Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_05577
- Subject:
- NR_146079.1
- Aligned Length:
- 2945
- Identities:
- 594
- Gaps:
- 2261
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTCCCGGGGCCCGAAGTTGTTTTCCGAGGCGCGGCGGCGAGGACAGCGGCCCGGGGTGCGCCCCCTTTGTCTGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCCCGGCCGGCGCCGCGTCCCCGCGCGCTTACCTGGTCTTGGAGGACAGGAAGAGACGGGGTTTCGCCATGTCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGAGCTGCCCGCCTCAGCCTCCCAAAATTCTGGGATTACAGTA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAGATGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTGCTGATCTTGATCTCGTGATCTGCCTACCTCAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCTCCCAGAGTGCTGGGATTACAGGCGTCAGCCACCGCACCTGACCAGGAGTGGATTTTATATCTAAAGCTACA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GTTTAAACCACAAGGGCATCTGCTAAATACCACCCAAGGAGAAGCTAAGTTGTCAAAATGCCCACTCAACCCTC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCAAACATCGCAAACCCACCCTTTTCTGATCTCTACTCCAACGTCTTTTGTTTTTGTTCTGTCTTACACCAGGA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GAAGAGAGAGATTCGTGTTGACAAGTCCTTGTTGTCCAGACTCACACGGATACAGCTGTGGGGAAGGAAGGAAG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCTGCAATGCTGCTGTTTCCATGAACATGCCTGGCACCCTCCAGGTGTCAGCAGGGCCAGGGGAGTGGAGAACT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GGTCTCCCTCTCCGCTCCTCTACAGAACACAGTAGTACTGGACTCTGAAACGGGCATGTACAGAGAAGAGGAGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CCCCAACACGCTTCAAGCTTTGAGTGGAGAGGACACAGCCTCTGCTGGGACAGGGAACAGAGGGATGCGGAGAC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CCTGAAGATGCTTTTGGACAGTGGTCTGAGGTTGGGACAGTGGCAGGAGATACCATTCACCCAGGATCTCCAGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 ACAAGAGATCAGCCTGGCAGTTACATGTGTTTTTTTTCAAACTGGTTGCCAGGTTGGCATGAGCGATGACATCA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GAGATTCCGACCTTCCTGATTGGAGGGACCGGACTCTGTCGGCACCTGGGAGTTCAGTTGGACAACAGTAACTT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CTCAGAGCTGTTCTCCACTCCTGACTTCTCCCAGCCTCGAGAATTGATAACACACTCTTCTGGATCCCAGCAGT 1110
Query 1 ------------------------------------------------------------------------AT 2
||
Sbjct 1111 GTCCAGAAGAAGACCAAGGACAGAACAGAGACTAGGTTTGGTGAGATGGGACAGATTTTGGGAAAGATCATGAT 1184
Query 3 G-GCCAGTGGTCAAGCGC-GCCCCCCGTTTGAGGAGGA---GAGCCCCCAGCCTAGCAC--AACGGTACGGTCC 69
| |||| ||||.||| ||||| ||||.|| |||||||||||..||||| .|.||||| ||
Sbjct 1185 GAGCCA----TCAACCGCAGCCCC-------AGGAAGAGCGGAGCCCCCAGCGGAGCACCTCAGGGTAC---CC 1244
Query 70 CC-CGAGGTGGTGGTGGATGATGAAGTGCCAGGACCATCAGCCCCTTGGATAGATCCCAGCCCCCAGCCTCAAT 142
|| |.|||.|||||||||||||||||||.|.|||||||||||||||.||.|||||||||||||||..|.|...|
Sbjct 1245 CCTCCAGGAGGTGGTGGATGATGAAGTGTCGGGACCATCAGCCCCTGGGGTAGATCCCAGCCCCCCACGTAGGT 1318
Query 143 CCCTTGGCCTGAAAAGGAAGAGCGAATGGTCAGACGAATCCGAGGAGGAGCTGGAGGAGGAGCTGGAGTTGGAG 216
||||||||..||||||||||||.|||||.|..||.|||||.||.||.||||..|||.|||||||
Sbjct 1319 CCCTTGGCTGGAAAAGGAAGAGAGAATGTTTGGATGAATCTGATGATGAGCCAGAGAAGGAGCT---------- 1382
Query 217 CGCGCCCCTGAGCCCGAGGACACCTGGGTGGTGGAGACGCTGTGTGGGCTCAAGATGAAGCTGAAGCGAAAGCG 290
||||||||||||.|||||.||||||||||.|||||||||||||||.||||||||||||..|||||||..|||
Sbjct 1383 --CGCCCCTGAGCCTGAGGAGACCTGGGTGGCGGAGACGCTGTGTGGCCTCAAGATGAAGGCGAAGCGACGGCG 1454
Query 291 AGCATC-CTCCGTGCTCCCTGAGCACCACGAGGCCTTCAACAGGCTCCTTGGGGATCCTGTCGTTCAAAAATTC 363
||..|| || |||||||||||||.||.|||||||||||||||||||.||||.||||||||||.||.|||.|.||
