Construct: ORF ccsbBroadEn_04772

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010671.1_s300c1, BRDN0000397179
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LRRC28 (123355)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 123355 LRRC28 leucine rich repeat contain... NM_001321675.2 100% 100%
2 human 123355 LRRC28 leucine rich repeat contain... NM_144598.5 100% 100%
3 human 123355 LRRC28 leucine rich repeat contain... XM_011521218.2 100% 100%
4 human 123355 LRRC28 leucine rich repeat contain... NM_001321676.2 94.9% 90.6% (many diffs)
5 human 123355 LRRC28 leucine rich repeat contain... XM_011521220.2 93.4% 93.4% 1029_1030ins72
6 human 123355 LRRC28 leucine rich repeat contain... NM_001284400.3 85% 80.4% 870_871ins160;936_937insTGAGT
7 human 123355 LRRC28 leucine rich repeat contain... NM_001321677.2 81.1% 81.1% 384_385ins207
8 human 123355 LRRC28 leucine rich repeat contain... XR_001751086.2 72.3% 1_153del;848_916del;1324_1522del
9 human 123355 LRRC28 leucine rich repeat contain... NM_001321678.2 71.2% 65.5% (many diffs)
10 human 123355 LRRC28 leucine rich repeat contain... XM_011521221.3 70.2% 66.7% (many diffs)
11 human 123355 LRRC28 leucine rich repeat contain... XM_006720389.4 66.5% 64.3% (many diffs)
12 human 123355 LRRC28 leucine rich repeat contain... XM_017021914.1 66.5% 64.3% (many diffs)
13 human 123355 LRRC28 leucine rich repeat contain... NM_001321679.2 58% 58% 0_1ins462
14 human 123355 LRRC28 leucine rich repeat contain... NM_001321680.2 58% 58% 0_1ins462
15 human 123355 LRRC28 leucine rich repeat contain... NR_135758.2 17.9% (many diffs)
16 human 123355 LRRC28 leucine rich repeat contain... NR_135753.2 17.1% 1_121del;503_504ins95;1128_5757del
17 human 123355 LRRC28 leucine rich repeat contain... NR_135757.2 16.9% (many diffs)
18 human 123355 LRRC28 leucine rich repeat contain... NR_135756.2 16.4% (many diffs)
19 human 123355 LRRC28 leucine rich repeat contain... NR_135754.2 15.8% (many diffs)
20 human 123355 LRRC28 leucine rich repeat contain... NR_135755.2 15.3% (many diffs)
21 human 123355 LRRC28 leucine rich repeat contain... NR_135759.2 13.5% (many diffs)
22 mouse 67867 Lrrc28 leucine rich repeat contain... NM_175124.5 88% 89.9% (many diffs)
23 mouse 67867 Lrrc28 leucine rich repeat contain... XM_006541130.3 70.3% 73.2% (many diffs)
24 mouse 67867 Lrrc28 leucine rich repeat contain... XM_006541133.2 59.1% 55.4% (many diffs)
25 mouse 67867 Lrrc28 leucine rich repeat contain... NM_027413.1 36.5% 36.5% (many diffs)
26 mouse 67867 Lrrc28 leucine rich repeat contain... NR_028143.1 29.5% (many diffs)
27 mouse 67867 Lrrc28 leucine rich repeat contain... NR_028144.1 28.1% (many diffs)
28 mouse 67867 Lrrc28 leucine rich repeat contain... XR_391360.3 27.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1167
ORF length:
1101
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GTCCGAACTT TGTAAGACGA TCTCTGTGGC AAGGCTAGAA AAGCACAAGA
121ATTTGTTCTT AAATTATAGG AATCTGCACC ATTTTCCATT GGAGTTACTG AAAGATGAGG
181GACTGCAGTA CTTGGAGAGA CTCTATATGA AAAGGAACTC CCTGACATCC TTGCCAGAAA
241ACCTTGCTCA GAAGCTTCCA AACCTTGTGG AACTATACCT GCACTCAAAT AACATAGTTG
301TGGTTCCGGA AGCCATTGGG TCTCTTGTAA AACTCCAATG TCTGGATCTT AGTGACAATG
361CCTTAGAAAT TGTTTGCCCA GAAATTGGTC GTCTGAGAGC TTTACGTCAT CTTCGATTAG
421CTAATAACCA ACTGCAATTC CTACCTCCAG AGGTTGGCGA TTTGAAGGAG CTGCAGACAC
481TAGACATTTC TACCAATCGT TTGCTAACTT TACCCGAGAG GCTTCACATG TGCCTTTCTC
541TGCAGTACCT CACTGTGGAC CGAAATCGTC TATGGTATGT GCCGCGCCAT CTCTGCCAGC
601TGCCCAGCCT CAATGAGCTC TCCATGGCTG GAAACCGTCT TGCATTTTTG CCACTTGATT
661TAGGTCGATC TCGAGAACTA CAGTATGTAT ACGTGGATAA CAACATTCAC CTGAAAGGCT
721TGCCATCTTA TCTGTACAAT AAAGTCATCG GGTGCAGTGG CTGTGGTGCT CCCATTCAAG
781TTTCCGAGGT GAAGCTGCTT TCCTTTTCAT CAGGGCAGCG AACCGTTTTC CTCCCAGCTG
841AGGTGAAGGC CATAGGGACG GAGCATGATC ACGTCCTCCC TCTGCAGGAA TTGGCTATGA
901GAGGGCTGTA TCATACCTAC CACAGCTTGC TGAAAGATTT GAACTTTCTG TCTCCAATCT
961CATTACCCAG AAGTCTCCTA GAGCTGCTGC ACTGCCCTCT GGGGCACTGT CATCGGTGTA
1021GTGAGCCTAT GTTTACCATC GTCTACCCCA AGCTCTTTCC CTTGAGAGAG ACGCCAATGG
1081CAGGGCTGCA CCAGTGGAAG ACAACTGTTA GTTTTGTGGC TTACTGCTGC TCCACCCAGT
1141GTCTGCAGAC TTTTGACCTG CTGAGTTGCC CAACTTTCTT GTACAAAGTt ggcattataa
1201gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)

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