG----AAAAT---ATCAGCTGAT----------ATCAATGAA-------ATTAAAGG------AA 166
..|.||||.| ||||| |||| |||| |..|| ||| ||||..|| |.
Sbjct 439 GTTGTTAAAGTAAAAAAATTCAATCA--TGATGGAGAAGAGGAGGAA-GAAGATGATGATTACGGGTCTCGAAC 509
Query 167 TGAAAGCAGCT-----ATTTTGACAGTGGAAGCAAA----------------TCTTTTTGA---TCTAAATGTT 216
.|.|||||.|| |.|.||.|.|||...||||| |||.||..| ||||||
Sbjct 510 AGGAAGCATCTCCAGCAGTGTGTCTGTGCCTGCAAAGCCTGAAAGGAGACCTTCTCTTCCACCTTCTAAA---- 579
Query 217 AGAGTGTCCAAG--AATGAAGCAAAAATTTCATCTTTGGAGGTTA-AAATGAA--TGAATATT------CAACA 279
|||| || |||.|||.|.|| ||||.|||.|| |..|||| |.||.|.| |||.|
Sbjct 580 --------CAAGCTAA-----CAAGAATCTGAT-TTTGAAGGCTATATCTGAAGCTCAAGAATCCGTAACAAAA 639
Query 280 ACATATGAAT----------------GCAACAGACAGTTTGA---------AGA-----------TCAAGAAGA 317
|||..|.|.| |.||||||||.||..| ||| |||||||||
Sbjct 640 ACAACTAACTACTCTACAGTTCCACAGAAACAGACACTTCCAGTTGCTCCCAGAACTCGAACTTCTCAAGAAGA 713
Query 318 A--GATA--------------------------------CTGAAT-------CACAGTCAAGAACTACTGATGT 350
| |.|| |.|||| |.||.|.||||| || |.
Sbjct 714 ATTGCTAGCAGAAGTGGTCCAGGGACAAAGTAGGACCCCCAGAATAAGTCCCCCCATTAAAGAA-----GA-GG 781
Query 351 AAAAATAATCGGCTTCCTTAGAAACGTTGAGA---AAGGAACTCAACAGAGGCAATTATTATCCCGACTGCAAA 421
|||.|.||...|.|||..|||||| |.| |||||||||||||||||||||||||||||||||||||||
Sbjct 782 AAACAAAAGGAGATTCTGTAGAAA-----AAAATCAAGGAACTCAACAGAGGCAATTATTATCCCGACTGCAAA 850
Query 422 TCGACCCAGTAATGGCAGAAACTCTGCAGATGAGTCAAGCTGAGATGAGTGAACTGAGTGTGGCACAGAAACCA 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 TCGACCCAGTAATGGCAGAAACTCTGCAGATGAGTCAAGCTGAGATGAGTGAACTGAGTGTGGCACAGAAACCA 924
Query 496 GAAAAACTTTTGGAGCGCTGCAAGTACTGGCCTGCTTGTAAAAATGGGGATGAGTGTGCCTACCATCACCCCAT 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 GAAAAACTTTTGGAGCGCTGCAAGTACTGGCCTGCTTGTAAAAATGGGGATGAGTGTGCCTACCATCACCCCAT 998
Query 570 CTCACCCTGCAAAGCCTTCCCCAATTGTAAATTTGCTGAAAAATGTTTGTTTGTTCACCCAAATTGTAAATATG 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 CTCACCCTGCAAAGCCTTCCCCAATTGTAAATTTGCTGAAAAATGTTTGTTTGTTCACCCAAATTGTAAATATG 1072
Query 644 ATGCAAAGTGTACTAAACCAGATTGTCCCTTCACTCATGTGAGTAGAAGAATTCCAGTACTGTCTCCAAAAC-- 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 ATGCAAAGTGTACTAAACCAGATTGTCCCTTCACTCATGTGAGTAGAAGAATTCCAGTACTGTCTCCAAAACCA 1146
Query 716 -CAGTTGCACCACCAGCACCACCTTCCAGTAGTCAGCTCTGCCGTTACTTCCCTGCTTGTAAGAAGATGGAATG 788
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 GCAGTTGCACCACCAGCACCACCTTCCAGTAGTCAGCTCTGCCGTTACTTCCCTGCTTGTAAGAAGATGGAATG 1220
Query 789 TCCCTTCTATCATCCAAAACATTGTAGGTTTAACACTCAATGTACAAGACCGGACTGCACATTCTACCATCCCA 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 TCCCTTCTATCATCCAAAACATTGTAGGTTTAACACTCAATGTACAAGACCGGACTGCACATTCTACCATCCCA 1294
Query 863 CCATTAATGTCCCACCACGACATGCCTTGAAATGGATTCGACCTCAAACCAGCGAA 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1295 CCATTAATGTCCCACCACGACATGCCTTGAAATGGATTCGACCTCAAACCAGCGAA 1350