Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_04772
- Subject:
- NR_028143.1
- Aligned Length:
- 2981
- Identities:
- 881
- Gaps:
- 1978
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTTTTAGACTGCCTACCAGCGCAGCCTGAGCCGCTGAGTGCCGGTCAGCGGGCGCCGAGAATTGGACCAAATGG 74
Query 1 ------------------------------------------------------ATGGCGTCCGAACTTTGTAA 20
|||||.||||||.|.|||||
Sbjct 75 ACCAGTTTTGACAAGATGTAGTGCGACAGCACTTCCGGTTGGACATGTTCAGTCATGGCATCCGAAATCTGTAA 148
Query 21 GACGATCTCTGTGGCAAGGCTAGAAAAGCACAAGAATTTGTTCTTAAATTATAGGAATCTGCACCATTTTCCAT 94
|||||||||||||||.|||||.|||||||||||||||||||||||||||||.|||||||||||||||||||||.
Sbjct 149 GACGATCTCTGTGGCCAGGCTTGAAAAGCACAAGAATTTGTTCTTAAATTACAGGAATCTGCACCATTTTCCAC 222
Query 95 TGGAGTTACTGAAAGATGAGGGACTGCAGTACTTGGAGAGACTCTATATGAAAAGGAACTCCCTGACATCCTTG 168
|||||||.|||||.||||||||.||||||.||.|||||||.|||||||||||||||||||||||.|||.|||||
Sbjct 223 TGGAGTTGCTGAAGGATGAGGGGCTGCAGCACCTGGAGAGGCTCTATATGAAAAGGAACTCCCTCACAACCTTG 296
Query 169 CCAGAAAACCTTGCTCAGAAGCTTCCAAACCTTGTGGAACTATACCTGCACTCAAATAACATAGTTGTGGTTCC 242
|||||||||||||||||||||||||||||||||||||||||.|||||.||||||||||||||||||||||||||
Sbjct 297 CCAGAAAACCTTGCTCAGAAGCTTCCAAACCTTGTGGAACTGTACCTTCACTCAAATAACATAGTTGTGGTTCC 370
Query 243 GGAAGCCATTGGGTCTCTTGTAAAACTCCAATGTCTGGATCTTAGTGACAATGCCTTAGAAATTGTTTGCCCAG 316
.||||||||.|||||.||.||.||||||||.|||||||||||.|||||||||||||||||.||.||||||||||
Sbjct 371 AGAAGCCATCGGGTCCCTCGTGAAACTCCAGTGTCTGGATCTCAGTGACAATGCCTTAGAGATCGTTTGCCCAG 444
Query 317 AAATTGGTCGTCTGAGAGCTTTACGTCATCTTCGATTAGCTAATAACCAACTGCAATTCCTACCTCCAGAGGTT 390
||||.|||.||||||||||.||.||||||||||||||||||||||||||.||.||.||||||||||
Sbjct 445 AAATCGGTGGTCTGAGAGCGTTGCGTCATCTTCGATTAGCTAATAACCAGCTACAGTTCCTACCTC-------- 510
Query 391 GGCGATTTGAAGGAGCTGCAGACACTAGACATTTCTACCAATCGTTTGCTAACTTTACCCGAGAGGCTTCACAT 464
Sbjct 511 -------------------------------------------------------------------------- 510
Query 465 GTGCCTTTCTCTGCAGTACCTCACTGTGGACCGAAATCGTCTATGGTATGTGCCGCGCCATCTCTGCCAGCTGC 538
||||||||||||||||||||.|||||.|||||.|.||||||||||||||||||||||||||
Sbjct 511 -------------CAGTACCTCACTGTGGACCGCAATCGGCTATGCTGTGTGCCGCGCCATCTCTGCCAGCTGC 571
Query 539 CCAGCCTCAATGAGCTCTCCATGGCTGGAAACCGTCTTGCATTTTTGCCACTTGATTTAGGTCGATCTCGAGAA 612
|||||||||||||||||||||||||||||||||.||||||||.||||||..|||||||||||||.||.||||||
Sbjct 572 CCAGCCTCAATGAGCTCTCCATGGCTGGAAACCATCTTGCATCTTTGCCCATTGATTTAGGTCGCTCCCGAGAA 645
Query 613 CTACAGTATGTATACGTGGATAACAACATTCACCTGAAAGGCTTGCCATCTTATCTGTACAATAAAGTCATCGG 686
