Construct: ORF ccsbBroadEn_05771

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011074.1_s300c1, BRDN0000457031
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ADARB1 (104)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 104 ADARB1 adenosine deaminase RNA spe... NM_001112.4 99.9% 99.8% 671T>C;1962G>A
2 human 104 ADARB1 adenosine deaminase RNA spe... XM_017028255.1 99.9% 99.8% 671T>C;1962G>A
3 human 104 ADARB1 adenosine deaminase RNA spe... NM_001160230.2 96% 95.7% (many diffs)
4 human 104 ADARB1 adenosine deaminase RNA spe... NM_001346688.1 96% 95.7% (many diffs)
5 human 104 ADARB1 adenosine deaminase RNA spe... NM_015833.4 94.5% 94.4% 671T>C;1395_1514del;2082G>A
6 human 104 ADARB1 adenosine deaminase RNA spe... XM_017028247.1 94.5% 94.4% 671T>C;1395_1514del;2082G>A
7 human 104 ADARB1 adenosine deaminase RNA spe... XM_017028248.1 94.5% 94.4% 671T>C;1395_1514del;2082G>A
8 human 104 ADARB1 adenosine deaminase RNA spe... XM_017028249.1 94.5% 94.4% 671T>C;1395_1514del;2082G>A
9 human 104 ADARB1 adenosine deaminase RNA spe... XM_017028250.1 94.5% 94.4% 671T>C;1395_1514del;2082G>A
10 human 104 ADARB1 adenosine deaminase RNA spe... XM_017028251.1 94.5% 94.4% 671T>C;1395_1514del;2082G>A
11 human 104 ADARB1 adenosine deaminase RNA spe... XM_017028245.2 93.3% 93.3% 1_147del;818T>C;2109G>A
12 human 104 ADARB1 adenosine deaminase RNA spe... XM_006723954.2 91% 91% (many diffs)
13 human 104 ADARB1 adenosine deaminase RNA spe... XM_017028243.1 91% 91% (many diffs)
14 human 104 ADARB1 adenosine deaminase RNA spe... NM_015834.4 90.8% 90.5% (many diffs)
15 human 104 ADARB1 adenosine deaminase RNA spe... XM_017028254.1 90.8% 90.5% (many diffs)
16 human 104 ADARB1 adenosine deaminase RNA spe... XM_011529425.2 90.7% 90.6% (many diffs)
17 human 104 ADARB1 adenosine deaminase RNA spe... XM_017028253.2 89.7% 89.4% (many diffs)
18 human 104 ADARB1 adenosine deaminase RNA spe... XM_017028242.2 88.6% 88.6% (many diffs)
19 human 104 ADARB1 adenosine deaminase RNA spe... XM_017028246.1 87.5% 87.2% (many diffs)
20 human 104 ADARB1 adenosine deaminase RNA spe... XM_024452043.1 85.7% 84% (many diffs)
21 human 104 ADARB1 adenosine deaminase RNA spe... XM_017028244.2 85.1% 84.9% (many diffs)
22 human 104 ADARB1 adenosine deaminase RNA spe... NM_001346687.2 81.4% 79.7% (many diffs)
23 human 104 ADARB1 adenosine deaminase RNA spe... NR_144483.2 57.7% (many diffs)
24 human 104 ADARB1 adenosine deaminase RNA spe... XM_011529432.1 46.5% 46.5% 0_1ins1068;327_446del;1014G>A
25 human 104 ADARB1 adenosine deaminase RNA spe... NR_027674.2 42.5% (many diffs)
26 human 104 ADARB1 adenosine deaminase RNA spe... XR_001754792.2 41.8% (many diffs)
27 human 104 ADARB1 adenosine deaminase RNA spe... NR_073200.2 41.5% (many diffs)
28 human 104 ADARB1 adenosine deaminase RNA spe... NR_027673.1 41.4% (many diffs)
29 human 104 ADARB1 adenosine deaminase RNA spe... XR_001754791.2 41.4% (many diffs)
30 human 104 ADARB1 adenosine deaminase RNA spe... XR_001754787.2 38.6% (many diffs)
31 human 104 ADARB1 adenosine deaminase RNA spe... XR_001754793.2 37.9% (many diffs)
32 human 104 ADARB1 adenosine deaminase RNA spe... NR_027672.2 32.2% (many diffs)
33 human 104 ADARB1 adenosine deaminase RNA spe... XR_001754786.2 31.2% (many diffs)
34 mouse 110532 Adarb1 adenosine deaminase, RNA-sp... NM_130895.3 87.7% 94.8% (many diffs)
