Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_05196
- Subject:
- XR_879567.2
- Aligned Length:
- 3523
- Identities:
- 900
- Gaps:
- 2507
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTAATTCTCTCTGACTTTTTTGAAATGTCAGTTTTGACGTCACCCCTGCAGAATGGCTTCTCTCGGCGGCCGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AACCATCTACGCTTTTCCGCGGGGCGACTTGCCGCGCCGAGGGGCGCGCGTGGCCGAGGGGCTTGGATTCCTTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCTGGAGGAGCATTACGTGACACAGCAAGGCTCCGCACATCCTAGTCGCCTGCGGGGGACGCAACGCTGCTCGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TCCGGCTAGTCACTGGCGTTGCCTGCCCTCTGCCGGCCTGCGGATGGTTCGGTCCGGCTGGGTCACGCGCTAAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GCTCAGTGCAAGGGCCTGCGGAACGGGCTAGCACTTGCCGAGGGGCAGAACAGTGGCGACAGCCCCAGGACAGT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGCGAGCGGGTTCCGGCCCAGCATCCGGGAGACGGCGGCAAGCGCCCCAGCTGGGTTGGTGTTGGGCCATAGGG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTGAATGGAAAGCGCGGATGACAACCTCAAGTCTTTGAATTCGAATAGTGCAGCTTGCTTACCTGACTCTTCCG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCGGGCCTCGTACATGTTCTGCTCTAGGCGGGATGGTGCAGTTGTGATGTGCTAAGCATAAGGCCTCGGCCATT 592
Query 1 ----------ATGAATGCCATCGTGGCTCTCTGCCACTTCTGCGAGCTCCACGGCCCCCGCACTCTCTTCTGCA 64
|||||.|||||.||.||.|||||||||||||||||||||||.|||||||||||.||||||||||
Sbjct 593 CTCCAGCACCATGAACGCCATAGTCGCCCTCTGCCACTTCTGCGAGCTCCATGGCCCCCGCACGCTCTTCTGCA 666
Query 65 CGGAGGTGCTGCACGCCCCACTTCCTCAAGGGGATGGGAATGAGGACAGTCCTGGCCAGGGTGAGCAGGCGGAA 138
||||.||.||.|||||.||.||.||.||.||||..||.|.||.|||||||||||.|||||.|||||||||.||.
Sbjct 667 CGGAAGTTCTACACGCTCCCCTGCCCCAGGGGGCCGGAAGTGGGGACAGTCCTGACCAGGTTGAGCAGGCTGAG 740
Query 139 GAAGAGGAAGGTGGCATTCAGATGAACAGTCGGATGCGTGCGCACAGCCCCGCAGAGGGGGCCAGC-GTCGAGT 211
||.|||||.||||||||||||||||.|||.|||.|.|||||.||||||||.||.|||||.|||||| || ||||
Sbjct 741 GAGGAGGAGGGTGGCATTCAGATGAGCAGCCGGGTCCGTGCCCACAGCCCAGCCGAGGGTGCCAGCAGT-GAGT 813
Query 212 CCAGCAGCCCGGGGCCCAAAAAGTCGGACATGTGCGAGGGCTGCCGGTCACTTGCTGCAGGGCACCCGGGATAT 285
|||||||||||||||||||.||||||||||||||.||||||||||||||||||||.|.|||||||||.||.|||
Sbjct 814 CCAGCAGCCCGGGGCCCAAGAAGTCGGACATGTGTGAGGGCTGCCGGTCACTTGCCGTAGGGCACCCAGGCTAT 887
Query 286 ATCAGCCATGATAAAGAGACCTCCATTAAATACGTCAGCCACCAGCACCCCAGCCACCCCCAGCTCTTCAGCAT 359
|||||.|||||||||||||||||.|||||.||||||||.|||||||||||||.||||||.||||||||||||||
Sbjct 888 ATCAGTCATGATAAAGAGACCTCTATTAAGTACGTCAGTCACCAGCACCCCAACCACCCGCAGCTCTTCAGCAT 961
Query 360 TGTCCGCCAGGCCTGTGTCCGGAGCCTGAGCTGTGAGGTCTGCCCTGGCCGTGAAGGCCCCATCTTCTTCGGAG 433
.||||||||||||||||||||||||||||||||||||||.||||||||.||||||||||||||||||||.||.|
Sbjct 962 CGTCCGCCAGGCCTGTGTCCGGAGCCTGAGCTGTGAGGTATGCCCTGGTCGTGAAGGCCCCATCTTCTTTGGTG 1035
Query 434 ATGAGCAGCACGGCTTTGTGTTCAGCCACACCTTCTTCATCAAGGACAGCCTGGCCAGGGGCTTCCAGCGCTGG 507
|||||||||||||||||||||||||||||||||||||||||||.||||||||||||||.|||||||||||||||
Sbjct 1036 ATGAGCAGCACGGCTTTGTGTTCAGCCACACCTTCTTCATCAAAGACAGCCTGGCCAGAGGCTTCCAGCGCTGG 1109
Query 508 TACAGCATCATCACCATCATGATGGACCGGATCTACCTCATCAACTCCTGGCCCTTCCTGCTGGGGAAGGTCCG 581
||||||||||||.|||||||||||||.||||||||||||||||||||||||||||||||||||||||.|.||||
Sbjct 1110 TACAGCATCATCGCCATCATGATGGATCGGATCTACCTCATCAACTCCTGGCCCTTCCTGCTGGGGAGGATCCG 1183
Query 582 GGGAATCATCGATGAGCTCCAGGGCAAGGCGCTCAAGGTGTTTGAGGCAGAGCAGTTTGGATGCCCACAGCGTG 655
.||.||||||..|||||||||||.||||||..|||||||||||||||||||||||||||||||.||||||||||
Sbjct 1184 CGGCATCATCAGTGAGCTCCAGGCCAAGGCCTTCAAGGTGTTTGAGGCAGAGCAGTTTGGATGTCCACAGCGTG 1257
Query 656 CTCAGAGGATGAACACAGCCTTCACGCCATTCCTACACCAGAGGAACGGCAACGCCGCCCGCTCGCTGACATCG 729
|.||||||||||||||.|||||||||||.|||||.||||||||||||||||||||.||||||||.|||||.||.
