Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_05771
- Subject:
- NR_027673.1
- Aligned Length:
- 5073
- Identities:
- 2101
- Gaps:
- 2970
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTGAGGCGCTGAGGCGGCCGTGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCCAAGCGGCCAGGTTGGCGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGGGGCTCCGGGCCGCGCGAGGCCACGGCCACGCCGCGCCGCTGCGCACAACCAACGAGGCAGAGCGCCGCCCG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCGCGAGACTGCGGCCGAAGCGTGGGGCGCGCGTGCGGAGGACCAGGCGCGGCGCGGCTGCGGCTGAGAGTGGA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCCTTTCAGGCTGGCATGGAGAGCTTAAGGGGCAACTGAAGGAGACACACTGGCCAAGCGCGGAGTTCTGCTTA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTTCAGTCCTGCTGAGATACTCTCTCAGTCCGCTCGCACCGAAGGAAGCTGCCTTGGGATCAGAGCAGACATAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AGCTAGAAAAATTTCAAGATGAAATTGAAATGGCCAATGAGCACACCCTCATTCATCCAGCGAGCATTGAGGAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCCCTAGAGGCCAGGCCCATGAGTGATGAAGATCCCGAGGATGAAGACGCCTTGCCAGCCAGACAGAAACAGTC 518
Query 1 -----------------------------------ATGGATATAGAAGATGAAGAAAACATGAGTTCCAGCAGC 39
|||||||||||||||||||||||||||||||||||||||
Sbjct 519 TCCGCCAGTCAAGAAACCCTCAAAAGTATTTTGCCATGGATATAGAAGATGAAGAAAACATGAGTTCCAGCAGC 592
Query 40 ACTGATGTGAAGGAAAACCGCAATCTGGACAACGTGTCCCCCAAGGATGGCAGCACACCTGGGCCTGGCGAGGG 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ACTGATGTGAAGGAAAACCGCAATCTGGACAACGTGTCCCCCAAGGATGGCAGCACACCTGGGCCTGGCGAGGG 666
Query 114 CTCTCAGCTCTCCAATGGGGGTGGTGGTGGCCCCGGCAGAAAGCGGCCCCTGGAGGAGGGCAGCAATGGCCACT 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CTCTCAGCTCTCCAATGGGGGTGGTGGTGGCCCCGGCAGAAAGCGGCCCCTGGAGGAGGGCAGCAATGGCCACT 740
Query 188 CCAAGTACCGCCTGAAGAAAAGGAGGAAAACACCAGGGCCCGTCCTCCCCAAGAACGCCCTGATGCAGCTGAAT 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CCAAGTACCGCCTGAAGAAAAGGAGGAAAACACCAGGGCCCGTCCTCCCCAAGAACGCCCTGATGCAGCTGAAT 814
Query 262 GAGATCAAGCCTGGTTTGCAGTACACACTCCTGTCCCAGACTGGGCCCGTGCACGCGCCTTTGTTTGTCATGTC 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GAGATCAAGCCTGGTTTGCAGTACACACTCCTGTCCCAGACTGGGCCCGTGCACGCGCCTTTGTTTGTCATGTC 888
Query 336 TGTGGAGGTGAATGGCCAGGTTTTTGAGGGCTCTGGTCCCACAAAGAAAAAGGCAAAACTCCATGCTGCTGAGA 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TGTGGAGGTGAATGGCCAGGTTTTTGAGGGCTCTGGTCCCACAAAGAAAAAGGCAAAACTCCATGCTGCTGAGA 962
Query 410 AGGCCTTGAGGTCTTTCGTTCAGTTTCCTAATGCCTCTGAGGCCCACCTGGCCATGGGGAGGACCCTGTCTGTC 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AGGCCTTGAGGTCTTTCGTTCAGTTTCCTAATGCCTCTGAGGCCCACCTGGCCATGGGGAGGACCCTGTCTGTC 1036
Query 484 AACACGGACTTCACATCTGACCAGGCCGACTTCCCTGACACGCTCTTCAATGGTTTTGAAACTCCTGACAAGGC 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AACACGGACTTCACATCTGACCAGGCCGACTTCCCTGACACGCTCTTCAATGGTTTTGAAACTCCTGACAAGGC 1110
Query 558 GGAGCCTCCCTTTTACGTGGGCTCCAATGGGGATGACTCCTTCAGTTCCAGCGGGGACCTCAGCTTGTCTGCTT 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GGAGCCTCCCTTTTACGTGGGCTCCAATGGGGATGACTCCTTCAGTTCCAGCGGGGACCTCAGCTTGTCTGCTT 1184
