Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_04487
• Subject: NR_003510.1
• Aligned Length: 1624
• Identities: 942
• Gaps: 569

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TAAGTGTACATGCTTAGGCCTTCTGAAGCAGCATTTGAAGCTGCAGTCCTGAAAACCATGCAGGCCGGAAGAGT  74

Query    1  -----------------------ATGGCACATGTTTCTTCAGAAACTCAAGATGTTTCCCCCAAAGATGAATTA  51
                                   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  AGATAAAGAAATATTTATTTGAGATGGCACATGTTTCTTCAGAAACTCAAGATGTTTCCCCCAAAGATGAATTA  148

Query   52  ACTGCTTCAGAAGCCTCCACTAGGTCTCCATTGTGTGAACACACCTTCCCTGGGGACTCAGACTTACGGTCAAT  125
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  ACTGCTTCAGAAGCCTCCACTAGGTCTCCATTGTGTGAACACACCTTCCCTGGGGACTCAGACTTACGGTCAAT  222

Query  126  GATTGAAGAACATGCTTTTCAGGTTTTGTCACAAGGATCCTTGTTAGAAAGTCCAAGTTACACAGTTTGTGTCT  199
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GATTGAAGAACATGCTTTTCAGGTTTTGTCACAAGGATCCTTGTTAGAAAGTCCAAGTTACACAGTTTGTGTCT  296

Query  200  CTGAGCCAGATAAAGATGATGATTTTCTTTCTCTGAACTTTCCCAGGAAACTTTGGAAAATAGTGGAAAGTGAC  273
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CTGAGCCAGATAAAGATGATGATTTTCTTTCTCTGAACTTTCCCAGGAAACTTTGGAAAATAGTGGAAAGTGAC  370

Query  274  CAATTCAAGTCTATTTCATGGGATGAGAATGGAACTTGCATAGTGATTAATGAAGAACTCTTCAAGAAAGAAAT  347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CAATTCAAGTCTATTTCATGGGATGAGAATGGAACTTGCATAGTGATTAATGAAGAACTCTTCAAGAAAGAAAT  444

Query  348  TTTGGAAACAAAGGCTCCTTACAGAATATTTCAAACTGATGCTATCAAAAGTTTTGTTCGACAGCTCAACCTTT  421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TTTGGAAACAAAGGCTCCTTACAGAATATTTCAAACTGATGCTATCAAAAGTTTTGTTCGACAGCTCAACCTTT  518

Query  422  ATGGATTTAGTAAAATTCAACAGAATTTTCAAAGATCTGCCTTTCTAGCCACCTTTCTGTCAGAAGAGAAAGAA  495
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  ATGGATTTAGTAAAATTCAACAGAATTTTCAAAGATCTGCCTTTCTAGCCACCTTTCTGTCAGAAGAGAAAGAA  592

Query  496  TCGTCTGTCTTAAGCAAG-TTAAAGT------------------TCTATT-------ATAATC------CA--A  535
            |||||||||||||||||| ||.|.||                  ||||||       |.|.||      ||  |
Sbjct  593  TCGTCTGTCTTAAGCAAGCTTCATGTCTTTGTGTTTCACCACAGTCTATTTGGAGCAACATTCGGAGAACATCA  666

Query  536  ATTTCAAGCGTGGCTATCCCCAACTTTTA-------GTAA---------------------GAGTGAAGA----  577
            .|||||      ||.||.|||    ||||       ||||                     |||||.|||    
Sbjct  667  CTTTCA------GCCATGCCC----TTTACCATCTGGTAACAAGGCTCCCATTTCTACTTGGAGTGGAGATTCC  730

Query  578  --GAAGAATTGGTGTTA-AAAAT--GCTTCACCTAT----ATCTA-CTTTATTCAACGAAGATTTCAACAAGAA  641
              |     |||.|||.| .||||  |.|.|||   |    |||.| ||..|  ||||     |||....|||.|
Sbjct  731  TGG-----TTGCTGTGATGAAATGGGATACAC---TGGGGATCCAGCTGCA--CAAC-----TTTTCGGAAGCA  789

Query  642  GCATTTTAGAGCA--GGGGCT----AACAT---GGA-------------GAATCATAATTCTGCCTT-AGCTGC  692
            |||||      ||  |.||.|    |||||   |||             ||.||||.|      ||| || |..
Sbjct  790  GCATT------CACTGTGGATTTGGAACATCACGGACGTTCTTCATCTTGAGTCATCA------CTTGAG-TAA  850

