Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_05864
Subject:
NM_001290469.1
Aligned Length:
3120
Identities:
2481
Gaps:
141

Alignment

Query    1  ATGGGCCGTGGGGCTGGCCGTGAGTACTCACCTGCCGCCACCACGGCAGAGAATGGGGG----------CGGCA  64
                                                                |||||||          .|.||
Sbjct    1  ----------------------------------------------------ATGGGGGACAAAAAAGATGACA  22

Query   65  AG---------AAGAAACAG-AAGGAGAA---------GGAACTGGATGAGCTGAAGAAGGAGGTGGCAATGGA  119
            ||         ||| ||.|| ||||..||         |||.||||||||.||.||||||||.|||||.|||..
Sbjct   23  AGAGCTCGCCCAAG-AAGAGCAAGGCCAAAGAGCGCCGGGACCTGGATGACCTCAAGAAGGAAGTGGCTATGAC  95

Query  120  TGACCACAAGCTGTCCTTGGATGAGCTGGGCCGCAAATACCA-AGTGGACCT--GTCCAAGGGCCTCACCAAC-  189
            .||.||||||.||||..|.||.|||.|..||||.||||||.| |.||  .||  ||.| ||||.||.||  || 
Sbjct   96  AGAGCACAAGATGTCAGTAGAAGAGGTCTGCCGGAAATACAATACTG--ACTGCGTGC-AGGGTCTGAC--ACA  164

Query  190  CAG-CGGGCTCAGGACGTTCTGGCTCGAGATGGGCCCAACGCCCTCACACCACCTCCCACAACCCCTGAGTGGG  262
            ||| ...||.|||||..|.||.||.||.||||||||.|||||||||||||||||.|||||.|||||.||.||||
Sbjct  165  CAGTAAAGCCCAGGAGATCCTAGCCCGGGATGGGCCTAACGCCCTCACACCACCGCCCACCACCCCAGAATGGG  238

Query  263  TCAAGTTCTGCCGTCAGCTTTTCGGGGGGTTCTCCATCCTGCTGTGGATTGGGGCTATCCTCTGCTTCCTGGCC  336
            |||||||||||||.|||||.||.||.||.|||||.||||||||||||||.|||||.|||||.||||||||||||
Sbjct  239  TCAAGTTCTGCCGGCAGCTGTTTGGTGGCTTCTCTATCCTGCTGTGGATCGGGGCAATCCTTTGCTTCCTGGCC  312

Query  337  TACGGCATCCAGGCTGCCATGGAGGATGAACCATCCAACGACAATCTATATCTGGGTGTGGTGCTGGCAGCTGT  410
            ||.|||||||||||.|..|.|||||||||.||.|||...||||||||.||.|||||..|.||||||||.||.||
Sbjct  313  TATGGCATCCAGGCAGGGACGGAGGATGACCCTTCCGGTGACAATCTGTACCTGGGCATAGTGCTGGCCGCAGT  386

Query  411  GGTCATTGTCACTGGCTGCTTCTCCTACTACCAGGAGGCCAAGAGCTCCAAGATCATGGATTCCTTCAAGAACA  484
            .||.||..||||.||||||||||||||||||||.||.||||||||.||.|||||||||||.|||||||||||||
Sbjct  387  CGTGATCATCACCGGCTGCTTCTCCTACTACCAAGAAGCCAAGAGTTCTAAGATCATGGAGTCCTTCAAGAACA  460

Query  485  TGGTACCTCAGCAAGCCCTTGTGATCCGGGAGGGAGAGAAGATGCAGATCAACGCAGAGGAAGTGGTGGTGGGA  558
            ||||.||.|||||||||||||||||||||||.||.||.|||||||||.|.||.||.|||||.||||||||.||.
Sbjct  461  TGGTCCCCCAGCAAGCCCTTGTGATCCGGGAAGGTGAAAAGATGCAGGTGAATGCGGAGGAGGTGGTGGTCGGG  534

Query  559  GACCTGGTGGAGGTGAAGGGTGGAGACCGCGTCCCTGCTGACCTCCGGATCATCTCTTCTCATGGCTGTAAGGT  632
            ||||||||||||.|.||||||||.|||||.||.||.||||||||.||.||||||||..|.||||||||.|||||
Sbjct  535  GACCTGGTGGAGATCAAGGGTGGTGACCGGGTGCCAGCTGACCTGCGCATCATCTCGGCCCATGGCTGCAAGGT  608

