Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_05019
- Subject:
- XR_001736990.1
- Aligned Length:
- 4667
- Identities:
- 1315
- Gaps:
- 3351
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CGGAGGAGCGGGGCCGGGAGCTGCGAGGAGCCCCCCAGACGTCGCCGAGCGCGAGGGCGGGCGTGCTCGGAGTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTCGCTCGTCAGCCGCCGCCCCTCAGTCTCCGCACTTGCAGGTCCCCTCCCTCTCCGCCGGGACGCGGGAGAGC 148
Query 1 -----------------------ATGCGAAACTGGCTGGTGCTGCTGTGCCCGTGTGTGCTCGGGGCCGCGCTG 51
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CCGGCTCGCGGCGGGGGCGGCCAATGCGAAACTGGCTGGTGCTGCTGTGCCCGTGTGTGCTCGGGGCCGCGCTG 222
Query 52 CACCTCTGGCTGCGGCTGCGCTCCCCGCCGCCCGCCTGCGCCTCCGGGGCCGGCCCTGCAGATCAGTTGGCCTT 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CACCTCTGGCTGCGGCTGCGCTCCCCGCCGCCCGCCTGCGCCTCCGGGGCCGGCCCTGCAGATCAGTTGGCCTT 296
Query 126 ATTTCCTCAGTGGAAATCTACTCACTATGATGTGGTAGTTGGCGTGTTGTCAGCTCGCAATAACCATGAACTTC 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ATTTCCTCAGTGGAAATCTACTCACTATGATGTGGTAGTTGGCGTGTTGTCAGCTCGCAATAACCATGAACTTC 370
Query 200 GAAACGTGATAAGAAGCACCTGGATGAGACATTTGCTACAGCATCCCACATTAAGTCAACGTGTGCTTGTGAAG 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GAAACGTGATAAGAAGCACCTGGATGAGACATTTGCTACAGCATCCCACATTAAGTCAACGTGTGCTTGTGAAG 444
Query 274 TTCATAATAGGTGCTCATGGCTGTGAAGTGCCTGTGGAAGACAGGGAAGATCCTTATTCCTGTAAACTACTCAA 347
|||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||
Sbjct 445 TTCATAATAGGTGCTCATGGCTGTGAAGTGCCTGTGGAAGACAGGGAGGATCCTTATTCCTGTAAACTACTCAA 518
Query 348 CATCACAAATCCAGTTTTGAATCAGGAAATTGAAGCGTTCAGTCTGTCCGAAGACACTTCATCGGGGCTGCCTG 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CATCACAAATCCAGTTTTGAATCAGGAAATTGAAGCGTTCAGTCTGTCCGAAGACACTTCATCGGGGCTGCCTG 592
Query 422 AGGATCGAGTTGTCAGCGTGAGTTTCCGAGTTCTCTACCCCATCGTTATTACCAGTCTTGGAGTGTTCTACGAT 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AGGATCGAGTTGTCAGCGTGAGTTTCCGAGTTCTCTACCCCATCGTTATTACCAGTCTTGGAGTGTTCTACGAT 666
Query 496 GCCAATGATGTGGGTTTCCAGAGGAACATCACTGTCAAACTTTATCAGGCAGAACAAGAGGAGGCCCTCTTCAT 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GCCAATGATGTGGGTTTCCAGAGGAACATCACTGTCAAACTTTATCAGGCAGAACAAGAGGAGGCCCTCTTCAT 740
Query 570 TGCTCGCTTCAGTCCTCCAAGCTGTGGTGTGCAGGTGAACAAGCTGTGGTACAAGCCCGTGGAACAATTCATCT 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TGCTCGCTTCAGTCCTCCAAGCTGTGGTGTGCAGGTGAACAAGCTGTGGTACAAGCCCGTGGAACAATTCATCT 814
Query 644 TACCAGAGAGCTTTGAAGGTACAATCGTGTGGGAGAGCCAAGACCTCCACGGCCTTGTGTCAAGAAATCTCCAC 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TACCAGAGAGCTTTGAAGGTACAATCGTGTGGGAGAGCCAAGACCTCCACGGCCTTGTGTCAAGAAATCTCCAC 888
Query 718 AAAGTGACAGTGAATGATGGAGGGGGAGTTCTCAGAGTCATTACAGCTGGGGAGGGTGCATTGCCTCATGAATT 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AAAGTGACAGTGAATGATGGAGGGGGAGTTCTCAGAGTCATTACAGCTGGGGAGGGTGCATTGCCTCATGAATT 962
Query 792 CTTGGAAGGTGTGGAGGGAGTTGCAGGTGGTTTTATATATACTATTCAGGAAGGTGATGCTCTCTTACACAACC 865
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CTTGGAAGGTGTGGAGGGAGTTGCAGGTGGTTTTATATATACTATTCAG------------------------- 1011
Query 866 TTCATTCTCGCCCTCAAAGACTTATTGATCATATAAGGAATCTCCATGAGGAAGATGCCTTACTGAAGGAGGAA 939
Sbjct 1012 -------------------------------------------------------------------------- 1011
Query 940 AGCAGCATCTATGATGATATTGTTTTTGTGGATGTTGTCGACACTTATCGTAATGTTCCTGCAAAATTATTGAA 1013
Sbjct 1012 -------------------------------------------------------------------------- 1011
Query 1014 CTTCTATAGATGGACTGTGGAAACAACGAGCTTCAATTTGTTGCTGAAGACAGATGATGACTGTTACATAGACC 1087
