Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_05577
Subject:
NR_146079.1
Aligned Length:
2945
Identities:
594
Gaps:
2261

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CTCCCGGGGCCCGAAGTTGTTTTCCGAGGCGCGGCGGCGAGGACAGCGGCCCGGGGTGCGCCCCCTTTGTCTGT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCCCGGCCGGCGCCGCGTCCCCGCGCGCTTACCTGGTCTTGGAGGACAGGAAGAGACGGGGTTTCGCCATGTCA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGAGCTGCCCGCCTCAGCCTCCCAAAATTCTGGGATTACAGTA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GAGATGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTGCTGATCTTGATCTCGTGATCTGCCTACCTCAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CCTCCCAGAGTGCTGGGATTACAGGCGTCAGCCACCGCACCTGACCAGGAGTGGATTTTATATCTAAAGCTACA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GTTTAAACCACAAGGGCATCTGCTAAATACCACCCAAGGAGAAGCTAAGTTGTCAAAATGCCCACTCAACCCTC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CCAAACATCGCAAACCCACCCTTTTCTGATCTCTACTCCAACGTCTTTTGTTTTTGTTCTGTCTTACACCAGGA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GAAGAGAGAGATTCGTGTTGACAAGTCCTTGTTGTCCAGACTCACACGGATACAGCTGTGGGGAAGGAAGGAAG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GCTGCAATGCTGCTGTTTCCATGAACATGCCTGGCACCCTCCAGGTGTCAGCAGGGCCAGGGGAGTGGAGAACT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GGTCTCCCTCTCCGCTCCTCTACAGAACACAGTAGTACTGGACTCTGAAACGGGCATGTACAGAGAAGAGGAGA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CCCCAACACGCTTCAAGCTTTGAGTGGAGAGGACACAGCCTCTGCTGGGACAGGGAACAGAGGGATGCGGAGAC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CCTGAAGATGCTTTTGGACAGTGGTCTGAGGTTGGGACAGTGGCAGGAGATACCATTCACCCAGGATCTCCAGG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  ACAAGAGATCAGCCTGGCAGTTACATGTGTTTTTTTTCAAACTGGTTGCCAGGTTGGCATGAGCGATGACATCA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GAGATTCCGACCTTCCTGATTGGAGGGACCGGACTCTGTCGGCACCTGGGAGTTCAGTTGGACAACAGTAACTT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CTCAGAGCTGTTCTCCACTCCTGACTTCTCCCAGCCTCGAGAATTGATAACACACTCTTCTGGATCCCAGCAGT  1110

Query    1  ------------------------------------------------------------------------AT  2
                                                                                    ||
Sbjct 1111  GTCCAGAAGAAGACCAAGGACAGAACAGAGACTAGGTTTGGTGAGATGGGACAGATTTTGGGAAAGATCATGAT  1184

Query    3  G-GCCAGTGGTCAAGCGC-GCCCCCCGTTTGAGGAGGA---GAGCCCCCAGCCTAGCAC--AACGGTACGGTCC  69
            | ||||    ||||.||| |||||       ||||.||   |||||||||||..|||||  .|.|||||   ||
Sbjct 1185  GAGCCA----TCAACCGCAGCCCC-------AGGAAGAGCGGAGCCCCCAGCGGAGCACCTCAGGGTAC---CC  1244

Query   70  CC-CGAGGTGGTGGTGGATGATGAAGTGCCAGGACCATCAGCCCCTTGGATAGATCCCAGCCCCCAGCCTCAAT  142
            || |.|||.|||||||||||||||||||.|.|||||||||||||||.||.|||||||||||||||..|.|...|
Sbjct 1245  CCTCCAGGAGGTGGTGGATGATGAAGTGTCGGGACCATCAGCCCCTGGGGTAGATCCCAGCCCCCCACGTAGGT  1318

Query  143  CCCTTGGCCTGAAAAGGAAGAGCGAATGGTCAGACGAATCCGAGGAGGAGCTGGAGGAGGAGCTGGAGTTGGAG  216
            ||||||||..||||||||||||.|||||.|..||.|||||.||.||.||||..|||.|||||||          
Sbjct 1319  CCCTTGGCTGGAAAAGGAAGAGAGAATGTTTGGATGAATCTGATGATGAGCCAGAGAAGGAGCT----------  1382

Query  217  CGCGCCCCTGAGCCCGAGGACACCTGGGTGGTGGAGACGCTGTGTGGGCTCAAGATGAAGCTGAAGCGAAAGCG  290
              ||||||||||||.|||||.||||||||||.|||||||||||||||.||||||||||||..|||||||..|||
Sbjct 1383  --CGCCCCTGAGCCTGAGGAGACCTGGGTGGCGGAGACGCTGTGTGGCCTCAAGATGAAGGCGAAGCGACGGCG  1454

Query  291  AGCATC-CTCCGTGCTCCCTGAGCACCACGAGGCCTTCAACAGGCTCCTTGGGGATCCTGTCGTTCAAAAATTC  363
            ||..|| || |||||||||||||.||.|||||||||||||||||||.||||.||||||||||.||.|||.|.||
Sbjct 1455  AGTGTCGCT-CGTGCTCCCTGAGTACTACGAGGCCTTCAACAGGCTGCTTGAGGATCCTGTCATTAAAAGACTC  1527