Query  633  GGATAACTCATCCTTAACAGGAGAGTCGGAGCCCCAGACCCGCTCCCCCGAGTTCACCCATGAGAACCCCCTGG  706
            |||.|||||.|||.|.||.||.||.||.|||||.||||||||||||||.||.|.|||.||.||.||||||||||
Sbjct  609  GGACAACTCCTCCCTGACTGGCGAATCTGAGCCTCAGACCCGCTCCCCGGACTGCACACACGACAACCCCCTGG  682

Query  707  AGACCCGCAATATCTGTTTCTTCTCCACCAACTGTGTTGAAGGCACTGCCAGGGGCATTGTGATTGCCACAGGA  780
            ||||.||.||.|||...|||||.|||||||||||.||.||||||||.||..||||..|.|||.|.||||||||.
Sbjct  683  AGACTCGGAACATCACCTTCTTTTCCACCAACTGCGTGGAAGGCACCGCTCGGGGTGTGGTGGTAGCCACAGGT  756

Query  781  GACCGGACGGTGATGGGCCGCATAGCTACTCTCGCCTCAGGCCTGGAGGTTGGGC-GGACACCCATAGCAATGG  853
            |||||.||.||.|||||||||||.||.||.||.|||||.|||.|||||| ||||| .|||.|||||.||.||.|
Sbjct  757  GACCGCACCGTCATGGGCCGCATTGCCACCCTGGCCTCGGGCTTGGAGG-TGGGCAAGACGCCCATCGCCATTG  829

Query  854  AGATTGAACACTTCATCCAGCTGATCACAGGGGTCGCTGTATTCCTGGGGGTCTCCTTCTTCGTGCTCTCCCTC  927
            |||||||.||.|||||||||||.||.||.||.||.||.||.||||||||.||.|||||||||.|.|||||.|||
Sbjct  830  AGATTGAGCATTTCATCCAGCTCATTACGGGCGTGGCCGTGTTCCTGGGCGTGTCCTTCTTCATCCTCTCTCTC  903

Query  928  ATCCTGGGCTACAGCTGGCTGGAGGCAGTCATCTTCCTCATCGGCATCATAGTGGCCAACGTGCCTGAGGGGCT  1001
            ||.|||||.||||.||||||.|||||||||||||||||||||||||||||.||||||||.||.||.||||||||
Sbjct  904  ATTCTGGGTTACACCTGGCTCGAGGCAGTCATCTTCCTCATCGGCATCATTGTGGCCAATGTCCCAGAGGGGCT  977

Query 1002  TCTGGCCACTGTCACTGTGTGCCTGACCCTGACAGCCAAGCGCATGGCACGGAAGAACTGCCTGGTGAAGAACC  1075
            .|||||.||||||||.|||||.|||||.|||||.||||||||||||||.||.||||||||||||||||||||||
Sbjct  978  GCTGGCTACTGTCACGGTGTGTCTGACGCTGACCGCCAAGCGCATGGCTCGCAAGAACTGCCTGGTGAAGAACC  1051

Query 1076  TGGAGGCGGTGGAGACGCTGGGCTCCACGTCCACCATCTGCTCGGACAAGACGGGCACCCTCACCAAGAACCGC  1149
            ||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||.||||||.||||||||
Sbjct 1052  TGGAGGCGGTGGAGACGCTGGGCTCCACGTCCACCATCTGCTCGGACAAGACCGGCACTCTCACCCAGAACCGC  1125

Query 1150  ATGACCGTCGCCCACATGTGGTTCGACAACCAAATCCATGAGGCTGACACCACCGAAGATCAGTCTGGGGCCAC  1223
            |||||||||||||||||||||||.||||||||.|||||.|||||.||||||||.||.||||||||.|||.||.|
Sbjct 1126  ATGACCGTCGCCCACATGTGGTTTGACAACCAGATCCACGAGGCAGACACCACAGAGGATCAGTCAGGGACCTC  1199

