Construct: ORF ccsbBroadEn_05864
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001604.1_s300c1, BRDN0000390452
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ATP1A2 (477)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 477 | ATP1A2 | ATPase Na+/K+ transporting ... | NM_000702.4 | 99.9% | 99.9% | 1141C>A |
| 2 | human | 478 | ATP1A3 | ATPase Na+/K+ transporting ... | NM_001256214.2 | 81.3% | 86.8% | (many diffs) |
| 3 | human | 478 | ATP1A3 | ATPase Na+/K+ transporting ... | NM_001256213.1 | 81.1% | 86.7% | (many diffs) |
| 4 | human | 478 | ATP1A3 | ATPase Na+/K+ transporting ... | NM_152296.5 | 80.8% | 86.8% | (many diffs) |
| 5 | mouse | 98660 | Atp1a2 | ATPase, Na+/K+ transporting... | NM_178405.3 | 90.3% | 99% | (many diffs) |
| 6 | mouse | 232975 | Atp1a3 | ATPase, Na+/K+ transporting... | XM_011250520.2 | 80.6% | 86.7% | (many diffs) |
| 7 | mouse | 232975 | Atp1a3 | ATPase, Na+/K+ transporting... | NM_001290469.1 | 79.5% | 86.7% | (many diffs) |
| 8 | mouse | 232975 | Atp1a3 | ATPase, Na+/K+ transporting... | XM_011250518.2 | 77.5% | 82.9% | (many diffs) |
| 9 | mouse | 232975 | Atp1a3 | ATPase, Na+/K+ transporting... | XM_011250519.2 | 76.4% | 82.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 3126
- ORF length:
- 3060
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG CCGTGGGGCT GGCCGTGAGT ACTCACCTGC CGCCACCACG GCAGAGAATG 121 GGGGCGGCAA GAAGAAACAG AAGGAGAAGG AACTGGATGA GCTGAAGAAG GAGGTGGCAA 181 TGGATGACCA CAAGCTGTCC TTGGATGAGC TGGGCCGCAA ATACCAAGTG GACCTGTCCA 241 AGGGCCTCAC CAACCAGCGG GCTCAGGACG TTCTGGCTCG AGATGGGCCC AACGCCCTCA 301 CACCACCTCC CACAACCCCT GAGTGGGTCA AGTTCTGCCG TCAGCTTTTC GGGGGGTTCT 361 CCATCCTGCT GTGGATTGGG GCTATCCTCT GCTTCCTGGC CTACGGCATC CAGGCTGCCA 421 TGGAGGATGA ACCATCCAAC GACAATCTAT ATCTGGGTGT GGTGCTGGCA GCTGTGGTCA 481 TTGTCACTGG CTGCTTCTCC TACTACCAGG AGGCCAAGAG CTCCAAGATC ATGGATTCCT 541 TCAAGAACAT GGTACCTCAG CAAGCCCTTG TGATCCGGGA GGGAGAGAAG ATGCAGATCA 601 ACGCAGAGGA AGTGGTGGTG GGAGACCTGG TGGAGGTGAA GGGTGGAGAC CGCGTCCCTG 661 CTGACCTCCG GATCATCTCT TCTCATGGCT GTAAGGTGGA TAACTCATCC TTAACAGGAG 721 AGTCGGAGCC CCAGACCCGC TCCCCCGAGT TCACCCATGA GAACCCCCTG GAGACCCGCA 781 ATATCTGTTT CTTCTCCACC AACTGTGTTG AAGGCACTGC CAGGGGCATT GTGATTGCCA 841 CAGGAGACCG GACGGTGATG GGCCGCATAG CTACTCTCGC CTCAGGCCTG GAGGTTGGGC 901 GGACACCCAT AGCAATGGAG ATTGAACACT TCATCCAGCT GATCACAGGG GTCGCTGTAT 961 TCCTGGGGGT CTCCTTCTTC GTGCTCTCCC TCATCCTGGG CTACAGCTGG CTGGAGGCAG 1021 TCATCTTCCT CATCGGCATC ATAGTGGCCA ACGTGCCTGA GGGGCTTCTG GCCACTGTCA 