Query  364  CTGGCCTGGGACAAAGACCTGAGGGTGTCAGACAAGTATCTCCTGGCTATGGTCATAGCGTATTTTAGCCGTGC  437
            |||||||||||||||||.|||||||||||.|||||||||||||||||||||||||||||||||||.|||||.||
Sbjct 1528  CTGGCCTGGGACAAAGATCTGAGGGTGTCGGACAAGTATCTCCTGGCTATGGTCATAGCGTATTTCAGCCGGGC  1601

Query  438  CGGCCTCTTCTCGTGGCAATACCAACGCATTCATTTCTTCCTGGCTCTCTACCTGGCCAGTGACATGGAGGAGG  511
            |||||||..|||.||||||||||||||||||||||||||||||||||||||.|||||||.||||||||||||||
Sbjct 1602  CGGCCTCCCCTCCTGGCAATACCAACGCATTCATTTCTTCCTGGCTCTCTATCTGGCCAATGACATGGAGGAGG  1675

Query  512  ACAACCAGGCCCCGAAACAAGACATCTTCTCCTTCCTCTACG--------------------------------  553
            ||.||.|||||||.||||||.|||||||||.||||||.||||                                
Sbjct 1676  ACGACGAGGCCCCCAAACAAAACATCTTCTACTTCCTGTACGAGGAGACCCGCTCTCATATACCCTTGCTCAGT  1749

Query  554  -------------------------------------------GGAAGAACTACTCCCAGCGACCCTTGTTCCA  584
                                                       |||||||||.|||.|||..|.|||||||||.
Sbjct 1750  GAGCTTTGGTTCCAGTTATGCCGTTACATGAACCCGAGGGCCAGGAAGAACTGCTCTCAGATAGCCTTGTTCCG  1823

Query  585  TAAGCTTCGATACCAGCTCCTCTGTTCCATGCGCTGGAGGACGTGGGTTTCCCCAGAGGAGATGGAGGAGATCC  658
            .|||..|||.|.|||..||.|.||||||||||||||.|||.|.||||||||||..||||||.||||.|||||||
Sbjct 1824  GAAGTATCGGTTCCACTTCTTTTGTTCCATGCGCTGCAGGGCTTGGGTTTCCCTGGAGGAGTTGGAAGAGATCC  1897

Query  659  AGGCTTATGACCCAGAGCACTGGGTGTGGGCCCGAGATCGCACCCTCATTTCC---------------------  711
            |||||||||||||||||||||||||||||||.|||||||||.|||.|.|||||                     
Sbjct 1898  AGGCTTATGACCCAGAGCACTGGGTGTGGGCGCGAGATCGCGCCCACCTTTCCTAGAGCTCCAGGGACCGTGGA  1971

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 1972  GGCCTGAGGTCATCGGCCTGAGAGAAGAACACCGGACCCAGGGGAGATGTGGATTTTCAGCAGGAACTTTATTC  2045

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 2046  CAATGCTAATGGCAGACATCAGGAAGGAGGAGAGGAACCATTTGTGCAGATCATCTAGAAGAACCTGGACCATT  2119

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 2120  CTTGACAGAGCTGAATACAGTGATCACGTTGTCCTCCAAGGAGCAGGGGTGGGGTGGGGTACTTCTAGGAGTCC  2193

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 2194  TTGGAGAAAAGTAAGAAACCAGGAGTGTTTCCAGTTCCACCCTTTCCTGCGGCACCACCTCCCTTTTTATATTG  2267

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 2268  CTGAATGCCAACCTCCCTGGGGCGGAACCTGGAGGTCCTGTTTCTTATGGACTTGGTTGCCACAGTCCAGGAGC  2341

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 2342  ATTTGAAGGCACAGTGCAGGGGCTCAGATTGGCACAGAATTCTTTGTGAAATATGAGTGCCACAGACTGTAACA  2415

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 2416  GATAGCTTCATGCACACTATGCATTTTATTGGTTTGTTTGGAAAATGTTGGCCATTGAATTATTAATAGGTTTA  2489

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 2490  TTTCAAATAGTTTGGAAATTGTTGTACTTTTGAAAACATGCTGTTCCTGTAGAGTTTTTTGATGAGAGTTATAG  2563

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 2564  TTGTTATATATACCTAAAGATAATTTTCTTTTCATTTTTAAGTGAGAATTCTTTTTATCCTAAATCTTTTATTA  2637

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 2638  TCTTTAAATTTTTTTCTGTATTATTATATGTGCTCCTGAAGCGAGCACTCTTTTTATCTATGATACTTCCATAA  2711

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 2712  TAATCTCTTCTATTTATAGCTATTGGTAGTTCCCCACCAGAAAAAAACATAATTCTGGTGATAGAAATTTTTAT  2785

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 2786  TTGCTGTTTAGGTTTGTGACTGACTTGTGAGAATTCAGTTGTGATTTTTAACATGTCTCAGATATATATACTAA  2859

Query  712  -----------------------------------------------------------  711
                                                                       
Sbjct 2860  CACGTCTAATATATACTATCTATTTTATTGGTTTATTTTGAAAAACATGGGTATAGAAT  2918

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