Query 1224  TTTTGACAAACGATCCCCTACGTGGACGGCCCTGTCTCGAATTGCTGGTCTCTGCAACCGCGCCGTCTTCAAGG  1297
            |||.|||||..|.||.|..||.|||..|||||||||.|..||.||.||.|||||||||||.|||||||||||||
Sbjct 1200  TTTCGACAAGAGCTCACACACCTGGGTGGCCCTGTCCCACATCGCCGGGCTCTGCAACCGGGCCGTCTTCAAGG  1273

Query 1298  CAGGACAGGAGAACATCTCCGTGTCT-AAGCGGGACACAGCTGGTGATGCCTCTGAGTCAGCTCTGCTCAAGTG  1370
            ..||.|||||.||||||.|.|| .|| |||.|||||...||.|||||||||||.|||||.||.|||||.|||||
Sbjct 1274  GCGGGCAGGACAACATCCCAGT-ACTCAAGAGGGACGTGGCCGGTGATGCCTCCGAGTCTGCCCTGCTTAAGTG  1346

Query 1371  CATTGAGCTCTCCTGTGGCTCAGTGAGGAAA----ATGAGAG-ACAGAAACCCCAAG---GTGGCAGAGATTCC  1436
            |||||||||.||||..||.||.||    |||    |||.||| ||.|||    ||||   |||||.||||||||
Sbjct 1347  CATTGAGCTGTCCTCGGGTTCCGT----AAAGCTGATGCGAGAACGGAA----CAAGAAAGTGGCTGAGATTCC  1412

Query 1437  TTTCAACTCTACCAACAAGTACCAGCTGTCTATCCACGAG--CGAG-------AAGACAGCCCCCAGAGCCACG  1501
            .||||||||.||||||||.||||||||.||.|||||.|||  .|||       |.||||.||      |..||.
Sbjct 1413  GTTCAACTCGACCAACAAATACCAGCTATCCATCCATGAGACTGAGGATCCCAATGACAACC------GGTACC  1480

Query 1502  TGCTGGTGATGAAGGGGGCCCCAGAGCGCATTCTGGACCGGTGCTCCACCATCCTGGTGCAGGGCAAGGAGATC  1575
            ||||.|||||||||||.|||||.||.||||||||||||||.||..||||||||||..||||||||||||||...
Sbjct 1481  TGCTAGTGATGAAGGGCGCCCCCGAACGCATTCTGGACCGCTGTGCCACCATCCTCCTGCAGGGCAAGGAGCAG  1554

Query 1576  CCGCTCGACAAGGAGATGCAAGATGCCTTTCAAAATGCCTACATGGAGCTGGGGGGACTTGGGGAGCGTGTGCT  1649
            ||.||.||..||||||||.|.||.|||||.||.|||||||||.|||||||.||.||.||.||.|||||||||||
Sbjct 1555  CCTCTGGATGAGGAGATGAAGGAGGCCTTCCAGAATGCCTACCTGGAGCTTGGTGGCCTGGGCGAGCGTGTGCT  1628

Query 1650  GGGATTCTGTCA--ACTGAATCTGCCATCTGGAA-AGTTTCCTCGGGGCTTCAAATTCGACACGGATGAGCTGA  1720
            |||.|||||.||  |||  |.||||| |..|||| ||||.||...||||||....||.|||...|||||..|||
Sbjct 1629  GGGTTTCTGCCATTACT--ACCTGCC-TGAGGAACAGTTCCCCAAGGGCTTTGCCTTTGACTGTGATGACGTGA  1699

Query 1721  ACTTTCCCACGGAGAAGCTTTGCTTTGTGGGGCTCATGTCTATGATTGACCCTCCCCGGGCTGCTGTGCCAGAT  1794
            ||||..||||.||.||.||||||||||||||.||||||||.||||||||||||||||||||.||.||.||.||.
Sbjct 1700  ACTTCACCACAGACAACCTTTGCTTTGTGGGTCTCATGTCCATGATTGACCCTCCCCGGGCAGCCGTCCCTGAC  1773

Query 1795  GCTGTGGGCAAGTGCCGAAGCGCAGGCATCAAGGTGATCATGGTAACCGGGGATCACCCTATCACAGCCAAGGC  1868
            |||||||||||.|||||||||||||||||||||||.||||||||.|||||.||||||||.|||||.||||||||
Sbjct 1774  GCTGTGGGCAAATGCCGAAGCGCAGGCATCAAGGTCATCATGGTCACCGGCGATCACCCCATCACTGCCAAGGC  1847

