Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_05019
- Subject:
- XR_001736987.1
- Aligned Length:
- 4784
- Identities:
- 1315
- Gaps:
- 3468
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGCGGGGCCGGGAGCTGCGAGGAGCCCCCCAGACGTCGCCGAGCGCGAGGGCGGGCGTGCTCGGAGTGGTCGCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGTCAGCCGCCGCCCCTCAGTCTCCGCACTTGCAGGTCCCCTCCCTCTCCGCCGGGACGCGGGAGAGCCCGGCT 148
Query 1 -----------------ATGCGAAACTGGCTGGTGCTGCTGTGCCCGTGTGTGCTCGGGGCCGCGCTGCACCTC 57
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CGCGGCGGGGGCGGCCAATGCGAAACTGGCTGGTGCTGCTGTGCCCGTGTGTGCTCGGGGCCGCGCTGCACCTC 222
Query 58 TGGCTGCGGCTGCGCTCCCCGCCGCCCGCCTGCGCCTCCGGGGCCGGCCCTG---------------------- 109
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TGGCTGCGGCTGCGCTCCCCGCCGCCCGCCTGCGCCTCCGGGGCCGGCCCTGCAGGTGGAGTCTCACTCTTGTT 296
Query 110 -------------------------------------------------------------------------- 109
Sbjct 297 GCCCAGGCTGGAGTGCAATGGCGCGGTCTCGGCTCACCCCAACCTCCACCTCCCGGGTTCAAGAGATTCTCCTG 370
Query 110 ---------------------------CAGATCAGTTGGCCTTATTTCCTCAGTGGAAATCTACTCACTATGAT 156
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CCTCAGCCTCCCAAGTAGCTGGGATAACAGATCAGTTGGCCTTATTTCCTCAGTGGAAATCTACTCACTATGAT 444
Query 157 GTGGTAGTTGGCGTGTTGTCAGCTCGCAATAACCATGAACTTCGAAACGTGATAAGAAGCACCTGGATGAGACA 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GTGGTAGTTGGCGTGTTGTCAGCTCGCAATAACCATGAACTTCGAAACGTGATAAGAAGCACCTGGATGAGACA 518
Query 231 TTTGCTACAGCATCCCACATTAAGTCAACGTGTGCTTGTGAAGTTCATAATAGGTGCTCATGGCTGTGAAGTGC 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TTTGCTACAGCATCCCACATTAAGTCAACGTGTGCTTGTGAAGTTCATAATAGGTGCTCATGGCTGTGAAGTGC 592
Query 305 CTGTGGAAGACAGGGAAGATCCTTATTCCTGTAAACTACTCAACATCACAAATCCAGTTTTGAATCAGGAAATT 378
||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CTGTGGAAGACAGGGAGGATCCTTATTCCTGTAAACTACTCAACATCACAAATCCAGTTTTGAATCAGGAAATT 666
Query 379 GAAGCGTTCAGTCTGTCCGAAGACACTTCATCGGGGCTGCCTGAGGATCGAGTTGTCAGCGTGAGTTTCCGAGT 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GAAGCGTTCAGTCTGTCCGAAGACACTTCATCGGGGCTGCCTGAGGATCGAGTTGTCAGCGTGAGTTTCCGAGT 740
Query 453 TCTCTACCCCATCGTTATTACCAGTCTTGGAGTGTTCTACGATGCCAATGATGTGGGTTTCCAGAGGAACATCA 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TCTCTACCCCATCGTTATTACCAGTCTTGGAGTGTTCTACGATGCCAATGATGTGGGTTTCCAGAGGAACATCA 814
Query 527 CTGTCAAACTTTATCAGGCAGAACAAGAGGAGGCCCTCTTCATTGCTCGCTTCAGTCCTCCAAGCTGTGGTGTG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CTGTCAAACTTTATCAGGCAGAACAAGAGGAGGCCCTCTTCATTGCTCGCTTCAGTCCTCCAAGCTGTGGTGTG 888
Query 601 CAGGTGAACAAGCTGTGGTACAAGCCCGTGGAACAATTCATCTTACCAGAGAGCTTTGAAGGTACAATCGTGTG 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CAGGTGAACAAGCTGTGGTACAAGCCCGTGGAACAATTCATCTTACCAGAGAGCTTTGAAGGTACAATCGTGTG 962
