Construct: ORF ccsbBroadEn_05196
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012957.1_s300c1, BRDN0000385913
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FLCN (201163)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 201163 | FLCN | folliculin | NM_144606.7 | 100% | 100% | |
| 2 | human | 201163 | FLCN | folliculin | XM_011523719.3 | 58.6% | 56.4% | (many diffs) |
| 3 | human | 201163 | FLCN | folliculin | NM_001353230.2 | 54.4% | 52.4% | (many diffs) |
| 4 | human | 201163 | FLCN | folliculin | NM_001353231.2 | 54.4% | 52.4% | (many diffs) |
| 5 | human | 201163 | FLCN | folliculin | NM_144997.7 | 54.4% | 52.4% | (many diffs) |
| 6 | human | 201163 | FLCN | folliculin | XM_017024308.1 | 54.4% | 52.4% | (many diffs) |
| 7 | human | 201163 | FLCN | folliculin | NM_001353229.2 | 52.8% | 50.8% | (many diffs) |
| 8 | human | 201163 | FLCN | folliculin | XM_011523714.3 | 52.8% | 50.8% | (many diffs) |
| 9 | human | 201163 | FLCN | folliculin | XM_011523718.3 | 52.8% | 50.8% | (many diffs) |
| 10 | human | 201163 | FLCN | folliculin | XM_011523721.3 | 52.8% | 50.8% | (many diffs) |
| 11 | human | 201163 | FLCN | folliculin | XM_017024305.2 | 52.8% | 50.8% | (many diffs) |
| 12 | human | 201163 | FLCN | folliculin | XM_024450635.1 | 52.8% | 50.8% | (many diffs) |
| 13 | human | 201163 | FLCN | folliculin | XR_001752445.2 | 42.8% | (many diffs) | |
| 14 | human | 201163 | FLCN | folliculin | XM_017024309.2 | 41.9% | 39.6% | (many diffs) |
| 15 | mouse | 216805 | Flcn | folliculin | NM_001271356.1 | 51.7% | 49.6% | (many diffs) |
| 16 | mouse | 216805 | Flcn | folliculin | NM_001271357.1 | 51.7% | 49.6% | (many diffs) |
| 17 | mouse | 216805 | Flcn | folliculin | NM_146018.2 | 51.7% | 49.6% | (many diffs) |
| 18 | mouse | 216805 | Flcn | folliculin | XM_011248905.2 | 51.7% | 49.6% | (many diffs) |
| 19 | mouse | 216805 | Flcn | folliculin | XR_879567.2 | 25.5% | (many diffs) | |
| 20 | mouse | 216805 | Flcn | folliculin | NR_073164.1 | 24% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1092
- ORF length:
- 1026
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA TGCCATCGTG GCTCTCTGCC ACTTCTGCGA GCTCCACGGC CCCCGCACTC 121 TCTTCTGCAC GGAGGTGCTG CACGCCCCAC TTCCTCAAGG GGATGGGAAT GAGGACAGTC 181 CTGGCCAGGG TGAGCAGGCG GAAGAAGAGG AAGGTGGCAT TCAGATGAAC AGTCGGATGC 241 GTGCGCACAG CCCCGCAGAG GGGGCCAGCG TCGAGTCCAG CAGCCCGGGG CCCAAAAAGT 301 CGGACATGTG CGAGGGCTGC CGGTCACTTG CTGCAGGGCA CCCGGGATAT ATCAGCCATG 361 ATAAAGAGAC CTCCATTAAA TACGTCAGCC ACCAGCACCC CAGCCACCCC CAGCTCTTCA 421 GCATTGTCCG CCAGGCCTGT GTCCGGAGCC TGAGCTGTGA GGTCTGCCCT GGCCGTGAAG 481 GCCCCATCTT CTTCGGAGAT GAGCAGCACG GCTTTGTGTT CAGCCACACC TTCTTCATCA 541 AGGACAGCCT GGCCAGGGGC TTCCAGCGCT GGTACAGCAT CATCACCATC ATGATGGACC 601 GGATCTACCT CATCAACTCC TGGCCCTTCC TGCTGGGGAA GGTCCGGGGA ATCATCGATG 661 AGCTCCAGGG CAAGGCGCTC AAGGTGTTTG AGGCAGAGCA GTTTGGATGC CCACAGCGTG 721 CTCAGAGGAT GAACACAGCC TTCACGCCAT TCCTACACCA GAGGAACGGC AACGCCGCCC 781 GCTCGCTGAC ATCGCTGACA AGTGATGACA ACCTGTGGGC GTGCCTGCAC ACCTCCTTTG 841 CCTGGCTCCT GAAGGCGTGT GGCAGCCGGC TGACCGAGAA GCTCCTGGAA GGTGCTCCGA 901 CCGAGGATAC CTTGGTCCAG ATGGAGAAGC TCGCTGGTGA GGCAGGGGTG CTGTTGCCGG 961 GGCCTTGGCC CGGATGGCCG TGGGGCGGTA CCAGCTGTCT GCTCTCCTGG CAGGAATCGC 1021 TGAGGGAGGG AAACGCGGCT CTGAATCAGC CCAGAACGAG CCTTCGGGAA GCTCACCCTC 1081 CGATCTCGGT GTGCCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 1141 caatttgttg caacgaac