Query 1869  CATTGCCAAAGGCGTGGGCATCATATCAGAGGGTAACGAGACTGTGGAGGACATTGCAGCCCGGCTCAACATTC  1942
            |||||||||.||.|||||.|||||.||.|||||||||||||||||.||.|||||.||.||||||||||||||.|
Sbjct 1848  CATTGCCAAGGGTGTGGGTATCATCTCTGAGGGTAACGAGACTGTCGAAGACATCGCTGCCCGGCTCAACATCC  1921

Query 1943  CCATGAGTCAAGTCAACCCCAGAGAAGCCAAGGCATGCGTGGTGCACGGCTCTGACCTGAAGGACATGACATCG  2016
            |..|.||.||.||.||||||||.||.|||||.||.||.|||.|.||||||.|.|||||.||||||.|.||.|||
Sbjct 1922  CTGTCAGCCAGGTGAACCCCAGGGATGCCAAAGCCTGTGTGATTCACGGCACCGACCTCAAGGACTTCACCTCG  1995

Query 2017  GAGCAGCTCGATGAGATCCTCAAGAACCACACAGAGATCGTCTTTGCTCGAACGTCTCCCCAGCAGAAGCTCAT  2090
            ||||||.|.||.|||||.||..||||||||||.||||||||||||||.|||||.||.||.||||||||||||||
Sbjct 1996  GAGCAGATTGACGAGATTCTGCAGAACCACACCGAGATCGTCTTTGCCCGAACCTCCCCTCAGCAGAAGCTCAT  2069

Query 2091  CATTGTGGAGGGATGTCAGAGGCAGGGAGCCATTGTGGCCGTGACGGGTGACGGGGTGAACGACTCCCCTGCAT  2164
            |||.||||||||.||||||||.||||||||.||||||||.|||||.||.||.||.|||||.|||||||||||..
Sbjct 2070  CATCGTGGAGGGCTGTCAGAGACAGGGAGCAATTGTGGCTGTGACTGGCGATGGTGTGAATGACTCCCCTGCTC  2143

Query 2165  TGAAGAAGGCTGACATTGGCATTGCCATGGGCATCTCTGGCTCTGACGTCTCTAAGCAGGCAGCCGACATGATC  2238
            ||||||||||||||||.||..|.|||||||||||..||||||||||.||||||||||||||.|||||||||||.
Sbjct 2144  TGAAGAAGGCTGACATCGGGGTGGCCATGGGCATTGCTGGCTCTGATGTCTCTAAGCAGGCTGCCGACATGATT  2217

Query 2239  CTGCTGGATGACAACTTTGCCTCCATCGTCACGGGGGTGGAGGAGGGCCGCCTGATCTTTGACAACTTGAAGAA  2312
            ||||||||||||||||||||.|||||.|||||.||.||||||||.|||||||||||||||||||||.|||||||
Sbjct 2218  CTGCTGGATGACAACTTTGCTTCCATTGTCACTGGTGTGGAGGAAGGCCGCCTGATCTTTGACAACCTGAAGAA  2291

Query 2313  ATCCATCGCCTACACCCTGACCAGCAACATCCCCGAGATCACCCCCTTCCTGCTGTTCATCATTGCCAACATCC  2386
            |||||||||||||||.|||||.|||||||||||.||||||||.|||||||||||.||||||||.||.|||||||
Sbjct 2292  ATCCATCGCCTACACTCTGACTAGCAACATCCCTGAGATCACACCCTTCCTGCTCTTCATCATGGCTAACATCC  2365

Query 2387  CCCTACCTCTGGGCACTGTGACCATCCTTTGCATTGACCTGGGCACAGATATGGTCCCTGCCATCTCCTTGGCC  2460
            |.||.|||||.|||||..|.||||||||.||||||||||||||.||.||.|||||||||||.||||||.|||||
Sbjct 2366  CACTGCCTCTTGGCACCATCACCATCCTCTGCATTGACCTGGGTACCGACATGGTCCCTGCAATCTCCCTGGCC  2439