Query 675 GGAGAGCCAAGACCTCCACGGCCTTGTGTCAAGAAATCTCCACAAAGTGACAGTGAATGATGGAGGGGGAGTTC 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GGAGAGCCAAGACCTCCACGGCCTTGTGTCAAGAAATCTCCACAAAGTGACAGTGAATGATGGAGGGGGAGTTC 1036
Query 749 TCAGAGTCATTACAGCTGGGGAGGGTGCATTGCCTCATGAATTCTTGGAAGGTGTGGAGGGAGTTGCAGGTGGT 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TCAGAGTCATTACAGCTGGGGAGGGTGCATTGCCTCATGAATTCTTGGAAGGTGTGGAGGGAGTTGCAGGTGGT 1110
Query 823 TTTATATATACTATTCAGGAAGGTGATGCTCTCTTACACAACCTTCATTCTCGCCCTCAAAGACTTATTGATCA 896
||||||||||||||||||
Sbjct 1111 TTTATATATACTATTCAG-------------------------------------------------------- 1128
Query 897 TATAAGGAATCTCCATGAGGAAGATGCCTTACTGAAGGAGGAAAGCAGCATCTATGATGATATTGTTTTTGTGG 970
Sbjct 1129 -------------------------------------------------------------------------- 1128
Query 971 ATGTTGTCGACACTTATCGTAATGTTCCTGCAAAATTATTGAACTTCTATAGATGGACTGTGGAAACAACGAGC 1044
||||||||||||||||||||
Sbjct 1129 ------------------------------------------------------GGACTGTGGAAACAACGAGC 1148
Query 1045 TTCAATTTGTTGCTGAAGACAGATGATGACTGTTACATAGACCTCGAAGCTGTATTTAATAGGATTGTCCAAAA 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 TTCAATTTGTTGCTGAAGACAGATGATGACTGTTACATAGACCTCGAAGCTGTATTTAATAGGATTGTCCAAAA 1222
Query 1119 GAATCTGGATGGGCCTAATTTTTGGTGGGGAAATTTCAGACTGAATTGGGCAGTTGACCGAACCGGAAAGTGGC 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 GAATCTGGATGGGCCTAATTTTTGGTGGGGAAATTTCAGACTGAATTGGGCAGTTGACCGAACCGGAAAGTGGC 1296
Query 1193 AGGAGTTGGAGTACCCGAGCCCCGCTTACCCTGCCTTTGCATGTGGGTCAGGATATGTGATCTCCAAGGACATC 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 AGGAGTTGGAGTACCCGAGCCCCGCTTACCCTGCCTTTGCATGTGGGTCAGGATATGTGATCTCCAAGGACATC 1370
Query 1267 GTCAAGTGGCTGGCAAGCAACTCGGGGAGGTTAAAGACCTATCAGGGTGAAGATGTAAGCATGGGCATCTGGAT 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 GTCAAGTGGCTGGCAAGCAACTCGGGGAGGTTAAAGACCTATCAGGGTGAAGATGTAAGCATGGGCATCTGGAT 1444
Query 1341 GGCTGCCATAGGACCTAAAAGATACCAGGACAGTCTGTGGCTGTGTGAGAAGACCTGTGAGACAGGAATGCTGT 1414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 GGCTGCCATAGGACCTAAAAGATACCAGGACAGTCTGTGGCTGTGTGAGAAGACCTGTGAGACAGGAATGCTGT 1518
Query 1415 CTTCTCCTCAGTATTCTCCGTGGGAACTGACGGAACTGTGGAAACTGAAGGAACGGTGCGGTGATCCTTGTCGA 1488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1519 CTTCTCCTCAGTATTCTCCGTGGGAACTGACGGAACTGTGGAAACTGAAGGAACGGTGCGGTGATCCTTGTCGA 1592
Query 1489 TGTCAAGCAAGA-------------------------------------------------------------- 1500
||||||||||||
Sbjct 1593 TGTCAAGCAAGATAACAGGGACTTGAATTAGCAGAGTCTAAAATCAGGGCAGGCAAACGATAATCTGAGTGCAA 1666
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 1667 GTCTGAGGAGTCCCAGGGTTTAGCAGTAGACTGTATGGTCTTTCAAGAGAGTTCCAGACTGGCACTTTCACCCA 1740