Query 632 CCCCGGTGCCTGCCAGCCTAGCCCAGCCTCCTCTCCCTGCCTTACCACCATTCCCACCCCCGAGTGGGAAGAAT 705
|||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||
Sbjct 1185 CCCCGGTGCCTGCCAGCCTAGCCCAGCCTCCTCTCCCTGTCTTACCACCATTCCCACCCCCGAGTGGGAAGAAT 1258
Query 706 CCCGTGATGATCTTGAACGAACTGCGCCCAGGACTCAAGTATGACTTCCTCTCCGAGAGCGGGGAGAGCCATGC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CCCGTGATGATCTTGAACGAACTGCGCCCAGGACTCAAGTATGACTTCCTCTCCGAGAGCGGGGAGAGCCATGC 1332
Query 780 CAAGAGCTTCGTCATGTCTGTGGTCGTGGATGGTCAGTTCTTTGAAGGCTCGGGGAGAAACAAGAAGCTTGCCA 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 CAAGAGCTTCGTCATGTCTGTGGTCGTGGATGGTCAGTTCTTTGAAGGCTCGGGGAGAAACAAGAAGCTTGCCA 1406
Query 854 AGGCCCGGGCTGCGCAGTCTGCCCTGGCCGCCATTTTTAACTTGCACTTGGATCAGACGCCATCTCGCCAGCCT 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 AGGCCCGGGCTGCGCAGTCTGCCCTGGCCGCCATTTTTAACTTGCACTTGGATCAGACGCCATCTCGCCAGCCT 1480
Query 928 ATTCCCAGTGAGGGTCTTCAGCTGCATTTACCGCAGGTTTTAGCTGACGCTGTCTCACGCCTGGTCCTGGGTAA 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 ATTCCCAGTGAGGGTCTTCAGCTGCATTTACCGCAGGTTTTAGCTGACGCTGTCTCACGCCTGGTCCTGGGTAA 1554
Query 1002 GTTTGGTGACCTGACCGACAACTTCTCCTCCCCTCACGCTCGCAGAAAAGTGCTGGCTGGAGTCGTCATGACAA 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GTTTGGTGACCTGACCGACAACTTCTCCTCCCCTCACGCTCGCAGAAAAGTGCTGGCTGGAGTCGTCATGACAA 1628
Query 1076 CAGGCACAGATGTTAAAGATGCCAAGGTGATAAGTGTTTCTACAGGAACAAAATGTATTAATGGTGAATACATG 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 CAGGCACAGATGTTAAAGATGCCAAGGTGATAAGTGTTTCTACAGGAACAAAATGTATTAATGGTGAATACATG 1702
Query 1150 AGTGATCGTGGCCTTGCATTAAATGACTGCCATGCAGAAATAATATCTCGGAGATCCTTGCTCAGATTTCTTTA 1223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 AGTGATCGTGGCCTTGCATTAAATGACTGCCATGCAGAAATAATATCTCGGAGATCCTTGCTCAGATTTCTTTA 1776
Query 1224 TACACAACTTGAGCTTTACTTAAATAACAAAGATGATCAAAAAAGATCCATCTTTCAGAAATCAGAGCGAGGGG 1297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 TACACAACTTGAGCTTTACTTAAATAACAAAGATGATCAAAAAAGATCCATCTTTCAGAAATCAGAGCGAGGGG 1850
Query 1298 GGTTTAGGCTGAAGGAGAATGTCCAGTTTCATCTGTACATCAGCACCTCTCCCTGTGGAGATGCCAGAATCTTC 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 GGTTTAGGCTGAAGGAGAATGTCCAGTTTCATCTGTACATCAGCACCTCTCCCTGTGGAGATGCCAGAATCTTC 1924
Query 1372 TCACCACATGAGCCAATCCTGGAAGAACCAGCAGATAGACACCCAAATCGTAAAGCAAGAGGACAGCTACGGAC 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 TCACCACATGAGCCAATCCTGGAAGAACCAGCAGATAGACACCCAAATCGTAAAGCAAGAGGACAGCTACGGAC 1998
Query 1446 CAAAATAGAGTCTGGTGAGGGGACGATTCCAGTGCGCTCCAATGCGAGCATCCAAACGTGGGACGGGGTGCTGC 1519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 CAAAATAGAGTCTGGTGAGGGGACGATTCCAGTGCGCTCCAATGCGAGCATCCAAACGTGGGACGGGGTGCTGC 2072
Query 1520 AAGGGGAGCGGCTGCTCACCATGTCCTGCAGTGACAAGATTGCACGCTGGAACGTGGTGGGCATCCAGGGATCC 1593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 AAGGGGAGCGGCTGCTCACCATGTCCTGCAGTGACAAGATTGCACGCTGGAACGTGGTGGGCATCCAGGGATCC 2146
Query 1594 CTGCTCAGCATTTTCGTGGAGCCCATTTACTTCTCGAGCATCATCCTGGGCAGCCTTTACCACGGGGACCACCT 1667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 CTGCTCAGCATTTTCGTGGAGCCCATTTACTTCTCGAGCATCATCCTGGGCAGCCTTTACCACGGGGACCACCT 2220