Query 2461  TATGAGGCAGCTGAGAGTGATATCATGAAGCGGCAGCCACGAAACTCCCAGACGGACAAGCTGGTGAATGAGAG  2534
            ||.|||||.||.|||||.||.|||||||||.|||||||..|.|||.|.|..||.|||||.|||||.||.||.||
Sbjct 2440  TACGAGGCTGCCGAGAGCGACATCATGAAGAGGCAGCCCAGGAACCCACGCACAGACAAACTGGTCAACGAAAG  2513

Query 2535  GCTCATCAGCATGGCCTACGGACAGATCGGGATGATCCAGGCACTGGGTGGCTTCTTCACCTACTTTGTGATCC  2608
            |||||||||||||||||||||.|||||.||||||||||||||.||.|||||.||||||.||||||||||.||||
Sbjct 2514  GCTCATCAGCATGGCCTACGGGCAGATTGGGATGATCCAGGCCCTCGGTGGTTTCTTCTCCTACTTTGTCATCC  2587

Query 2609  TGGCAGAGAACGGTTTCCTGCCATCACGG----CTACTGGGAATCCGCCTCGACTGGGATGACCGGACCATGAA  2678
            |||||||.||.||.|||.||||    |||    ||..||||.|||||.|||.||||||||||.||.||..|.||
Sbjct 2588  TGGCAGAAAATGGCTTCTTGCC----CGGAAACCTGGTGGGCATCCGGCTCAACTGGGATGATCGCACTGTCAA  2657

Query 2679  TGATCTGGAGGACAGCTATGGACAGGAGTGGACCTATGAGCAGCGGAAGGTGGTGGAGTTCACGTGCCACACGG  2752
            |||.||.||.|||||.|||||.|||.|||||||.|||||||||.||||||||||.||||||||.||||||||.|
Sbjct 2658  TGACCTAGAAGACAGTTATGGGCAGCAGTGGACTTATGAGCAGAGGAAGGTGGTAGAGTTCACATGCCACACAG  2731

Query 2753  CATTCTTTGCCAGCATCGTGGTGGTGCAGTGGGCTGACCTCATCATCTGCAAGACCCGCCGCAACTCAGTCTTC  2826
            |.|||||||..||.|||||||||||.||||||||||||||.|||||||||||||||.|..|.|||||.||||||
Sbjct 2732  CCTTCTTTGTGAGTATCGTGGTGGTCCAGTGGGCTGACCTGATCATCTGCAAGACCAGGAGGAACTCCGTCTTC  2805

Query 2827  CAGCAGGGCATGAAGAACAAGATCCTGATTTTTGGGCTCCTGGAGGAGACGGCGTTGGCTGCCTTTCTCTCTTA  2900
            |||||||||||||||||.||||||.||||.||.||..|..|.|||||||||||..|.||||||||.||.||.||
Sbjct 2806  CAGCAGGGCATGAAGAATAAGATCTTGATCTTCGGCTTGTTTGAGGAGACGGCCCTCGCTGCCTTCCTGTCCTA  2879

Query 2901  CTGCCCAGGCATGGGTGTAGCCCTCCGCATGTACCCGCTCAAAGTCACCTGGTGGTTCTGCGCCTTCCCCTACA  2974
            ||||||||||||||.|||.|||||.|||||||||||.|||||...||.||||||||||||.|||||||||||||
Sbjct 2880  CTGCCCAGGCATGGATGTGGCCCTTCGCATGTACCCTCTCAAGCCCAGCTGGTGGTTCTGTGCCTTCCCCTACA  2953

Query 2975  GCCTCCTCATCTTCATCTATGATGAGGTCCGAAAGCTCATCCTGCGGCGGTATCCTGGTGGCTGGGTGGAGAAG  3048
            |..|||||||||||.|||||||||||.|.||.||.|||||||||||..||.|.||.||.||.|||||||||||.
Sbjct 2954  GTTTCCTCATCTTCGTCTATGATGAGATTCGCAAACTCATCCTGCGCAGGAACCCCGGGGGTTGGGTGGAGAAA  3027

Query 3049  GAGACATACTAC  3060
            |||||.|||||.
Sbjct 3028  GAGACCTACTAT  3039

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