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 1741 GAACCAATGCGGTGTTTCTTAATGTTTGCACAAATTTCCTTAAAAATCAACTTGTACTGTAGCATAAGAAAAGT 1814
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 1815 TTTTATTTATCTATTGGAAGATTATCAGAAAAATACCAAGTTATTTTATAAAAGAAAAAATATTTCTAAATCCT 1888
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 1889 GATGCATTGTGGCTAATTAGTAATTCACCATTACCTATAGTTTTTGGTTAAAACTTGGCCTAGTTCAGAAATCT 1962
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 1963 GTAGTAGTAACTGAGAGTTTGAATTTCAACCTGGATTGCAGGATAGCTCTGTAGAGCTAATTAGGATAATTATC 2036
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2037 AGACAAAAAGGAACTCACAGGAATGCTGTGTGATCATGTGATCACATATTTGAGCAGTGGTCACTTATACCAAA 2110
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2111 GTTTGGGGTTTCTGGAAATAATGTCAGATTTTGTGGATCTCTGAAGTGGGCAACTTGAACTAACTTGAAGAGGA 2184
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2185 ACCAATATGATTCTCAGTTCTGAACCTTGGTTTTAAAGAAGTTCATTTATATGGTAGACTAATACCCAAATTTT 2258
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2259 CTTTCTGCCATCTAACATAAATCCTGAAGGTCACAGTTTAGTACTCATAGTTTTTAAATGCTAAAGTTGTGTGA 2332
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2333 GTATGAATAAAAGCAAATACCTCTCAGGGTTTTAGTGCCATCGGGAAGGATATTTCTAAATTTTGTTGACATTT 2406
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2407 TGAAAGAATTAGTTTTGCTTTCCTCCTATCATTGCCTAATGTTTACCTAATATGAGTACATTTCAATCAAAGCT 2480
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2481 GGTTATCACAGAAGAAGATATACTCAGCTTAGGTATAATTGTAGGGAAAAGCATGTGATTAATTTAAGTACTCT 2554
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2555 TAGAAATAGTGCAACTGAGAAGACAGATAATAGCATATTGTTATACATAGTAGAGGATGTCTCCCCAAGTTTAA 2628
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2629 GGGACATTTCCCAAAATGACCAACCAAATCATTTCTAGTAACCCTTTAAAATAGTAGTTTCAATAGAGAATTCC 2702
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2703 ATTAAAACTAGTCTTATGACAGATATTAACTGTGTTCAGATTTTATTAGGCTAGCTAGTTTCTTTCTATTTAAT 2776
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2777 ATTTAAATCTTATCATGAAATGCAGTGATGAGCTGTAAAAATAAATATGAAATAAGATCAGAAAATCATTAGTA 2850
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2851 GGTTCAAAGCCTTTATTATTGCTATTATGTATAAGCCTAGAAATGGTCACTTCCCAACAAAAAATACATCCCTT 2924
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2925 GTTATACTTAGGACAAGTTGTAAACCCCCTTTGTTTTGACAGTAGAATTGTTCCAGTGAATCATTTATTTCCGG 2998
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2999 TGAACCCCAGACACGATAAGCAGTGTGGTCTTTAAATTTTATTAGTTGGTTGTCACCATCGCACTAATAGACAA 3072
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3073 TCTCCATTTTCCACAGAATAAAACTGTAATGACTTTAGGTCATTTTCCAGCTCGATTTCTCTGCCCGGCTTCTA 3146
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3147 AAATTAGAACGAAGGTGGGGAAGGATGTGATTAAGACAGATCCGATAAAGCATGCTACACATACTCTTCCCCCA 3220