||.|||||.||.||.||||||||||||||.||.|||||.|||.||||.||.||.||.|||||.|||||||||||
Sbjct 646 CTGCAGTACGTGTATGTGGATAACAACATCCAGCTGAAGGGCCTGCCCTCATACCTCTACAACAAAGTCATCGG 719
Query 687 GTGCAGTGGCTGTGGTGCTCCCATTCAAGTTTCCGAGGTGAAGCTGCTTTCCTTTTCATCAGGGCAGCGAACCG 760
.||||..||||||||....|||||.|||.|.||.|||||||.||||||..|.||||||||.|||||||..||.|
Sbjct 720 CTGCAACGGCTGTGGCATCCCCATCCAATTGTCAGAGGTGAGGCTGCTGACATTTTCATCTGGGCAGCTGACAG 793
Query 761 TTTTCCTCCCAGCTGAGGTGAAGGCCATAGGGACGGAGCATGATCACGTCCTCCCTCTGCAGGAATTGGCTATG 834
|.|||||||||||.|||||||||.|.|||||.||.|||.|.|||||.|||||.||||||||.|||.||.|.|||
Sbjct 794 TCTTCCTCCCAGCAGAGGTGAAGACAATAGGCACAGAGAAGGATCATGTCCTGCCTCTGCAAGAACTGACCATG 867
Query 835 AGAGGGCTGTATCATACCTACCACAGCTTGCT---GAAAGATTTGAACTTTCTGTCTCCAATCTCATTACCCAG 905
.|..|.||.||.|..|||||||||.| ||| |||||||.||||||||.||||||||||||||||||||||
Sbjct 868 CGGAGTCTCTACCGCACCTACCACGG---GCTTTGGAAAGATCTGAACTTTTTGTCTCCAATCTCATTACCCAG 938
Query 906 AAGTCTCCTAGAGCTGCTGCACTGCCCTCTGGGGCACTGTCATCGGTGTAGTGAGCCTATGTTTACCATCGTCT 979
|||||||||.|||||||||||||||||.||||||||||||||.|.||||||||||||.|||||||||.||||||
Sbjct 939 AAGTCTCCTGGAGCTGCTGCACTGCCCCCTGGGGCACTGTCACCTGTGTAGTGAGCCCATGTTTACCTTCGTCT 1012
Query 980 ACCCCAAGCTCTTTCCCTTGAGAGAGACGCCAATGGCAGGGCTGCACCAGTGGAAGACAACTGTTAGTTTTGTG 1053
|.||.|||.||||.|||||||||||||||||.||||||||.|||||||||.|||.|||||.|.||.|.||.|||
Sbjct 1013 ATCCTAAGATCTTCCCCTTGAGAGAGACGCCGATGGCAGGCCTGCACCAGAGGAGGACAAGTATTGGCTTCGTG 1086
Query 1054 GCTTACTGCTGCTCCACCCAGTGTCTGCAGACTTTTGACCTGCTGAGT-------------------------- 1101
||||||||||||||||||||||||||||.|||||||.||||||||.||
Sbjct 1087 GCTTACTGCTGCTCCACCCAGTGTCTGCGGACTTTTAACCTGCTGTGTTGATAAACACTCGAGAGCCTTAGGAG 1160
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1161 CACTGCCAGCTCAGCCACTGCGACTGCCTTCCATCGCCAGTGTGTGCGGCCAGGCCAGGAGAGTCCAGCCAGGC 1234
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1235 AGGACAGACCCTTCCATCCTGCCTGCCCTGTCCTGAGGAGGGCCGTGCTGAACTCTGGGAATGTCCTGATTGGG 1308
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1309 CTTCACAACTAAAAGGCCTTCGCTTTTCCCTCAAGTCGGAATACATCCTCCCCCAAATGAAGGACGTGTTGTCT 1382
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1383 TCTGTGTTTTTCTTTGTATGTGAGTGTGTCTCATATATAAACTTAGTCAAATGAGCTTCCCCACATCTAATTTA 1456
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1457 AAGCGAGCTGCAGTTCCCTGAAGAACTCTTAATTTGATAATAGAACCAAATTAACTGTTGGATGACATACGTTT 1530
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1531 GGTGATGATCCTGCCTTCCCCCAGAGGATGATTTCCCCTGGAGATTATTCTTAGGAGCTTCTCCATTGGAAACT 1604
