Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_05196
- Subject:
- NM_001271357.1
- Aligned Length:
- 1746
- Identities:
- 904
- Gaps:
- 729
Alignment
Query 1 ATGAATGCCATCGTGGCTCTCTGCCACTTCTGCGAGCTCCACGGCCCCCGCACTCTCTTCTGCACGGAGGTGCT 74
|||||.|||||.||.||.|||||||||||||||||||||||.|||||||||||.||||||||||||||.||.||
Sbjct 1 ATGAACGCCATAGTCGCCCTCTGCCACTTCTGCGAGCTCCATGGCCCCCGCACGCTCTTCTGCACGGAAGTTCT 74
Query 75 GCACGCCCCACTTCCTCAAGGGGATGGGAATGAGGACAGTCCTGGCCAGGGTGAGCAGGCGGAAGAAGAGGAAG 148
.|||||.||.||.||.||.||||..||.|.||.|||||||||||.|||||.|||||||||.||.||.|||||.|
Sbjct 75 ACACGCTCCCCTGCCCCAGGGGGCCGGAAGTGGGGACAGTCCTGACCAGGTTGAGCAGGCTGAGGAGGAGGAGG 148
Query 149 GTGGCATTCAGATGAACAGTCGGATGCGTGCGCACAGCCCCGCAGAGGGGGCCAGC-GTCGAGTCCAGCAGCCC 221
|||||||||||||||.|||.|||.|.|||||.||||||||.||.|||||.|||||| || ||||||||||||||
Sbjct 149 GTGGCATTCAGATGAGCAGCCGGGTCCGTGCCCACAGCCCAGCCGAGGGTGCCAGCAGT-GAGTCCAGCAGCCC 221
Query 222 GGGGCCCAAAAAGTCGGACATGTGCGAGGGCTGCCGGTCACTTGCTGCAGGGCACCCGGGATATATCAGCCATG 295
|||||||||.||||||||||||||.||||||||||||||||||||.|.|||||||||.||.||||||||.||||
Sbjct 222 GGGGCCCAAGAAGTCGGACATGTGTGAGGGCTGCCGGTCACTTGCCGTAGGGCACCCAGGCTATATCAGTCATG 295
Query 296 ATAAAGAGACCTCCATTAAATACGTCAGCCACCAGCACCCCAGCCACCCCCAGCTCTTCAGCATTGTCCGCCAG 369
|||||||||||||.|||||.||||||||.|||||||||||||.||||||.||||||||||||||.|||||||||
Sbjct 296 ATAAAGAGACCTCTATTAAGTACGTCAGTCACCAGCACCCCAACCACCCGCAGCTCTTCAGCATCGTCCGCCAG 369
Query 370 GCCTGTGTCCGGAGCCTGAGCTGTGAGGTCTGCCCTGGCCGTGAAGGCCCCATCTTCTTCGGAGATGAGCAGCA 443
|||||||||||||||||||||||||||||.||||||||.||||||||||||||||||||.||.|||||||||||
Sbjct 370 GCCTGTGTCCGGAGCCTGAGCTGTGAGGTATGCCCTGGTCGTGAAGGCCCCATCTTCTTTGGTGATGAGCAGCA 443
Query 444 CGGCTTTGTGTTCAGCCACACCTTCTTCATCAAGGACAGCCTGGCCAGGGGCTTCCAGCGCTGGTACAGCATCA 517
|||||||||||||||||||||||||||||||||.||||||||||||||.|||||||||||||||||||||||||
Sbjct 444 CGGCTTTGTGTTCAGCCACACCTTCTTCATCAAAGACAGCCTGGCCAGAGGCTTCCAGCGCTGGTACAGCATCA 517
Query 518 TCACCATCATGATGGACCGGATCTACCTCATCAACTCCTGGCCCTTCCTGCTGGGGAAGGTCCGGGGAATCATC 591
||.|||||||||||||.||||||||||||||||||||||||||||||||||||||||.|.||||.||.||||||
Sbjct 518 TCGCCATCATGATGGATCGGATCTACCTCATCAACTCCTGGCCCTTCCTGCTGGGGAGGATCCGCGGCATCATC 591
Query 592 GATGAGCTCCAGGGCAAGGCGCTCAAGGTGTTTGAGGCAGAGCAGTTTGGATGCCCACAGCGTGCTCAGAGGAT 665
..|||||||||||.||||||..|||||||||||||||||||||||||||||||.|||||||||||.||||||||
Sbjct 592 AGTGAGCTCCAGGCCAAGGCCTTCAAGGTGTTTGAGGCAGAGCAGTTTGGATGTCCACAGCGTGCCCAGAGGAT 665
Query 666 GAACACAGCCTTCACGCCATTCCTACACCAGAGGAACGGCAACGCCGCCCGCTCGCTGACATCGCTGACAAGTG 739
||||||.|||||||||||.|||||.||||||||||||||||||||.||||||||.|||||.||..||||.||||
Sbjct 666 GAACACTGCCTTCACGCCCTTCCTGCACCAGAGGAACGGCAACGCTGCCCGCTCTCTGACCTCCTTGACCAGTG 739
Query 740 ATGACAACCTGTGGGCGTGCCTGCACACCTCCTTTGCCTGGCTCCTGAAGGCGTGTGGCAGCCGGCTGACCGAG 813
||||||||.||||||||||.||||||||.|||||||||||||||||||||||.||.||.|||.|||||||.||.