Sbjct 1258 CCCAGAGGATGAACACTGCCTTCACGCCCTTCCTGCACCAGAGGAACGGCAACGCTGCCCGCTCTCTGACCTCC 1331
Query 730 CTGACAAGTGATGACAACCTGTGGGCGTGCCTGCACACCTCCTTTGCCTGGCTCCTGAAGGCGTGTGGCAGCCG 803
.||||.||||||||||||.||||||||||.||||||||.|||||||||||||||||||||||.||.||.|||.|
Sbjct 1332 TTGACCAGTGATGACAACTTGTGGGCGTGTCTGCACACTTCCTTTGCCTGGCTCCTGAAGGCATGCGGTAGCAG 1405
Query 804 GCTGACCGAGAAGCTCCTGGAAGGTGCTCCGACCGAGGATACCTTGGTCCAGATGGAGAAGCTCGCTG------ 871
||||||.||.||||||.|.||.||.|||||.||.|||||.|||.|||||||||||||||||||.||||
Sbjct 1406 GCTGACAGAAAAGCTCTTAGAGGGCGCTCCCACAGAGGACACCCTGGTCCAGATGGAGAAGCTTGCTGACTTGG 1479
Query 872 ---------------------------GTGAGGCAGGGG-------------TGCTGT------------TGCC 893
.||||||.|.|| |.|||| |||.
Sbjct 1480 AGGAAGAATCAGAAAGTTGGGACAATTCTGAGGCTGAGGAGGAGGAGAAAGCTCCTGTTACACCAGAGGGTGCT 1553
Query 894 G--GGGC-----CTTGGCCCGGATGGCC--------------------------GTGGG-GCGG---------- 923
| |||| || |.||.|.||.|| ||||| ||.|
Sbjct 1554 GAAGGGCGAGAGCT--GACCAGTTGCCCAACAGAGTCATCCTTTCTCTCAGCCTGTGGGAGCTGGCAGCCCCCA 1625
Query 924 -----TACCAGCT----GTC---------------------------TGCTC--TCC---------------TG 944
||||.||| ||| ||||| ||| ||
Sbjct 1626 AAGCTTACCGGCTTCAAGTCTCTTCGACACATGAGACAGGTCTTGGGTGCTCCATCCTTCCGTATGTTGGCTTG 1699
Query 945 GCA-----------GGAATCGCTGAGG-GA--GGGAAACGC--GGCTCTGAA----------TCAGC------- 985
||| |||||| ||| || .|||||.|| .|.|.|||| |||||
Sbjct 1700 GCATGTCCTCATGGGGAATC----AGGTGATCTGGAAAAGCAGAGATGTGAACCTGGTCCATTCAGCGTTTGAA 1769
Query 986 -----CCAG-----AACGAGCCTTC-GGGAAGCT-----------------CACCCTCCGAT-CTCGGTG---- 1026
||.| ||| .|||| ||||||.| |||...|.||| |||.|||
Sbjct 1770 GTCCTCCGGTCTGAAAC---TCTTCTGGGAAGTTATCTGGGCAAGCTCTGGCACTGGCTGATGCTCCGTGGCTG 1840
Query 1027 -------------------------------------------------------------------------- 1026
Sbjct 1841 TTCTCAAGTTGGGTCGTGGTGTGGGAGCTTCTCATGGCGCGTGCGCTGGCCGCCGGAACCCACAAGTGCCTCTC 1914
Query 1027 -------------------------------------------------------------------------- 1026
Sbjct 1915 TGTGCAGTGAGGGAAGGGGCAGCGCATGTCAGCAGCATTGATCTGTGACTGCCCCCCCAGGACCAGAATTGGGG 1988
Query 1027 -------------------------------------------------------------------------- 1026
Sbjct 1989 TCATCTGGGGCTGGGAGACAATGGACACACTGAGGAGGGAGGCTGTGTGAGCTGCAGAGGGTGCATTTGTGCTG 2062
Query 1027 -------------------------------------------------------------------------- 1026
Sbjct 2063 GATTCTGAGCCGCCGTGTTGTCCACAGACCATGCTGCCTGTGGGCTGTGTCCGCATCATCCCTTACAGCAGCCA 2136
Query 1027 -------------------------------------------------------------------------- 1026
Sbjct 2137 GTATGAGGAGGCCTATCGCTGCAACTTCCTGGGGCTCAGCCCTCCCGTGCCTATCCCTGCCCATGTTCTGGCCT 2210
Query 1027 -------------------------------------------------------------------------- 1026
Sbjct 2211 CAGAGTTCGTAGTTGTCGTGGAGGTCCACACGGCCACTCGCTCAAACCTCCACCCTGCTGGGTGCGAGGATGAC 2284
Query 1027 -------------------------------------------------------------------------- 1026
Sbjct 2285 CAGTCCCTCAGCAAGTATGAGTTTGTGGTGACCAGTGGTAGCCCTGTGGCTGCAGACAGAGTTGGGCCCACTAT 2358