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3221 CCCCGTCCCCAGGCAGTAGCTTACCCTTAAAATCAAACAAACAGACCCATGGTCTCCATTTAGAATCAAACTGT 3294
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3295 TGCTATCTAGAGACAGTTTAATGTCATAATACGAGGACTAAGCTTGACTTTGACTTTGTATTTTGCTGGGCAAC 3368
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3369 TTACTTTGGGACTTTCATAGGACAACAGAAGGTCTGACACAGGAACTTTGAGAAGACGTGACAGCAATCCCTTC 3442
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3443 ACCTTTTGAATTGTCATGGAGCCTATCAAAAGACAAGAAAAGTCCATTCGTTCTCTCAAATGACAGTTACCTGT 3516
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3517 AAAACTAGCTCATGTGATGAGACCACAGTATCATTGCAATGATAGCTGTATCTGTCTTTTTTTTTTTTTTTTTT 3590
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3591 TTGAGACTGACTTACTTACTTACTTAAGTAAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAATGGTGTAATCTC 3664
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3665 GGCTCACTGCAACCTCCGCTTCCCGGGTTCAAACAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGTGCCCATC 3738
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3739 ACCACACCCAGCTAACTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTC 3812
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3813 CTGACCTCGTGATCCGCCCGCCCTGGCCCCCCAAAGTGCTGGGATTACAAGCATGAGCCCAGCGCCTGGCTGTA 3886
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3887 TCTTTCATTTTACCCAAGTCACTTTACCCAAGTAAGTAATTAGGGGAAAGCCTGAGTCTTGTACCACCTGTTCA 3960
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3961 TTTGGGGAACTGTGGGAAACGGAGCCAACGGACCTAAGTGCCCTTTGACAGTGAGTTTCATACCATTTCAGTAG 4034
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 4035 TGTATTTCTTTCTTAATCTGAATAAACCAGAATGATACTCTCAGCACAGAAGAATAAAGGGAGCGAGTCATTAA 4108
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 4109 CGTTTTCTTTTTAAACCTTTATGATGACTTCCTTATGAATTACTGAACGAACACTGGAATGGGACTCAGGTATC 4182
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 4183 CTGAGGACATCTCTCAACTCTGGCCTTAGTTCCCCCTCTGTAAAATTAGGGTGCCAACTAAATGATCTACAAGG 4256
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 4257 TCCCTTCCAGCGCCGCCATTCTGTAATTACATCATGTGTAACTGTATTAAACATACACAAGTGACTGCCAGGCA 4330
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 4331 TGGGAATGTAACTTCCGAGTAAATGCTTTGGTTTGTTCAGAATACACTATGAACTTCTTTCCAAAGACGGGTTG 4404
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 4405 TGGTAAATAGTGGATATTTTGATTATAAGAAATAGAGTTTCCTTGAAGCTTTAGCTGGAGATACAGCAATAGTG 4478
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 4479 TGGTGTTCCTACAAATATCACAGTGTATTCAAACATATTTTTCTATCAAAAATCATTTTTGTAAAAGCTGTGTG 4552
Query 1501 ------------------------------------------------ 1500
Sbjct 4553 TTTTTATCCAACTTGTGATAATAAATGTTCTTTATTTTAGAATAAAAA 4600