Sbjct 740 ATGACAACTTGTGGGCGTGTCTGCACACTTCCTTTGCCTGGCTCCTGAAGGCATGCGGTAGCAGGCTGACAGAA 813
Query 814 AAGCTCCTGGAAGGTGCTCCGACCGAGGATACCTTGGTCCAGATGGAGAAGCTCGCTG---------------- 871
||||||.|.||.||.|||||.||.|||||.|||.|||||||||||||||||||.||||
Sbjct 814 AAGCTCTTAGAGGGCGCTCCCACAGAGGACACCCTGGTCCAGATGGAGAAGCTTGCTGACTTGGAGGAAGAATC 887
Query 872 -----------------GTGAGGCAGGGG-------------TGCTGT------------TGCCG--GGGC--- 898
.||||||.|.|| |.|||| |||.| ||||
Sbjct 888 AGAAAGTTGGGACAATTCTGAGGCTGAGGAGGAGGAGAAAGCTCCTGTTACACCAGAGGGTGCTGAAGGGCGAG 961
Query 899 --CTTGGCCCGGATGGCC--------------------------GTGGG-GCGG---------------TACCA 928
|| |.||.|.||.|| ||||| ||.| ||||.
Sbjct 962 AGCT--GACCAGTTGCCCAACAGAGTCATCCTTTCTCTCAGCCTGTGGGAGCTGGCAGCCCCCAAAGCTTACCG 1033
Query 929 GCT----GTC---------------------------TGCTC--TCC---------------TGGCA------- 947
||| ||| ||||| ||| |||||
Sbjct 1034 GCTTCAAGTCTCTTCGACACATGAGACAGGTCTTGGGTGCTCCATCCTTCCGTATGTTGGCTTGGCATGTCCTC 1107
Query 948 ----GGAATCGCTGAGG-GA--GGGAAACGC--GGCTCTGAA----------TCAGC----------------- 985
|||||| ||| || .|||||.|| .|.|.|||| |||||
Sbjct 1108 ATGGGGAATC----AGGTGATCTGGAAAAGCAGAGATGTGAACCTGGTCCATTCAGCGTTTGAAGTCCTCCGGA 1177
Query 986 -------------------------------------------CCAGAACGA----GCCT-TCG--GGAA---- 1005
||||.|.|| |||| ||| |.||
Sbjct 1178 CCATGCTGCCTGTGGGCTGTGTCCGCATCATCCCTTACAGCAGCCAGTATGAGGAGGCCTATCGCTGCAACTTC 1251
Query 1006 -----GCTCA-CCCT------CCGATCTCGGTG----------------------------------------- 1026
||||| |||| ||.|||.| ||
Sbjct 1252 CTGGGGCTCAGCCCTCCCGTGCCTATCCC--TGCCCATGTTCTGGCCTCAGAGTTCGTAGTTGTCGTGGAGGTC 1323
Query 1027 -------------------------------------------------------------------------- 1026
Sbjct 1324 CACACGGCCACTCGCTCAAACCTCCACCCTGCTGGGTGCGAGGATGACCAGTCCCTCAGCAAGTATGAGTTTGT 1397
Query 1027 -------------------------------------------------------------------------- 1026
Sbjct 1398 GGTGACCAGTGGTAGCCCTGTGGCTGCAGACAGAGTTGGGCCCACTATCCTGAATAAGATTGAAGCAGCTCTGA 1471
Query 1027 -------------------------------------------------------------------------- 1026
Sbjct 1472 CCAACCAGAACCTGTCTGTGGATGTGGTGGACCAATGTCTCATCTGCCTCAAGGAGGAATGGATGAACAAAGTG 1545
Query 1027 -------------------------------------------------------------------------- 1026
Sbjct 1546 AAAGTCCTGTTTAAATTCACCAAGGTAGACAGTCGCCCCAAGGAGGACACACAGAAGCTCCTAAGCGTCCTAGG 1619
Query 1027 -------------------------------------------------------------------------- 1026
Sbjct 1620 CGCATCAGAGGAGGACAACGTCAAACTGCTGAAGTTCTGGATGACGGGACTGAGCAAAACCTACAAGTCCCATC 1693
Query 1027 -------------------------------------------- 1026
Sbjct 1694 TCATGTCCACCGTCCGAAGCCCCACAGCTACAGAGTCACGGAGC 1737