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 -----------GGACTGTGGAAACAACGAGCTTCAATTTGTTGCTGAAGACAGATGATGACTGTTACATAGACC 1074
Query 1088 TCGAAGCTGTATTTAATAGGATTGTCCAAAAGAATCTGGATGGGCCTAATTTTTGGTGGGGAAATTTCAGACTG 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 TCGAAGCTGTATTTAATAGGATTGTCCAAAAGAATCTGGATGGGCCTAATTTTTGGTGGGGAAATTTCAGACTG 1148
Query 1162 AATTGGGCAGTTGACCGAACCGGAAAGTGGCAGGAGTTGGAGTACCCGAGCCCCGCTTACCCTGCCTTTGCATG 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 AATTGGGCAGTTGACCGAACCGGAAAGTGGCAGGAGTTGGAGTACCCGAGCCCCGCTTACCCTGCCTTTGCATG 1222
Query 1236 TGGGTCAGGATATGTGATCTCCAAGGACATCGTCAAGTGGCTGGCAAGCAACTCGGGGAGGTTAAAGACCTATC 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 TGGGTCAGGATATGTGATCTCCAAGGACATCGTCAAGTGGCTGGCAAGCAACTCGGGGAGGTTAAAGACCTATC 1296
Query 1310 AGGGTGAAGATGTAAGCATGGGCATCTGGATGGCTGCCATAGGACCTAAAAGATACCAGGACAGTCTGTGGCTG 1383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 AGGGTGAAGATGTAAGCATGGGCATCTGGATGGCTGCCATAGGACCTAAAAGATACCAGGACAGTCTGTGGCTG 1370
Query 1384 TGTGAGAAGACCTGTGAGACAGGAATGCTGTCTTCTCCTCAGTATTCTCCGTGGGAACTGACGGAACTGTGGAA 1457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 TGTGAGAAGACCTGTGAGACAGGAATGCTGTCTTCTCCTCAGTATTCTCCGTGGGAACTGACGGAACTGTGGAA 1444
Query 1458 ACTGAAGGAACGGTGCGGTGATCCTTGTCGATGTCAAGCAAGA------------------------------- 1500
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 ACTGAAGGAACGGTGCGGTGATCCTTGTCGATGTCAAGCAAGATAACAGGGACTTGAATTAGCAGAGTCTAAAA 1518
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 1519 TCAGGGCAGGCAAACGATAATCTGAGTGCAAGTCTGAGGAGTCCCAGGGTTTAGCAGTAGACTGTATGGTCTTT 1592
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 1593 CAAGAGAGTTCCAGACTGGCACTTTCACCCAGAACCAATGCGGTGTTTCTTAATGTTTGCACAAATTTCCTTAA 1666
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 1667 AAATCAACTTGTACTGTAGCATAAGAAAAGTTTTTATTTATCTATTGGAAGATTATCAGAAAAATACCAAGTTA 1740
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 1741 TTTTATAAAAGAAAAAATATTTCTAAATCCTGATGCATTGTGGCTAATTAGTAATTCACCATTACCTATAGTTT 1814
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 1815 TTGGTTAAAACTTGGCCTAGTTCAGAAATCTGTAGTAGTAACTGAGAGTTTGAATTTCAACCTGGATTGCAGGA 1888
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 1889 TAGCTCTGTAGAGCTAATTAGGATAATTATCAGACAAAAAGGAACTCACAGGAATGCTGTGTGATCATGTGATC 1962
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 1963 ACATATTTGAGCAGTGGTCACTTATACCAAAGTTTGGGGTTTCTGGAAATAATGTCAGATTTTGTGGATCTCTG 2036
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2037 AAGTGGGCAACTTGAACTAACTTGAAGAGGAACCAATATGATTCTCAGTTCTGAACCTTGGTTTTAAAGAAGTT 2110
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2111 CATTTATATGGTAGACTAATACCCAAATTTTCTTTCTGCCATCTAACATAAATCCTGAAGGTCACAGTTTAGTA 2184
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2185 CTCATAGTTTTTAAATGCTAAAGTTGTGTGAGTATGAATAAAAGCAAATACCTCTCAGGGTTTTAGTGCCATCG 2258
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2259 GGAAGGATATTTCTAAATTTTGTTGACATTTTGAAAGAATTAGTTTTGCTTTCCTCCTATCATTGCCTAATGTT 2332
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2333 TACCTAATATGAGTACATTTCAATCAAAGCTGGTTATCACAGAAGAAGATATACTCAGCTTAGGTATAATTGTA 2406
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2407 GGGAAAAGCATGTGATTAATTTAAGTACTCTTAGAAATAGTGCAACTGAGAAGACAGATAATAGCATATTGTTA 2480
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2481 TACATAGTAGAGGATGTCTCCCCAAGTTTAAGGGACATTTCCCAAAATGACCAACCAAATCATTTCTAGTAACC 2554
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2555 CTTTAAAATAGTAGTTTCAATAGAGAATTCCATTAAAACTAGTCTTATGACAGATATTAACTGTGTTCAGATTT 2628
