Construct: ORF ccsbBroadEn_05195

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009486.1_s300c1, BRDN0000387835
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ARL13B (200894)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 200894 ARL13B ADP ribosylation factor lik... NM_001174150.2 100% 100%
2 human 200894 ARL13B ADP ribosylation factor lik... NM_182896.3 100% 100%
3 human 200894 ARL13B ADP ribosylation factor lik... XM_011512535.2 94.1% 94.1% 0_1ins75
4 human 200894 ARL13B ADP ribosylation factor lik... NM_001321328.2 92.1% 91.2% (many diffs)
5 human 200894 ARL13B ADP ribosylation factor lik... XM_006713532.3 92.1% 91.2% (many diffs)
6 human 200894 ARL13B ADP ribosylation factor lik... XM_011512534.2 92.1% 91.2% (many diffs)
7 human 200894 ARL13B ADP ribosylation factor lik... XM_011512532.2 89% 88.6% 0_1ins91;39_93del
8 human 200894 ARL13B ADP ribosylation factor lik... XM_011512533.2 89% 88.6% 0_1ins91;39_93del
9 human 200894 ARL13B ADP ribosylation factor lik... NM_001174151.1 75.9% 75.9% 0_1ins309
10 human 200894 ARL13B ADP ribosylation factor lik... XM_017005853.1 75.9% 75.9% 0_1ins309
11 human 200894 ARL13B ADP ribosylation factor lik... NM_144996.4 75% 75% 59_60ins321
12 human 200894 ARL13B ADP ribosylation factor lik... NR_033427.2 26% (many diffs)
13 human 200894 ARL13B ADP ribosylation factor lik... NR_135621.2 25.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1353
ORF length:
1284
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTTCAGTCTG ATGGCCAGTT GCTGCGGCTG GTTCAAGCGG TGGCGGGAGC
121CTGTCAGAAA GGTGACTCTT TTGATGGTGG GACTTGATAA TGCTGGTAAA ACCGCAACAG
181CAAAGGGAAT CCAAGGAGAA TACCCTGAAG ATGTAGCTCC TACTGTTGGA TTTTCAAAAA
241TTAACCTTAG ACAAGGAAAG TTTGAAGTCA CCATCTTTGA CTTGGGAGGT GGAATAAGAA
301TTCGGGGAAT CTGGAAGAAT TACTATGCTG AATCCTATGG GGTAATATTT GTTGTGGATT
361CCAGTGATGA AGAGAGAATG GAAGAGACAA AAGAGGCTAT GTCAGAAATG CTAAGACATC
421CTAGGATATC GGGAAAGCCT ATATTGGTGT TGGCAAATAA ACAAGATAAA GAAGGAGCTT
481TAGGAGAAGC TGATGTCATT GAATGTCTAT CTCTGGAAAA ATTGGTCAAT GAGCACAAGT
541GCCTGTGTCA GATAGAACCA TGTTCAGCAA TCTCGGGGTA TGGAAAGAAA ATTGACAAGT
601CCATTAAAAA AGGCCTTTAT TGGCTGCTAC ATGTTATTGC AAGAGACTTT GATGCCTTAA
661ATGAACGCAT CCAAAAAGAG ACAACAGAGC AGCGTGCTCT TGAGGAACAA GAGAAACAAG
721AAAGAGCTGA ACGAGTGCGA AAATTACGAG AAGAAAGAAA ACAAAATGAA CAGGAGCAGG
781CTGAACTCGA TGGAACCAGT GGTCTGGCTG AGTTGGACCC AGAACCAACG AATCCTTTCC
841AGCCAATAGC ATCTGTAATC ATTGAGAATG AAGGAAAACT TGAAAGAGAG AAAAAAAACC
901AAAAAATGGA GAAAGACAGT GATGGCTGCC ACCTGAAACA TAAAATGGAG CATGAGCAAA
961TAGAGACACA AGGCCAGGTT AATCACAATG GCCAAAAAAA TAATGAATTT GGACTAGTAG
1021AAAATTATAA GGAGGCATTA ACACAGCAGT TAAAGAATGA AGATGAGACA GACCGGCCAT
1081CATTGGAATC AGCTAATGGT AAAAAGAAAA CTAAGAAACT AAGAATGAAA AGGAACCACC
1141GGGTAGAACC ACTTAATATA GATGACTGTG CTCCTGAGAG TCCAACGCCA CCCCCACCCC
1201CTCCTCCTGT TGGCTGGGGA ACCCCTAAAG TCACTAGACT TCCAAAACTT GAGCCTCTTG
1261GTGAAACACA TCATAATGAT TTCTATAGGA AGCCACTGCC TCCCCTGGCT GTGCCACAGC
1321GACCTAACAG TGATGCTCAT GATGTGATCT CATTGCCAAC TTTCTTGTAC AAAGTtggca
1381ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)

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