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1605 TGTCACTTTCTAGAGTCTCTGCAACGCCTATGGCCTCAGCAGCCAGCATAGCAGGGCAGGGTGCCCGGGCTGGA 1678
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1679 GCAGCTAGGCTCCTGCAGAGGCACAGCTGGCTCCAGAGCACACGCCCTCTGGAAACTTCCTGTCTTATTTCTAA 1752
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1753 GTTTTGCAACCTAGGAAGACATTTTTTGAGAGGGATTTAAAAACAAAAATGTAGACACAAATTAAATATACTTT 1826
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1827 TGTTCTAAACTACTATAGAAAAAGAAGTTTTGAATTTTTTTTTTTTTTTTTTTGCTAAGATTTTCCTATAATTG 1900
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1901 GGAAGTTTGAGGCATCTGATGCTCTGCTGTGGATGGGGCTTAGTGGTATTTACCCGGTACATGAAATTGCCTTC 1974
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1975 ATTTTCCTCTGACTTCTCCCTAGGGAAACAGAAGGAATGAACGGGTCCACATCCCACCTTTGCAAAAATCCCAT 2048
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2049 GAGCTTTCCCTTGCCAGAGAGATGAGCTCTCTGGGGGGACAGCTGATTGGCTCTTCCTCTGAAAGGATGCCACC 2122
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2123 ATAATCTGTTTTACTTTCAGGTGTTCGTTGGGCTGCTTTGGGGGGGGGGTAAAAGTTCTCTGTTTACTGGTATG 2196
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2197 ATTTATGTAAGACAAGACTGAAAGGGGAATCAAGAAGGCTTGCTTGGTGGGAAAGCTATTTCCCAAAACTTTGG 2270
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2271 TTGGTGACATTTTGTTAGCCAGCCTGACTGTAATTCTAGGCTCTAACAGTGCCAAAAATCCTACATAGTTACTG 2344
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2345 ACAAGTGTGTGATCTCTTTGCAGTCACACCACCTGCTGCCTGAAAAGCAGACTCTTCCAAGTAATGGCAGAGGC 2418
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2419 AGAAAGCGGCCATGCATGCCATGTGTGGCCACTGTCCCTACTTCCTCCCGTCCCTTTCACAACTTGCTCTGTTC 2492
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2493 AGCCTTAATATTTCAAAGGCCTACAGTATAATAGGAGCTGAGCGTCTGGATCAAGTGTATCTCTTCTTTCATCC 2566
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2567 TTTCGGAAGAATGGAAGTTTCAGCACAACCCCGACATGTATATAAGCTGAAGGCAGGAAAATGTGGCCTGACAC 2640
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2641 TTCACATCCGTGCTTGACTTAATTGAACGACAGGGAAACACAGGGCTGCATCTGTGTTTTGCCCTCGACCATCT 2714
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2715 TATGTCTTAAGTGGAGCTATGAAATGTCACCCTGATACTCAGGAATTCTCATTGAGAGAAGGTGTGGGATACTT 2788
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2789 TTGTTCTAACTTGTTTAAATTCTTAATAAAGGTGTTTACACTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2862
Query 1102 --------------------- 1101
Sbjct 2863 AAAAAAAAAAAAAAAAAAAAA 2883
