Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_05195
- Subject:
- NR_135621.2
- Aligned Length:
- 3971
- Identities:
- 1030
- Gaps:
- 2941
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCTTTTCTTTAGCCGGGTCCCGCTAACTCGGCTACGGTGTATCTGCGTCTTTGGTCAGGTTGTTCCTTGGCTAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GAGGGCAGTCGTCGCGGACCCACGCGGTTAGCAAGGCTTAGTGCTCGGGCCGGCCGCCTTCACTTCCCTCCCGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTTTTCCTCCCGACTTATCCACTTTAGGGGCGTCTCGGAGTGCCGGAGGCCCCCGGGGAAGAGCGGGGTGCCGG 222
Query 1 -----------------------------------------------ATGTTCAGTCTGATGGCCAGTTGCTGC 27
|||||||||||||||||||||||||||
Sbjct 223 TGTCCGCTCCGGGCTCGGATGGGAAGTGGTGGGAGGAGCGACCCGGGATGTTCAGTCTGATGGCCAGTTGCTGC 296
Query 28 GGCTGGTTCAAGCGGTGGCGGGAGCCTGTCAGAAAGGTGACTCTTTTGATGGTGGGACTTGATAATGCTGGTAA 101
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GGCTGGTTCAAGCGGTGGCGGGAGCCTGTC----AGGTGACTCTTTTGATGGTGGGACTTGATAATGCTGGTAA 366
Query 102 AACCGCAACAGCAAAGGGAATCCAAGGAGAATACCCTGAAGATGTAGCTCCTACTGTTGGATTTTCAAAAATTA 175
|||||||||||||||||||||||||||||
Sbjct 367 AACCGCAACAGCAAAGGGAATCCAAGGAG--------------------------------------------- 395
Query 176 ACCTTAGACAAGGAAAGTTTGAAGTCACCATCTTTGACTTGGGAGGTGGAATAAGAATTCGGGGAATCTGGAAG 249
Sbjct 396 -------------------------------------------------------------------------- 395
Query 250 AATTACTATGCTGAATCCTATGGGGTAATATTTGTTGTGGATTCCAGTGATGAAGAGAGAATGGAAGAGACAAA 323
Sbjct 396 -------------------------------------------------------------------------- 395
Query 324 AGAGGCTATGTCAGAAATGCTAAGACATCCTAGGATATCGGGAAAGCCTATATTGGTGTTGGCAAATAAACAAG 397
|||||||||||||||||
Sbjct 396 ---------------------------------------------------------GTTGGCAAATAAACAAG 412
Query 398 ATAAAGAAGGAGCTTTAGGAGAAGCTGATGTCATTGAATGTCTATCTCTGGAAAAATTGGTCAATGAGCACAAG 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 ATAAAGAAGGAGCTTTAGGAGAAGCTGATGTCATTGAATGTCTATCTCTGGAAAAATTGGTCAATGAGCACAAG 486
Query 472 TGCCTGTGTCAGATAGAACCATGTTCAGCAATCTCGGGGTATGGAAAGAAAATTGACAAGTCCATTAAAAAAGG 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 TGCCTGTGTCAGATAGAACCATGTTCAGCAATCTCGGGGTATGGAAAGAAAATTGACAAGTCCATTAAAAAAGG 560
Query 546 CCTTTATTGGCTGCTACATGTTATTGCAAGAGACTTTGATGCCTTAAATGAACGCATCCAAAAAGAGACAACAG 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 CCTTTATTGGCTGCTACATGTTATTGCAAGAGACTTTGATGCCTTAAATGAACGCATCCAAAAAGAGACAACAG 634
Query 620 AGCAGCGTGCTCTTGAGGAACAAGAGAAACAAGAAAGAGCTGAACGAGTGCGAAAATTACGAGAAGAAAGAAAA 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 AGCAGCGTGCTCTTGAGGAACAAGAGAAACAAGAAAGAGCTGAACGAGTGCGAAAATTACGAGAAGAAAGAAAA 708
Query 694 CAAAATGAACAGGAGCAGGCTGAACTCGATGGAACCAGTGGTCTGGCTGAGTTGGACCCAGAACCAACGAATCC 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 CAAAATGAACAGGAGCAGGCTGAACTCGATGGAACCAGTGGTCTGGCTGAGTTGGACCCAGAACCAACGAATCC 782
Query 768 TTTCCAGCCAATAGCATCTGTAATCATTGAGAATGAAGGAAAACTTGAAAGAGAGAAAAAAAACCAAAAAATGG 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 TTTCCAGCCAATAGCATCTGTAATCATTGAGAATGAAGGAAAACTTGAAAGAGAGAAAAAAAACCAAAAAATGG 856
Query 842 AGAAAGACAGTGATGGCTGCCACCTGAAACATAAAATGGAGCATGAGCAAATAGAGACACAAGGCCAGGTTAAT 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 AGAAAGACAGTGATGGCTGCCACCTGAAACATAAAATGGAGCATGAGCAAATAGAGACACAAGGCCAGGTTAAT 930
Query 916 CACAATGGCCAAAAAAATAATGAATTTGGACTAGTAGAAAATTATAAGGAGGCATTAACACAGCAGTTAAAGAA 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 CACAATGGCCAAAAAAATAATGAATTTGGACTAGTAGAAAATTATAAGGAGGCATTAACACAGCAGTTAAAGAA 1004
