Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_05196
Subject:
NM_001271357.1
Aligned Length:
1746
Identities:
904
Gaps:
729

Alignment

Query    1  ATGAATGCCATCGTGGCTCTCTGCCACTTCTGCGAGCTCCACGGCCCCCGCACTCTCTTCTGCACGGAGGTGCT  74
            |||||.|||||.||.||.|||||||||||||||||||||||.|||||||||||.||||||||||||||.||.||
Sbjct    1  ATGAACGCCATAGTCGCCCTCTGCCACTTCTGCGAGCTCCATGGCCCCCGCACGCTCTTCTGCACGGAAGTTCT  74

Query   75  GCACGCCCCACTTCCTCAAGGGGATGGGAATGAGGACAGTCCTGGCCAGGGTGAGCAGGCGGAAGAAGAGGAAG  148
            .|||||.||.||.||.||.||||..||.|.||.|||||||||||.|||||.|||||||||.||.||.|||||.|
Sbjct   75  ACACGCTCCCCTGCCCCAGGGGGCCGGAAGTGGGGACAGTCCTGACCAGGTTGAGCAGGCTGAGGAGGAGGAGG  148

Query  149  GTGGCATTCAGATGAACAGTCGGATGCGTGCGCACAGCCCCGCAGAGGGGGCCAGC-GTCGAGTCCAGCAGCCC  221
            |||||||||||||||.|||.|||.|.|||||.||||||||.||.|||||.|||||| || ||||||||||||||
Sbjct  149  GTGGCATTCAGATGAGCAGCCGGGTCCGTGCCCACAGCCCAGCCGAGGGTGCCAGCAGT-GAGTCCAGCAGCCC  221

Query  222  GGGGCCCAAAAAGTCGGACATGTGCGAGGGCTGCCGGTCACTTGCTGCAGGGCACCCGGGATATATCAGCCATG  295
            |||||||||.||||||||||||||.||||||||||||||||||||.|.|||||||||.||.||||||||.||||
Sbjct  222  GGGGCCCAAGAAGTCGGACATGTGTGAGGGCTGCCGGTCACTTGCCGTAGGGCACCCAGGCTATATCAGTCATG  295

Query  296  ATAAAGAGACCTCCATTAAATACGTCAGCCACCAGCACCCCAGCCACCCCCAGCTCTTCAGCATTGTCCGCCAG  369
            |||||||||||||.|||||.||||||||.|||||||||||||.||||||.||||||||||||||.|||||||||
Sbjct  296  ATAAAGAGACCTCTATTAAGTACGTCAGTCACCAGCACCCCAACCACCCGCAGCTCTTCAGCATCGTCCGCCAG  369

Query  370  GCCTGTGTCCGGAGCCTGAGCTGTGAGGTCTGCCCTGGCCGTGAAGGCCCCATCTTCTTCGGAGATGAGCAGCA  443
            |||||||||||||||||||||||||||||.||||||||.||||||||||||||||||||.||.|||||||||||
Sbjct  370  GCCTGTGTCCGGAGCCTGAGCTGTGAGGTATGCCCTGGTCGTGAAGGCCCCATCTTCTTTGGTGATGAGCAGCA  443

Query  444  CGGCTTTGTGTTCAGCCACACCTTCTTCATCAAGGACAGCCTGGCCAGGGGCTTCCAGCGCTGGTACAGCATCA  517
            |||||||||||||||||||||||||||||||||.||||||||||||||.|||||||||||||||||||||||||
Sbjct  444  CGGCTTTGTGTTCAGCCACACCTTCTTCATCAAAGACAGCCTGGCCAGAGGCTTCCAGCGCTGGTACAGCATCA  517

Query  518  TCACCATCATGATGGACCGGATCTACCTCATCAACTCCTGGCCCTTCCTGCTGGGGAAGGTCCGGGGAATCATC  591
            ||.|||||||||||||.||||||||||||||||||||||||||||||||||||||||.|.||||.||.||||||
Sbjct  518  TCGCCATCATGATGGATCGGATCTACCTCATCAACTCCTGGCCCTTCCTGCTGGGGAGGATCCGCGGCATCATC  591

Query  592  GATGAGCTCCAGGGCAAGGCGCTCAAGGTGTTTGAGGCAGAGCAGTTTGGATGCCCACAGCGTGCTCAGAGGAT  665
            ..|||||||||||.||||||..|||||||||||||||||||||||||||||||.|||||||||||.||||||||
Sbjct  592  AGTGAGCTCCAGGCCAAGGCCTTCAAGGTGTTTGAGGCAGAGCAGTTTGGATGTCCACAGCGTGCCCAGAGGAT  665

Query  666  GAACACAGCCTTCACGCCATTCCTACACCAGAGGAACGGCAACGCCGCCCGCTCGCTGACATCGCTGACAAGTG  739
            ||||||.|||||||||||.|||||.||||||||||||||||||||.||||||||.|||||.||..||||.||||
Sbjct  666  GAACACTGCCTTCACGCCCTTCCTGCACCAGAGGAACGGCAACGCTGCCCGCTCTCTGACCTCCTTGACCAGTG  739