Sbjct 1455 AGTGTCGCT-CGTGCTCCCTGAGTACTACGAGGCCTTCAACAGGCTGCTTGAGGATCCTGTCATTAAAAGACTC 1527
Query 364 CTGGCCTGGGACAAAGACCTGAGGGTGTCAGACAAGTATCTCCTGGCTATGGTCATAGCGTATTTTAGCCGTGC 437
|||||||||||||||||.|||||||||||.|||||||||||||||||||||||||||||||||||.|||||.||
Sbjct 1528 CTGGCCTGGGACAAAGATCTGAGGGTGTCGGACAAGTATCTCCTGGCTATGGTCATAGCGTATTTCAGCCGGGC 1601
Query 438 CGGCCTCTTCTCGTGGCAATACCAACGCATTCATTTCTTCCTGGCTCTCTACCTGGCCAGTGACATGGAGGAGG 511
|||||||..|||.||||||||||||||||||||||||||||||||||||||.|||||||.||||||||||||||
Sbjct 1602 CGGCCTCCCCTCCTGGCAATACCAACGCATTCATTTCTTCCTGGCTCTCTATCTGGCCAATGACATGGAGGAGG 1675
Query 512 ACAACCAGGCCCCGAAACAAGACATCTTCTCCTTCCTCTACG-------------------------------- 553
||.||.|||||||.||||||.|||||||||.||||||.||||
Sbjct 1676 ACGACGAGGCCCCCAAACAAAACATCTTCTACTTCCTGTACGAGGAGACCCGCTCTCATATACCCTTGCTCAGT 1749
Query 554 -------------------------------------------GGAAGAACTACTCCCAGCGACCCTTGTTCCA 584
|||||||||.|||.|||..|.|||||||||.
Sbjct 1750 GAGCTTTGGTTCCAGTTATGCCGTTACATGAACCCGAGGGCCAGGAAGAACTGCTCTCAGATAGCCTTGTTCCG 1823
Query 585 TAAGCTTCGATACCAGCTCCTCTGTTCCATGCGCTGGAGGACGTGGGTTTCCCCAGAGGAGATGGAGGAGATCC 658
.|||..|||.|.|||..||.|.||||||||||||||.|||.|.||||||||||..||||||.||||.|||||||
Sbjct 1824 GAAGTATCGGTTCCACTTCTTTTGTTCCATGCGCTGCAGGGCTTGGGTTTCCCTGGAGGAGTTGGAAGAGATCC 1897
Query 659 AGGCTTATGACCCAGAGCACTGGGTGTGGGCCCGAGATCGCACCCTCATTTCC--------------------- 711
|||||||||||||||||||||||||||||||.|||||||||.|||.|.|||||
Sbjct 1898 AGGCTTATGACCCAGAGCACTGGGTGTGGGCGCGAGATCGCGCCCACCTTTCCTAGAGCTCCAGGGACCGTGGA 1971
Query 712 -------------------------------------------------------------------------- 711
Sbjct 1972 GGCCTGAGGTCATCGGCCTGAGAGAAGAACACCGGACCCAGGGGAGATGTGGATTTTCAGCAGGAACTTTATTC 2045
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2046 CAATGCTAATGGCAGACATCAGGAAGGAGGAGAGGAACCATTTGTGCAGATCATCTAGAAGAACCTGGACCATT 2119
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2120 CTTGACAGAGCTGAATACAGTGATCACGTTGTCCTCCAAGGAGCAGGGGTGGGGTGGGGTACTTCTAGGAGTCC 2193
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2194 TTGGAGAAAAGTAAGAAACCAGGAGTGTTTCCAGTTCCACCCTTTCCTGCGGCACCACCTCCCTTTTTATATTG 2267
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2268 CTGAATGCCAACCTCCCTGGGGCGGAACCTGGAGGTCCTGTTTCTTATGGACTTGGTTGCCACAGTCCAGGAGC 2341
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2342 ATTTGAAGGCACAGTGCAGGGGCTCAGATTGGCACAGAATTCTTTGTGAAATATGAGTGCCACAGACTGTAACA 2415
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2416 GATAGCTTCATGCACACTATGCATTTTATTGGTTTGTTTGGAAAATGTTGGCCATTGAATTATTAATAGGTTTA 2489
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2490 TTTCAAATAGTTTGGAAATTGTTGTACTTTTGAAAACATGCTGTTCCTGTAGAGTTTTTTGATGAGAGTTATAG 2563
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2564 TTGTTATATATACCTAAAGATAATTTTCTTTTCATTTTTAAGTGAGAATTCTTTTTATCCTAAATCTTTTATTA 2637
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2638 TCTTTAAATTTTTTTCTGTATTATTATATGTGCTCCTGAAGCGAGCACTCTTTTTATCTATGATACTTCCATAA 2711
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2712 TAATCTCTTCTATTTATAGCTATTGGTAGTTCCCCACCAGAAAAAAACATAATTCTGGTGATAGAAATTTTTAT 2785
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2786 TTGCTGTTTAGGTTTGTGACTGACTTGTGAGAATTCAGTTGTGATTTTTAACATGTCTCAGATATATATACTAA 2859
Query 712 ----------------------------------------------------------- 711
Sbjct 2860 CACGTCTAATATATACTATCTATTTTATTGGTTTATTTTGAAAAACATGGGTATAGAAT 2918