Query 990 TGAAGATGAGACAGACCGGCCATCATTGGAATCAGCTAATGGTAAAAAGAAAACTAAGAAACTAAGAATGAAAA 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 TGAAGATGAGACAGACCGGCCATCATTGGAATCAGCTAATGGTAAAAAGAAAACTAAGAAACTAAGAATGAAAA 1078
Query 1064 GGAACCACCGGGTAGAACCACTTAATATAGATGACTGTGCTCCTGAGAGTCCAACGCCACCCCCACCCCCTCCT 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GGAACCACCGGGTAGAACCACTTAATATAGATGACTGTGCTCCTGAGAGTCCAACGCCACCCCCACCCCCTCCT 1152
Query 1138 CCTGTTGGCTGGGGAACCCCTAAAGTCACTAGACTTCCAAAACTTGAGCCTCTTGGTGAAACACATCATAATGA 1211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 CCTGTTGGCTGGGGAACCCCTAAAGTCACTAGACTTCCAAAACTTGAGCCTCTTGGTGAAACACATCATAATGA 1226
Query 1212 TTTCTATAGGAAGCCACTGCCTCCCCTGGCTGTGCCACAGCGACCTAACAGTGATGCTCATGATGTGATCTCA- 1284
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 TTTCTATAGGAAGCCACTGCCTCCCCTGGCTGTGCCACAGCGACCTAACAGTGATGCTCATGATGTGATCTCAT 1300
Query 1285 -------------------------------------------------------------------------- 1284
Sbjct 1301 AAACAAGACGTATGGAGGAGTTCTCTTAATATCAGCAAGGTGAACTGGGACATTCTTCTTTCTCAGAAGAAGAA 1374
Query 1285 -------------------------------------------------------------------------- 1284
Sbjct 1375 ACATCTTGTAAATTGATGACTGGGGCAAGATAACCATAATAATTTTAGTGAGAAGATTAATACTCAAGGACCTG 1448
Query 1285 -------------------------------------------------------------------------- 1284
Sbjct 1449 ACTTGATAATTACTTATTTGTGTTTTTCATGGTTAAAAAAATAAAAGAAGCACAATGACCAGTACATGAAATCA 1522
Query 1285 -------------------------------------------------------------------------- 1284
Sbjct 1523 GCATTTGGACCAAATTAGCAAGATTTACTGTTGACTCTGGTTTATACATCCCCACTCATGAGCATACTTCTGAA 1596
Query 1285 -------------------------------------------------------------------------- 1284
Sbjct 1597 GGAAAACTTTACAAAAAGAGCCAATGGACTCAGCACTTTCTTTACTATTTGTTCAATAGCCTATATTTCTAGAT 1670
Query 1285 -------------------------------------------------------------------------- 1284
Sbjct 1671 ATTAAATATTTTTTGTAAGATATATGCACATAGAAGGGGGACTTCTAGGAATTTATAACCAAAATTTTAAAACT 1744
Query 1285 -------------------------------------------------------------------------- 1284
Sbjct 1745 ATTTTTATATTTTTTTAAATCTTTAAAAATTTTAATTACTGTGATATTGATTATACACCTTTTTTATAGATGAT 1818
Query 1285 -------------------------------------------------------------------------- 1284
Sbjct 1819 TTGTTTAAATTATATCTGGAAAATAGAGTTGATTTACTTTCAGACATGAACTATACAAACAGGATATATTTATA 1892
Query 1285 -------------------------------------------------------------------------- 1284
Sbjct 1893 TGGCTTGAGGTATGTTTTGTAATAGCGTTGTTCTTTAAGTGTACATCGTAATTTGACCTAATTTAAAAATAATA 1966
Query 1285 -------------------------------------------------------------------------- 1284
Sbjct 1967 TATTTTCGAAGTAGTAGATTCTCAGATCTTTATTCTAACAATTACATGATTTGAAAACAGTACTCAATGAGACT 2040
Query 1285 -------------------------------------------------------------------------- 1284
Sbjct 2041 GGAAATACCTTTTGTACCTAAATGTTTTTTAAATTAATCAAAATACATTCTGTGAGATACTATTAAAAGTCTCA 2114
Query 1285 -------------------------------------------------------------------------- 1284
Sbjct 2115 GTAAAGTCCTATTTTAAAGGTTAGACACTTTCAGAGATCAAGGTGCTCCCTATACTCCCTTGTTCCATCAGAAG 2188
Query 1285 -------------------------------------------------------------------------- 1284
Sbjct 2189 CTGCAGTGACTCTTTTAGGTGATTCTAATTCTTTCATGCCTTGAAATTAAACTATGAAATTAAAGGCAGAAAAA 2262
Query 1285 -------------------------------------------------------------------------- 1284
Sbjct 2263 CTGGAAAACCTACTGCAGGTCCAGAGACTTCTGTTTTACAACTGGGAAACAGCTTGTGTACTAAAGTAATGAGA 2336