Query  740  ATGACAACCTGTGGGCGTGCCTGCACACCTCCTTTGCCTGGCTCCTGAAGGCGTGTGGCAGCCGGCTGACCGAG  813
            ||||||||.||||||||||.||||||||.|||||||||||||||||||||||.||.||.|||.|||||||.||.
Sbjct  740  ATGACAACTTGTGGGCGTGTCTGCACACTTCCTTTGCCTGGCTCCTGAAGGCATGCGGTAGCAGGCTGACAGAA  813

Query  814  AAGCTCCTGGAAGGTGCTCCGACCGAGGATACCTTGGTCCAGATGGAGAAGCTCGCTG----------------  871
            ||||||.|.||.||.|||||.||.|||||.|||.|||||||||||||||||||.||||                
Sbjct  814  AAGCTCTTAGAGGGCGCTCCCACAGAGGACACCCTGGTCCAGATGGAGAAGCTTGCTGACTTGGAGGAAGAATC  887

Query  872  -----------------GTGAGGCAGGGG-------------TGCTGT------------TGCCG--GGGC---  898
                             .||||||.|.||             |.||||            |||.|  ||||   
Sbjct  888  AGAAAGTTGGGACAATTCTGAGGCTGAGGAGGAGGAGAAAGCTCCTGTTACACCAGAGGGTGCTGAAGGGCGAG  961

Query  899  --CTTGGCCCGGATGGCC--------------------------GTGGG-GCGG---------------TACCA  928
              ||  |.||.|.||.||                          ||||| ||.|               ||||.
Sbjct  962  AGCT--GACCAGTTGCCCAACAGAGTCATCCTTTCTCTCAGCCTGTGGGAGCTGGCAGCCCCCAAAGCTTACCG  1033

Query  929  GCT----GTC---------------------------TGCTC--TCC---------------TGGCA-------  947
            |||    |||                           |||||  |||               |||||       
Sbjct 1034  GCTTCAAGTCTCTTCGACACATGAGACAGGTCTTGGGTGCTCCATCCTTCCGTATGTTGGCTTGGCATGTCCTC  1107

Query  948  ----GGAATCGCTGAGG-GA--GGGAAACGC--GGCTCTGAA----------TCAGC-----------------  985
                ||||||    ||| ||  .|||||.||  .|.|.||||          |||||                 
Sbjct 1108  ATGGGGAATC----AGGTGATCTGGAAAAGCAGAGATGTGAACCTGGTCCATTCAGCGTTTGAAGTCCTCCGGA  1177

Query  986  -------------------------------------------CCAGAACGA----GCCT-TCG--GGAA----  1005
                                                       ||||.|.||    |||| |||  |.||    
Sbjct 1178  CCATGCTGCCTGTGGGCTGTGTCCGCATCATCCCTTACAGCAGCCAGTATGAGGAGGCCTATCGCTGCAACTTC  1251

Query 1006  -----GCTCA-CCCT------CCGATCTCGGTG-----------------------------------------  1026
                 ||||| ||||      ||.|||.|  ||                                         
Sbjct 1252  CTGGGGCTCAGCCCTCCCGTGCCTATCCC--TGCCCATGTTCTGGCCTCAGAGTTCGTAGTTGTCGTGGAGGTC  1323

Query 1027  --------------------------------------------------------------------------  1026
                                                                                      
Sbjct 1324  CACACGGCCACTCGCTCAAACCTCCACCCTGCTGGGTGCGAGGATGACCAGTCCCTCAGCAAGTATGAGTTTGT  1397

Query 1027  --------------------------------------------------------------------------  1026
                                                                                      
Sbjct 1398  GGTGACCAGTGGTAGCCCTGTGGCTGCAGACAGAGTTGGGCCCACTATCCTGAATAAGATTGAAGCAGCTCTGA  1471

Query 1027  --------------------------------------------------------------------------  1026
                                                                                      
Sbjct 1472  CCAACCAGAACCTGTCTGTGGATGTGGTGGACCAATGTCTCATCTGCCTCAAGGAGGAATGGATGAACAAAGTG  1545

Query 1027  --------------------------------------------------------------------------  1026
                                                                                      
Sbjct 1546  AAAGTCCTGTTTAAATTCACCAAGGTAGACAGTCGCCCCAAGGAGGACACACAGAAGCTCCTAAGCGTCCTAGG  1619

Query 1027  --------------------------------------------------------------------------  1026
                                                                                      
Sbjct 1620  CGCATCAGAGGAGGACAACGTCAAACTGCTGAAGTTCTGGATGACGGGACTGAGCAAAACCTACAAGTCCCATC  1693

Query 1027  --------------------------------------------  1026
                                                        
Sbjct 1694  TCATGTCCACCGTCCGAAGCCCCACAGCTACAGAGTCACGGAGC  1737

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