35 mouse 110532 Adarb1 adenosine deaminase, RNA-sp... XM_006513065.1 86.7% 93.4% (many diffs)
36 mouse 110532 Adarb1 adenosine deaminase, RNA-sp... NM_001024837.2 86.5% 93.5% (many diffs)
37 mouse 110532 Adarb1 adenosine deaminase, RNA-sp... XM_006513064.1 85.6% 92.1% (many diffs)
38 mouse 110532 Adarb1 adenosine deaminase, RNA-sp... XM_006513063.3 80.3% 86.9% (many diffs)
39 mouse 110532 Adarb1 adenosine deaminase, RNA-sp... XM_006513062.3 79.3% 85.8% (many diffs)
40 mouse 110532 Adarb1 adenosine deaminase, RNA-sp... NR_021486.1 27.8% (many diffs)
41 mouse 110532 Adarb1 adenosine deaminase, RNA-sp... NR_004429.1 27.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2169
ORF length:
2103
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA TATAGAAGAT GAAGAAAACA TGAGTTCCAG CAGCACTGAT GTGAAGGAAA
121ACCGCAATCT GGACAACGTG TCCCCCAAGG ATGGCAGCAC ACCTGGGCCT GGCGAGGGCT
181CTCAGCTCTC CAATGGGGGT GGTGGTGGCC CCGGCAGAAA GCGGCCCCTG GAGGAGGGCA
241GCAATGGCCA CTCCAAGTAC CGCCTGAAGA AAAGGAGGAA AACACCAGGG CCCGTCCTCC
301CCAAGAACGC CCTGATGCAG CTGAATGAGA TCAAGCCTGG TTTGCAGTAC ACACTCCTGT
361CCCAGACTGG GCCCGTGCAC GCGCCTTTGT TTGTCATGTC TGTGGAGGTG AATGGCCAGG
421TTTTTGAGGG CTCTGGTCCC ACAAAGAAAA AGGCAAAACT CCATGCTGCT GAGAAGGCCT
481TGAGGTCTTT CGTTCAGTTT CCTAATGCCT CTGAGGCCCA CCTGGCCATG GGGAGGACCC
541TGTCTGTCAA CACGGACTTC ACATCTGACC AGGCCGACTT CCCTGACACG CTCTTCAATG
601GTTTTGAAAC TCCTGACAAG GCGGAGCCTC CCTTTTACGT GGGCTCCAAT GGGGATGACT
661CCTTCAGTTC CAGCGGGGAC CTCAGCTTGT CTGCTTCCCC GGTGCCTGCC AGCCTAGCCC
721AGCCTCCTCT CCCTGCCTTA CCACCATTCC CACCCCCGAG TGGGAAGAAT CCCGTGATGA
781TCTTGAACGA ACTGCGCCCA GGACTCAAGT ATGACTTCCT CTCCGAGAGC GGGGAGAGCC
841ATGCCAAGAG CTTCGTCATG TCTGTGGTCG TGGATGGTCA GTTCTTTGAA GGCTCGGGGA
901GAAACAAGAA GCTTGCCAAG GCCCGGGCTG CGCAGTCTGC CCTGGCCGCC ATTTTTAACT
961TGCACTTGGA TCAGACGCCA TCTCGCCAGC CTATTCCCAG TGAGGGTCTT CAGCTGCATT
1021TACCGCAGGT TTTAGCTGAC GCTGTCTCAC GCCTGGTCCT GGGTAAGTTT GGTGACCTGA
1081CCGACAACTT CTCCTCCCCT CACGCTCGCA GAAAAGTGCT GGCTGGAGTC GTCATGACAA
1141CAGGCACAGA TGTTAAAGAT GCCAAGGTGA TAAGTGTTTC TACAGGAACA AAATGTATTA
1201ATGGTGAATA CATGAGTGAT CGTGGCCTTG CATTAAATGA CTGCCATGCA GAAATAATAT
1261CTCGGAGATC CTTGCTCAGA TTTCTTTATA CACAACTTGA GCTTTACTTA AATAACAAAG
1321ATGATCAAAA AAGATCCATC TTTCAGAAAT CAGAGCGAGG GGGGTTTAGG CTGAAGGAGA
1381ATGTCCAGTT TCATCTGTAC ATCAGCACCT CTCCCTGTGG AGATGCCAGA ATCTTCTCAC
1441CACATGAGCC AATCCTGGAA GAACCAGCAG ATAGACACCC AAATCGTAAA GCAAGAGGAC
1501AGCTACGGAC CAAAATAGAG TCTGGTGAGG GGACGATTCC AGTGCGCTCC AATGCGAGCA
1561TCCAAACGTG GGACGGGGTG CTGCAAGGGG AGCGGCTGCT CACCATGTCC TGCAGTGACA
1621AGATTGCACG CTGGAACGTG GTGGGCATCC AGGGATCCCT GCTCAGCATT TTCGTGGAGC
1681CCATTTACTT CTCGAGCATC ATCCTGGGCA GCCTTTACCA CGGGGACCAC CTTTCCAGGG
1741CCATGTACCA GCGGATCTCC AACATAGAGG ACCTGCCACC TCTCTACACC CTCAACAAGC
1801CTTTGCTCAG TGGCATCAGC AATGCAGAAG CACGGCAGCC AGGGAAGGCC CCCAACTTCA
1861GTGTCAACTG GACGGTAGGC GACTCCGCTA TTGAGGTCAT CAACGCCACG ACTGGGAAGG
1921ATGAGCTGGG CCGCGCGTCC CGCCTGTGTA AGCACGCGTT GTACTGTCGC TGGATGCGTG
1981TGCACGGCAA GGTTCCCTCC CACTTACTAC GCTCCAAGAT TACCAAACCC AACGTGTACC
2041ATGAGTCCAA GCTGGCGGCA AAGGAGTACC AGGCCGCCAA GGCGCGTCTG TTCACAGCCT
2101TCATCAAGGC GGGGCTGGGG GCCTGGGTGG AGAAGCCCAC CGAGCAGGAC CAGTTCTCAC
2161TCACGCCCTG CCCAACTTTC TTGTACAAAG TTGGcattat aagaaagcat tgcttatcaa
2221tttgttgcaa cgaac

Download FASTA (ORF) (Full)