1081 CTGTGTGCCT GACCCTGACA GCCAAGCGCA TGGCACGGAA GAACTGCCTG GTGAAGAACC 1141 TGGAGGCGGT GGAGACGCTG GGCTCCACGT CCACCATCTG CTCGGACAAG ACGGGCACCC 1201 TCACCAAGAA CCGCATGACC GTCGCCCACA TGTGGTTCGA CAACCAAATC CATGAGGCTG 1261 ACACCACCGA AGATCAGTCT GGGGCCACTT TTGACAAACG ATCCCCTACG TGGACGGCCC 1321 TGTCTCGAAT TGCTGGTCTC TGCAACCGCG CCGTCTTCAA GGCAGGACAG GAGAACATCT 1381 CCGTGTCTAA GCGGGACACA GCTGGTGATG CCTCTGAGTC AGCTCTGCTC AAGTGCATTG 1441 AGCTCTCCTG TGGCTCAGTG AGGAAAATGA GAGACAGAAA CCCCAAGGTG GCAGAGATTC 1501 CTTTCAACTC TACCAACAAG TACCAGCTGT CTATCCACGA GCGAGAAGAC AGCCCCCAGA 1561 GCCACGTGCT GGTGATGAAG GGGGCCCCAG AGCGCATTCT GGACCGGTGC TCCACCATCC 1621 TGGTGCAGGG CAAGGAGATC CCGCTCGACA AGGAGATGCA AGATGCCTTT CAAAATGCCT 1681 ACATGGAGCT GGGGGGACTT GGGGAGCGTG TGCTGGGATT CTGTCAACTG AATCTGCCAT 1741 CTGGAAAGTT TCCTCGGGGC TTCAAATTCG ACACGGATGA GCTGAACTTT CCCACGGAGA 1801 AGCTTTGCTT TGTGGGGCTC ATGTCTATGA TTGACCCTCC CCGGGCTGCT GTGCCAGATG 1861 CTGTGGGCAA GTGCCGAAGC GCAGGCATCA AGGTGATCAT GGTAACCGGG GATCACCCTA 1921 TCACAGCCAA GGCCATTGCC AAAGGCGTGG GCATCATATC AGAGGGTAAC GAGACTGTGG 1981 AGGACATTGC AGCCCGGCTC AACATTCCCA TGAGTCAAGT CAACCCCAGA GAAGCCAAGG 2041 CATGCGTGGT GCACGGCTCT GACCTGAAGG ACATGACATC GGAGCAGCTC GATGAGATCC 2101 TCAAGAACCA CACAGAGATC GTCTTTGCTC GAACGTCTCC CCAGCAGAAG CTCATCATTG 2161 TGGAGGGATG TCAGAGGCAG GGAGCCATTG TGGCCGTGAC GGGTGACGGG GTGAACGACT 2221 CCCCTGCATT GAAGAAGGCT GACATTGGCA TTGCCATGGG CATCTCTGGC TCTGACGTCT 2281 CTAAGCAGGC AGCCGACATG ATCCTGCTGG ATGACAACTT TGCCTCCATC GTCACGGGGG 2341 TGGAGGAGGG CCGCCTGATC TTTGACAACT TGAAGAAATC CATCGCCTAC ACCCTGACCA 2401 GCAACATCCC CGAGATCACC CCCTTCCTGC TGTTCATCAT TGCCAACATC CCCCTACCTC 2461 TGGGCACTGT GACCATCCTT TGCATTGACC TGGGCACAGA TATGGTCCCT GCCATCTCCT 2521 TGGCCTATGA GGCAGCTGAG AGTGATATCA TGAAGCGGCA GCCACGAAAC TCCCAGACGG 2581 ACAAGCTGGT GAATGAGAGG CTCATCAGCA TGGCCTACGG ACAGATCGGG ATGATCCAGG 2641 CACTGGGTGG CTTCTTCACC TACTTTGTGA TCCTGGCAGA GAACGGTTTC CTGCCATCAC 2701 GGCTACTGGG AATCCGCCTC GACTGGGATG ACCGGACCAT GAATGATCTG GAGGACAGCT 2761 ATGGACAGGA GTGGACCTAT GAGCAGCGGA AGGTGGTGGA GTTCACGTGC CACACGGCAT 2821 TCTTTGCCAG CATCGTGGTG GTGCAGTGGG CTGACCTCAT CATCTGCAAG ACCCGCCGCA 2881 ACTCAGTCTT CCAGCAGGGC ATGAAGAACA AGATCCTGAT TTTTGGGCTC CTGGAGGAGA 2941 CGGCGTTGGC TGCCTTTCTC TCTTACTGCC CAGGCATGGG TGTAGCCCTC CGCATGTACC 3001 CGCTCAAAGT CACCTGGTGG TTCTGCGCCT TCCCCTACAG CCTCCTCATC TTCATCTATG 3061 ATGAGGTCCG AAAGCTCATC CTGCGGCGGT ATCCTGGTGG CTGGGTGGAG AAGGAGACAT 3121 ACTACTGCCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 3181 gttgcaacga ac