Query 1668 TTCCAGGGCCATGTACCAGCGGATCTCCAACATAGAGGACCTGCCACCTCTCTACACCCTCAACAAGCCTTTGC 1741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 TTCCAGGGCCATGTACCAGCGGATCTCCAACATAGAGGACCTGCCACCTCTCTACACCCTCAACAAGCCTTTGC 2294
Query 1742 TCAGTGGCATCAGCAATGCAGAAGCACGGCAGCCAGGGAAGGCCCCCAACTTCAGTGTCAACTGGACGGTAGGC 1815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 TCAGTGGCATCAGCAATGCAGAAGCACGGCAGCCAGGGAAGGCCCCCAACTTCAGTGTCAACTGGACGGTAGGC 2368
Query 1816 GACTCCGCTATTGAGGTCATCAACGCCACGACTGGGAAGGATGAGCTGGGCCGCGCGTCCCGCCTGTGTAAGCA 1889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 GACTCCGCTATTGAGGTCATCAACGCCACGACTGGGAAGGATGAGCTGGGCCGCGCGTCCCGCCTGTGTAAGCA 2442
Query 1890 CGCGTTGTACTGTCGCTGGATGCGTGTGCACGGCAAGGTTCCCTCCCACTTACTACGCTCCAAGATTACCAAAC 1963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct 2443 CGCGTTGTACTGTCGCTGGATGCGTGTGCACGGCAAGGTTCCCTCCCACTTACTACGCTCCAAGATTACCAAGC 2516
Query 1964 CCAACGTGTACCATGAGTCCAAGCTGGCGGCAAAGGAGTACCAGGCCGCCAAGGCGCGTCTGTTCACAGCCTTC 2037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 CCAACGTGTACCATGAGTCCAAGCTGGCGGCAAAGGAGTACCAGGCCGCCAAGGCGCGTCTGTTCACAGCCTTC 2590
Query 2038 ATCAAGGCGGGGCTGGGGGCCTGGGTGGAGAAGCCCACCGAGCAGGACCAGTTCTCACTCACGCCC-------- 2103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 ATCAAGGCGGGGCTGGGGGCCTGGGTGGAGAAGCCCACCGAGCAGGACCAGTTCTCACTCACGCCCTGACCCGG 2664
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 2665 GCAGACATGATGGGGGGTGCAGGGGGCTGTGGGCATCCAGCGTCATCCTCCAGAACCTCACATCTGAACTGGGG 2738
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 2739 GCAGGTGCATACCTTGGGGAGGGAGTAGGGGGACACGGGGGACCACCAGGTGTCCACGGTTGTCCCCAGCATCT 2812
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 2813 CACATCAGACCTGGGGCAGGTGCGCAGTGTGGGGAGGGGATGGGGTGCGTCAGGGCCCAGCATCGCCGCCTGGC 2886
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 2887 ATCTCTCTGCCGCAGCATTTCCCCTTCTGAACCGTCCAGTGACTGCTTTCAATCTCGGTTTACGTTTAGAAATT 2960
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 2961 GAGTTCTACTGAGTAGGGCTTCCTTAAGTTTAGGAAAATAGAAATTACTTTGTGTGAAATTCTTGAATAAATAA 3034
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3035 TTTATTCAGAGCTAGGAATGTGGTTTATAAAATAGGAAGTAATTGTGTCAGGTCACTTTTATGCCACATTATTT 3108
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3109 TAATTGCAAAAAAGCATCTATATATGGAGGAGGGTGGGAAAATAGAGGTAGGAAATAGTAGCCTAAAGGAAATC 3182
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3183 GCCACACGTCTGTCTAAACTTAGGTCTCTTTTCTCCGTAGGTACCTCCCTGGGTAGTTCCACACACTAGGTTGT 3256
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3257 AACAGTCTCTCCCTGAGGAGCAGACTCCCAGCATGGTGTAGCGTGGCCCTGTCATGCACATGGGGTCCCGCAGC 3330
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3331 AGTGACTGTGTGTCCTGCAGAGGCGTGACCCAGGCCCCTGTAGCCCTCAGCCTCCTCTAGAAGCTTCTGTACTC 3404
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3405 CTTGTAGGATCAGATCATGGAAAACTTTTCTCAGTTTACTTCTAAGTAATCACAGATAATACATGGCCAGTAAT 3478
