Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_04855
- Subject:
- XR_001738616.1
- Aligned Length:
- 1629
- Identities:
- 971
- Gaps:
- 605
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTTAGCCCAGGGGCCGGCGCCTCCCCGCCTCGCGCGGACTGTCTCGTGCGGGCAGCTGCGGGCGCACCTGGACC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTCGCAAGGCCCGGGCGGCGCCGATCCCCGCGGGACGCGCTGCGCTCGGGGCCTCCCGCCTCCCCCCCTGCCCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGCCGCCCCCCGGCCGCGCGGCGCCCCGCACCCTGCAGGGACGGCTGCCGCATCGCTGGGACAAACTCGGCAGC 222
Query 1 -------------------------------------------------ATGGTGCCCAGCTCTCCGCGCGCGC 25
|||||||||||||||||||||||||
Sbjct 223 GGAGGCAAAGTTATTTCCCCTCCCAGGCAGCGGGATTCCGACTGGCAAGATGGTGCCCAGCTCTCCGCGCGCGC 296
Query 26 TCTTCCTTCTGCTCCTGATCCTCGCCTGCCCCGAGCCGCGGGCTTCCCAGAACTGTCTCAGCAAACAGCAGCTC 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCTTCCTTCTGCTCCTGATCCTCGCCTGCCCCGAGCCGCGGGCTTCCCAGAACTGTCTCAGCAAACAGCAGCTC 370
Query 100 CTCTCGGCCATCCGCCAGCTGCAGCAGCTGCTGAAGGGCCAGGAGACACGCTTCGCCGAGGGCATCCGCCACAT 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CTCTCGGCCATCCGCCAGCTGCAGCAGCTGCTGAAGGGCCAGGAGACACGCTTCGCCGAGGGCATCCGCCACAT 444
Query 174 GAAGAGCCGGCTGGCCGCGCTGCAGAACTCTGTGGGCAGGGTGGGCCCAGATGCCCTTCCAGTTTCCTGCCCGG 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GAAGAGCCGGCTGGCCGCGCTGCAGAACTCTGTGGGCAGGGTGGGCCCAGATGCCCTTCCAGTTTCCTGCCCGG 518
Query 248 CTCTGAACACCCCCGCAGACGGCAGAAAGTTTGGAAGCAAGTACTTAGTGGATCACGAAGTCCATTTTACCTGC 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CTCTGAACACCCCCGCAGACGGCAGAAAGTTTGGAAGCAAGTACTTAGTGGATCACGAAGTCCATTTTACCTGC 592
Query 322 AACCCTGGGTTCCGGCTGGTCGGGCCCAGCAGCGTGGTGTGTCTTCCCAATGGCACCTGGACAGGGGAGCAGCC 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AACCCTGGGTTCCGGCTGGTCGGGCCCAGCAGCGTGGTGTGTCTTCCCAATGGCACCTGGACAGGGGAGCAGCC 666
Query 396 CCACTGTAGAGGTATCAGTGAATGCTCCAGCCAGCCTTGTCAAAATGGTGGTACATGTGTAGAAGGAGTCAACC 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CCACTGTAGAGGTATCAGTGAATGCTCCAGCCAGCCTTGTCAAAATGGTGGTACATGTGTAGAAGGAGTCAACC 740
Query 470 AGTACAGATGCATTTGTCCTCCAGGAAGGACTGGGAACCGCTGTCAGCATCAGGCCCAGACT------------ 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AGTACAGATGCATTTGTCCTCCAGGAAGGACTGGGAACCGCTGTCAGCATCAGGCCCAGACTGCCGCCCCCGAG 814
Query 532 -------------------------------------------------------------------------- 531