Query 1027 -------------------------------------------------------------------------- 1026
Sbjct 2359 CCTGAATAAGATTGAAGCAGCTCTGACCAACCAGAACCTGTCTGTGGATGTGGTGGACCAATGTCTCATCTGCC 2432
Query 1027 -------------------------------------------------------------------------- 1026
Sbjct 2433 TCAAGGAGGAATGGATGAACAAAGTGAAAGTCCTGTTTAAATTCACCAAGGTAGACAGTCGCCCCAAGGAGGAC 2506
Query 1027 -------------------------------------------------------------------------- 1026
Sbjct 2507 ACACAGAAGCTCCTAAGCGTCCTAGGCGCATCAGAGGAGGACAACGTCAAACTGCTGAAGTTCTGGATGACGGG 2580
Query 1027 -------------------------------------------------------------------------- 1026
Sbjct 2581 ACTGAGCAAAACCTACAAGTCCCATCTCATGTCCACCGTCCGAAGCCCCACAGCTACAGAGTCACGGAGCTGAC 2654
Query 1027 -------------------------------------------------------------------------- 1026
Sbjct 2655 TCCGAGAACTCCTTCTGGAAGGTGGTGTACAGACCAGCTCTGTGGGAAAAACTGCCCTTGGGTTTCTGACTTCT 2728
Query 1027 -------------------------------------------------------------------------- 1026
Sbjct 2729 GGGGTGAGGCCCTGTTTATGGCCTAGGGTTCACCCTCCTTGTAAGACTCTATCAGCCCATGTTGAAATGTAGGG 2802
Query 1027 -------------------------------------------------------------------------- 1026
Sbjct 2803 GACACAGAGACAGTGGTCCCTTTGCATCAAACTGCGCTGTCAGGACCTGGCGAGATGTGTTCTGTGCCCCGTGA 2876
Query 1027 -------------------------------------------------------------------------- 1026
Sbjct 2877 GGACAAAGGCTGGGAACTGAGAGGAGTCCATCAGTCTGCCTCTGAGGTTTTGTTGTTGGAGCGTGTCCTCATGG 2950
Query 1027 -------------------------------------------------------------------------- 1026
Sbjct 2951 GGTTAGGACAACGCCTTCCCACCATGGAAGACAGCAAGCATCGTGGATCATTTGTCTTTCGGTTGGTGACTTCT 3024
Query 1027 -------------------------------------------------------------------------- 1026
Sbjct 3025 CAGGTCACGTGCACAGCCGTGGCCTCTGCACATCTTGCCGGCCTGTGGATACATCAAAACCATGGCTGTTTTGT 3098
Query 1027 -------------------------------------------------------------------------- 1026
Sbjct 3099 TTGCTTTTGTTTTTTTTTAATTTTGGTTTTTGAGTCAGGGTCTTATTCTGTATCCTATCCCAGTTTAGAACTCA 3172
Query 1027 -------------------------------------------------------------------------- 1026
Sbjct 3173 TGGTGTGGCCTCTGCTACTTCCAGACTTGTAGCAATCCTCCTGCCTCAGCCTCCCAAGTGCTGGGATTACCGAA 3246
Query 1027 -------------------------------------------------------------------------- 1026
Sbjct 3247 CTGAGCCATCAGAACATTACATTGCTTTCTTCTCTGTTGCTGCCGTAGCGCTAACCAGCCACTGTAGACTATGA 3320
Query 1027 -------------------------------------------------------------------------- 1026
Sbjct 3321 CGGTGTTACGACAGATCGCCTCTCACCATTGCAGTTTAATAAGGACGTAGCTTGGAAAGATTTCCTGAAAGCTT 3394
Query 1027 -------------------------------------------------------------------------- 1026
Sbjct 3395 TCCCAATTTGTTTTTATAATATTCTTGGTGTTTGTTTATATTTAACATGAAGACTGTGTATCTCAGTCTCTGTA 3468
Query 1027 --------------------------------------------- 1026
Sbjct 3469 CAGTTGCAAGAATGTTGAAACACAATAAATCTGTATTTTTGTAAA 3513