Query  693  TGAAGCTAG-TGAAGAAAGTTTATTTTCAGCCTC---TAAA---AATTTAAATATGCC--------TCTA-ACA  750
            |.||| ||| ||.||||..|.||.||||..||||   ||||   ||||  ||||| ||        |.|| |.|
Sbjct  851  TAAAG-TAGATGGAGAAGATGTACTTTCTCCCTCACATAAATGCAATT--AATAT-CCGTGCGTGATATATATA  920

Query  751  AGGGAATCTTCTGTCAGACAGAT--AATTGCAA----ATTCATCTGTCCCCATTAGAAG--TGGTTTC------  810
            |.|.||.|.|..|.|.||..|||  |   ||||    | |.|.|||     ||| ||||  ||   ||      
Sbjct  921  AAGCAAACATAAGACTGAAGGATGGA---GCAAGAAGA-TAAACTG-----ATT-GAAGCATG---TCTATAGG  981

Query  811  ---CCTCCTCCTTCACCTTCAACCTCAGTTG------GACCAT----CAGAA----------------------  849
               |||  ||||..|||    ||||...|||      ||..||    |||||                      
Sbjct  982  GAGCCT--TCCTGAACC----ACCTTTCTTGAGCTCTGATTATGTGGCAGAAAGGGAAGATTTTTGAAATTTGA  1049

Query  850  ----------CAAATTGCAA-----CAGATC-------------AACATGCTATTTTAAATCAGTTGACCACTA  895
                      ||||.||.||     ||||||             |||| |.|||||   ||  |||| |.||| 
Sbjct 1050  TACGCTTCACCAAAATGAAACTTTCCAGATCTTCAACTTATGAAAACA-GGTATTT---AT--GTTG-CAACT-  1115

Query  896  TTCAT-------ATGCACT-------CTCATAGTACCTACATGCAAGCAAGGGGCCACAT-TGTGAATT---TT  951
            |.|||       ||| |.|       ||||||.|.|.||.|.|..|||  ..|.||.||| ||..||||   ||
Sbjct 1116  TACATTTAAAAGATG-AGTCGAATTACTCATAATCCTTAGAAGTTAGC--TTGTCCGCATCTGAAAATTCACTT  1186

Query  952  ATTAC----AACCACAA-CT-TCTC-----AATACCACAT------CATATCTCCCTTA----CAA-AATG-GT  1002
             ||||    ||...||| || ||||     ||.||.|.||      .|||        |    ||| |||| |.
Sbjct 1187  -TTACCTTGAAGTTCAATCTGTCTCTGGGAAAGACTAGATTGGAAGAATA--------AAATTCAAGAATGTGA  1251

Query 1003  TATTTTGGGCTGACAGTGGAA---CCA------TCTGCTGTTCCCACACGATATCC-TCTGGTA-TCAGTCAAT  1065
            |.||||.|     .|.|||||   |||      ||.|.||   .||.|.|   ||| ||||.|| |||      
Sbjct 1252  TGTTTTAG-----TAATGGAAAAGCCAAGAGCGTCAGGTG---GCAAAAG---TCCTTCTGTTACTCA------  1308

Query 1066  GAGGCTCCATATCGTAACATGCTACCAGCAGGCAACCCGTGGTTGCAAATGCCTACGATCGCT----------G  1129
             ||            ||.|||||  |.|.|                ||||.|||  ..||.||          .
Sbjct 1309  -AG------------AAAATGCT--CTGAA----------------AAATTCCT--TTTCTCTTTTTTTTTTGT  1349

Query 1130  ATAGATCAGCTGCCCCTCATTCC---------AGGCTAGCTCTTCAACCATCACCACTGGACAAATATCACCCT  1194
            |.||||.|.||.|.|||||  ||         ||| || .|.|||     |||.||.|.||||        |||
Sbjct 1350  AAAGATTAACTCCACCTCA--CCACCACAATGAGG-TA-TTTTTC-----TCAGCAATTGACA--------CCT  1406

Query 1195  AATTAC---------------AAC----------------------------------------------  1203
            ..||||               |||                                              
Sbjct 1407  GTTTACTCAGTTACTCCCTGTAACTATGTTATGCTGTGAAGTAGGCAATACAGTTGTTAAAGAAGAATAA  1476