Query 1285 -------------------------------------------------------------------------- 1284
Sbjct 2337 ATAAAAATGTTGGCCCAAAATTACTTTTATAAATAAATAATTCCAAAATAATTTCTTAATTTAAAATGATAGCA 2410
Query 1285 -------------------------------------------------------------------------- 1284
Sbjct 2411 CTTCTCTTGCACTTAAGAATGGCATCCATAAGATTCTGTATTTGGCATTTAGACTAACTTCTAGATGTATATTT 2484
Query 1285 -------------------------------------------------------------------------- 1284
Sbjct 2485 TTAATAATAGATTCATAATGTTACATTTAATTGAAAACAAACCTTTATATCCAATGAAAATAGTATAAACAGAA 2558
Query 1285 -------------------------------------------------------------------------- 1284
Sbjct 2559 TGATTTTTATACCACCTTGTTAAGATTGGTGCTTTTGGTAACTTGTACTGACACAACAGACATGTGCTAGTATC 2632
Query 1285 -------------------------------------------------------------------------- 1284
Sbjct 2633 TGATAACATTAAGTACATTTTATGTCGTTTAATATAATTATTTACTTTAAAAATTGTACTTCAGAACATCAGAT 2706
Query 1285 -------------------------------------------------------------------------- 1284
Sbjct 2707 TTTATTCACATTTTTTAACTCACTGAACTTTAATAATCAGGTCACCTGTACTCTAGTCAGCACTGTATATATTC 2780
Query 1285 -------------------------------------------------------------------------- 1284
Sbjct 2781 TTGGAGTTTGTACATGGGACTTAGCAACCACACTGAGTGAGGTAAAAGCATTTGATTTCAGATCTAAAATTCGT 2854
Query 1285 -------------------------------------------------------------------------- 1284
Sbjct 2855 AACAACCTAAATTTGAGAGGTGGCTGAAATGTGATGAAAAGCAATACGAAAAGACAATGTAAACTTTGAAAAGG 2928
Query 1285 -------------------------------------------------------------------------- 1284
Sbjct 2929 ATTTTAGAGGGAAAATTGCATAGCTTTTTGTAACATTTACTTAATTTTAAAACTAAACTCATACTTTTGCTATC 3002
Query 1285 -------------------------------------------------------------------------- 1284
Sbjct 3003 TTTTTAATATTTATCTCGTTTGGGAGTATACGTGTTTTTAAAATTTGTGTTTTCTATCTGTTTACTATAGTGTA 3076
Query 1285 -------------------------------------------------------------------------- 1284
Sbjct 3077 GCTACTGGCTTCATTTAATAAAAATAAATGATTTTGAAATTAAATATAATATAGAATTCACATTTTATATAGCT 3150
Query 1285 -------------------------------------------------------------------------- 1284
Sbjct 3151 CTCTCAAAAATTAATTTTTATTCCTTAAGCATTTTAAAAACATTTTAAAAAATGTTTTGTAAATCCAGGTGTAT 3224
Query 1285 -------------------------------------------------------------------------- 1284
Sbjct 3225 TTTAACAATTAAATGCCTATTTTGTTATATGTTATACTTTTATTCTTAATTCTGAATTTTGACATTTTCACACA 3298
Query 1285 -------------------------------------------------------------------------- 1284
Sbjct 3299 ATAAAAATAATTTATATCAATATTCTGTTTCTCTTTTCAATTGGTAGATTTAAATGATTTCCTTTGGGTAATAA 3372
Query 1285 -------------------------------------------------------------------------- 1284
Sbjct 3373 AATAGGTAAAGATTTTAAAATATGATTATTGAAAAACAGTTTAAATCAGTAGATTAAAATAATGCATTTTTTTG 3446
Query 1285 -------------------------------------------------------------------------- 1284
Sbjct 3447 ATACTTTACACACAAAACTTTTTTCTCTCTGCAAGTTTTTATGTATGTGGGAAAGAATTTGTGATTTTAAATGC 3520
Query 1285 -------------------------------------------------------------------------- 1284
Sbjct 3521 AGCTACAAATAGCATTTCACCATATGATGTTAGAGGATTTGATGTCTGTCTTGCGTTAAAGCTGTTGGTCAACA 3594
Query 1285 -------------------------------------------------------------------------- 1284
Sbjct 3595 GATATGTTTTTATGTATTTAAAAGAGGCTCTTGTGTGCCTTTATGTGTAAAATGCATATTACGTAGTATACATG 3668
Query 1285 ------------------------------------------------- 1284
Sbjct 3669 ATATTGTATGTAACTGACTTCAAATATAAAACTATGCATAGAAACAACA 3717