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3479 CCCAGGCTGGCCATTCATTCAGGTTTTTTAAAGGATATTTAACTTTTATGGACTAGAAGGAATCACGAGGGCTA 3552
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3553 CTGCACAATACATGGCCTAAGTTCCCTCTGTTCCTTCCTCTGAATCGAATGGATGTGGGTGACCGCCCGAAGGC 3626
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3627 CTTCACAGGATGGAAGTAGAATGATTTCAGTAGATACTCATTCTTGGAAAATGCCATAGTTTTAAATTATTGTT 3700
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3701 TCCAGCTTTATCAAAGACATGTTTGAAAAATAAAAAGCATCCAAGTGAGAGCTGGTGAGACCACGTGCTGCTGG 3774
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3775 CGTAGTGTAGGCCAGACATTGACAGTCCTGACGGGAGCTCAGGGCTGCCCAGCGCCCAGCGTGCACGGGACGGC 3848
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3849 CCCACGACAGAGGGAGTCAGCCCGGGAGGTCAGGAGCGCGGCGGGCGAGGGCCCTGTGTGGACCACCTCCACCA 3922
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3923 AGCTCAGAGATTTGCACCAGGTGCCTTGTTGCCTCCGCTCAGGATGAAAGAGGAGCTGAGAGAAGTGCTCTGCC 3996
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3997 TGCCAGTGCAGTGCCCAGCTCCAAGGCTCTAGAGGGTGTTCAGGTACACTGAGGAGGGGACGGCTCCGTCTTCA 4070
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 4071 CATTGTGCACAGATCTGAGGATGGGATTAGCGAAGCTGTGGAGACTGCACATCCGGACCTGCCCATGTCTCAAA 4144
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 4145 ACAAACACATGTACAGTGGCTCTTTTTCCTTCTCAAACACTTTACCCCAGAAGCAGGTGGTCTGCCCCAGGCAT 4218
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 4219 AAAGAAGGAAAATTGGCCATCTTTCCCACCTCTAAATTCTGTAAAATTATAGACTTGCTCAAAAGATTCCTTTT 4292
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 4293 TATCATCCCCACGCTGTGTAAGTGGAAAGGGCATTGTGTTCCGTGTGTGTCCAGTTTACAGCGTCTCTGCCCCC 4366
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 4367 TAGCGTGTTTTGTGACAATCTCCCTGGGTGAGGAGTGGGTGCACCCAGCCCCGAGGCCAGTGGTTGCTCGGGGC 4440
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 4441 CTTCCGTGTGAGTTCTAGTGTTCACTTGATGCCGGGGAATAGAATTAGAGAAAACTCTGACCTGCCGGGTTCCA 4514
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 4515 GGGACTGGTGGAGGTGGATGGCAGGTCCGACTCGACCATGACTTAGTTGTAAGGGTGTGTCGGCTTTTTCAGTC 4588
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 4589 TCATGTGAAAATCCTCCTGTCTCTGGCAGCACTGTCTGCACTTTCTTGTTTACTGTTTGAAGGGACGAGTACCA 4662
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 4663 AGCCACAAGAACACTTCTTTTGGCCACAGCATAAGCTGATGGTATGTAAGGAACCGATGGGCCATTAAACATGA 4736
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 4737 ACTGAACGGTTAAAAGCACAGTCTATGGAACGCTAATGGAGTCAGCCCCTAAAGCTGTTTGCTTTTTCAGGCTT 4810
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 4811 TGGATTACATGCTTTTAATTTGATTTTAGAATCTGGACACTTTCTATGAATGTAATTCGGCTGAGAAACATGTT 4884
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 4885 GCTGAGATGCAATCCTCAGTGTTCTCTGTATGTAAATCTGTGTATACACCACACGTTACAACTGCATGAGCTTC 4958
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 4959 CTCTCGCACAAGACCAGCTGGAACTGAGCATGAGACGCTGTCAAATACAGACAAAGGATTTGAGATGTTCTCAA 5032
Query 2104 ----------------------------------------- 2103
Sbjct 5033 TAAAAAGAAAATGTTTCACTACTCAAAAAAAAAAAAAAAAA 5073