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2629 TATTAGGCTAGCTAGTTTCTTTCTATTTAATATTTAAATCTTATCATGAAATGCAGTGATGAGCTGTAAAAATA 2702
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2703 AATATGAAATAAGATCAGAAAATCATTAGTAGGTTCAAAGCCTTTATTATTGCTATTATGTATAAGCCTAGAAA 2776
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2777 TGGTCACTTCCCAACAAAAAATACATCCCTTGTTATACTTAGGACAAGTTGTAAACCCCCTTTGTTTTGACAGT 2850
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2851 AGAATTGTTCCAGTGAATCATTTATTTCCGGTGAACCCCAGACACGATAAGCAGTGTGGTCTTTAAATTTTATT 2924
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2925 AGTTGGTTGTCACCATCGCACTAATAGACAATCTCCATTTTCCACAGAATAAAACTGTAATGACTTTAGGTCAT 2998
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2999 TTTCCAGCTCGATTTCTCTGCCCGGCTTCTAAAATTAGAACGAAGGTGGGGAAGGATGTGATTAAGACAGATCC 3072
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3073 GATAAAGCATGCTACACATACTCTTCCCCCACCCCGTCCCCAGGCAGTAGCTTACCCTTAAAATCAAACAAACA 3146
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3147 GACCCATGGTCTCCATTTAGAATCAAACTGTTGCTATCTAGAGACAGTTTAATGTCATAATACGAGGACTAAGC 3220
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3221 TTGACTTTGACTTTGTATTTTGCTGGGCAACTTACTTTGGGACTTTCATAGGACAACAGAAGGTCTGACACAGG 3294
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3295 AACTTTGAGAAGACGTGACAGCAATCCCTTCACCTTTTGAATTGTCATGGAGCCTATCAAAAGACAAGAAAAGT 3368
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3369 CCATTCGTTCTCTCAAATGACAGTTACCTGTAAAACTAGCTCATGTGATGAGACCACAGTATCATTGCAATGAT 3442
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3443 AGCTGTATCTGTCTTTTTTTTTTTTTTTTTTTTGAGACTGACTTACTTACTTACTTAAGTAAGTCTTGCTCTGT 3516
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3517 CGCCCAGGCTGGAGTGCAATGGTGTAATCTCGGCTCACTGCAACCTCCGCTTCCCGGGTTCAAACAATTCTCCT 3590
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3591 GCCTCAGCCTCCTGAGTAGCTGGTGCCCATCACCACACCCAGCTAACTTTTGTATTTTTAGTAGAGACGGGGTT 3664
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3665 TCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCGTGATCCGCCCGCCCTGGCCCCCCAAAGTGCTGGG 3738
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3739 ATTACAAGCATGAGCCCAGCGCCTGGCTGTATCTTTCATTTTACCCAAGTCACTTTACCCAAGTAAGTAATTAG 3812
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3813 GGGAAAGCCTGAGTCTTGTACCACCTGTTCATTTGGGGAACTGTGGGAAACGGAGCCAACGGACCTAAGTGCCC 3886
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3887 TTTGACAGTGAGTTTCATACCATTTCAGTAGTGTATTTCTTTCTTAATCTGAATAAACCAGAATGATACTCTCA 3960
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3961 GCACAGAAGAATAAAGGGAGCGAGTCATTAACGTTTTCTTTTTAAACCTTTATGATGACTTCCTTATGAATTAC 4034
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 4035 TGAACGAACACTGGAATGGGACTCAGGTATCCTGAGGACATCTCTCAACTCTGGCCTTAGTTCCCCCTCTGTAA 4108
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 4109 AATTAGGGTGCCAACTAAATGATCTACAAGGTCCCTTCCAGCGCCGCCATTCTGTAATTACATCATGTGTAACT 4182
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 4183 GTATTAAACATACACAAGTGACTGCCAGGCATGGGAATGTAACTTCCGAGTAAATGCTTTGGTTTGTTCAGAAT 4256
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 4257 ACACTATGAACTTCTTTCCAAAGACGGGTTGTGGTAAATAGTGGATATTTTGATTATAAGAAATAGAGTTTCCT 4330
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 4331 TGAAGCTTTAGCTGGAGATACAGCAATAGTGTGGTGTTCCTACAAATATCACAGTGTATTCAAACATATTTTTC 4404
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 4405 TATCAAAAATCATTTTTGTAAAAGCTGTGTGTTTTTATCCAACTTGTGATAATAAATGTTCTTTATTTTAGAAT 4478
Query 1501 ----- 1500
Sbjct 4479 AAAAA 4483