Sbjct 815 GGCAGCGTGGCCGGCGACTCCGCCTTCAGCCGCGCGCCGCGCTGTGCGCAGGTGGAGCGGGCTCAGCACTGCAG 888
Query 532 ----------------------------------------------------GACGTGAACGAGTGTGAGCTCT 553
||||||||||||||||||||||
Sbjct 889 CTGCGAGGCCGGATTCCACCTGAGCGGCGCCGCCGGCGACAGCGTCTGCCAGGACGTGAACGAGTGTGAGCTCT 962
Query 554 ACGGGCAGGAGGGGCGCCCCCGGCTCTGCATGCACGCCTGCGTGAACACCCCGGGCTCTTACCGTTGCACCTGC 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 ACGGGCAGGAGGGGCGCCCCCGGCTCTGCATGCACGCCTGCGTGAACACCCCGGGCTCTTACCGTTGCACCTGC 1036
Query 628 CCCGGTGGATACCGAACTCTGGCTGACGGGAAGAGCTGTGAGGATGTGGATGAATGTGTGGGCCTGCAGCCGGT 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CCCGGTGGATACCGAACTCTGGCTGACGGGAAGAGCTGTGAGGATGTGGATGAATGTGTGGGCCTGCAGCCGGT 1110
Query 702 GTGCCCCCAGGGGACCACATGCATCAACACCGGTGGAAGCTTCCAGTGTGTCAGCCCTGAGTGCCCCGAGGGCA 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GTGCCCCCAGGGGACCACATGCATCAACACCGGTGGAAGCTTCCAGTGTGTCAGCCCTGAGTGCCCCGAGGGCA 1184
Query 776 GCGGCAATGTGAGCTACGTGAAGACGTCTCCATTCCAGTGTGAGCGGAACCCCTGCCCCATGGACAGCAGGCCC 849
|||||||||||||||||||||||||||||||||| || ||||| ||| ||
Sbjct 1185 GCGGCAATGTGAGCTACGTGAAGACGTCTCCATT----TG---GCGGA-------------GGA-AG------- 1230
Query 850 TGCCGCCATCTGCCCAAGACCATCTCCTTCCATT-----ACCTCTCT-----CTGCCTTCCAAC--CTGAAGAC 911
|||| .|..|.||||.||| ||| ||.| .|||.|.||||| |||.|||
Sbjct 1231 ---------------AAGA-AAAATACTTCTATTTGAGAACC-CTATTGAGGTTGCATGCCAACTTCTGGAGA- 1286
Query 912 GCCCATCACGCTCTTCCG-CATGGCCACAGCCTCTGCCCCCGGCCGAGCTGGG---------CCCAACAGCCTG 975
|.|||.| ||.|...|.| .||..||.| ||.||| .|||
Sbjct 1287 -----------TGTTCAGACAAGAAAAAA---------------AGAAATGTGAAAGAGTTTCCTAAC--TCTG 1332
Query 976 CGGTTTGGGATCGTGGGTGGGAACAGC-CGCGGCCACTTTGTGATGC-AGCGTTCAG-ACCGGCAGACTGGGGA 1046
..||| || ||.|.||| |.|| ||.||..|| ||| |||.|..||||
Sbjct 1333 TTGTT--------------------GCACGTGCCCA-------AGGCAAGGGTGAAGAACC--CAGGCATGGGA 1377
Query 1047 TCTGATCCTTGTGCAGAACCTGGAGGGGCCTCAGACGCTGGAGGTGGACGTC------GACATGTCGGAATACC 1114
.||.|| |||.||||.||| ||| ||| ||.|.| |||.|...|.|||..|
Sbjct 1378 GCTAAT------------CCTAGAGGAGCC-CAG--GCT-------GATGACAGCAATGACTTAAAGCAATTTC 1429
Query 1115 TGGACCGCTCC--------TTCCAG--GCCAACCACGTGTCCAAGGTCACCATCTTTGTATCCCCCTATGACTT 1178
|| | ||.||| ..|||||| ||.|||| .|||| |||||.
Sbjct 1430 TG--------CATAAAAATTTTCAGAACACAACCA-----CCCAGGT-----ACTTT------CCCTAG----- 1474
Query 1179 C 1179
Sbjct 1475 - 1474
