Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_05974
- Subject:
- XR_001751811.2
- Aligned Length:
- 4663
- Identities:
- 2396
- Gaps:
- 2266
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATCACTTCACAGTTACATTTGGCAGGCAGGCGGGCTCGCACGCCGGAGCGCTCAGCCCAGAATTAGTGGATTTA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTTGGAATCTCCCTGCCTCCTCCAAGCTCCGCCGCCGCCGCCGGCTTGTGCATAGACGGTAGCGTCAAGACACC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGCTGCACTTTGGGTTGCGGACACCCAGAGCCCAGCGCGCCCGCCCTGCGTCTCCGCACCAAGCCCTGTAGCTC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGAGAGGCATGAACGGAATCCGGAGGCGCCTGCCTAGCGAGCGAGGACCGGTCGGCGCTTGCCGCCCTCGGGAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTAACCCCGAGCACCTCCAGCCATTTGTGAACCTGGAGGCTTGACATTCGCCAGCGCAGGGCCCCACAAGAGAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATTTCAATGAAAAGAAAAGCCAATGGATTGTGGTCTTAGAAAAGCTGCTTAGATGATGTCTGTTTCCCGTGCTA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TAGACACGTGGCAGAGCTGTAAGTAAATGCTCGGCACTGCATGATGAATTGGATGGCTGCAGACCGGAGACAAA 518
Query 1 ------------------------------------------------ATGCCAGAACGGCTAGCGGAAATGCT 26
||||||||||||||||||||||||||
Sbjct 519 AAAAATAATTGTCTCATTTTCGTGGTGATTTGCTTAACTGGTGGGACCATGCCAGAACGGCTAGCGGAAATGCT 592
Query 27 CTTGGATCTCTGGACTCCATTAATAATATTATGGATTACTCTTCCCCCTTGCATTTACATGGCTCCGATGAATC 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CTTGGATCTCTGGACTCCATTAATAATATTATGGATTACTCTTCCCCCTTGCATTTACATGGCTCCGATGAATC 666
Query 101 AGTCTCAAGTTTTAATGAGTGGATCCCCTTTGGAACTAAACAGTCTGGGTGAAGAACAGCGAATTTTGAACCGC 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AGTCTCAAGTTTTAATGAGTGGATCCCCTTTGGAACTAAACAGTCTGGGTGAAGAACAGCGAATTTTGAACCGC 740
Query 175 TCCAAAAGAGGCTGGGTTTGGAATCAAATGTTTGTCCTGGAAGAGTTTTCTGGACCTGAACCGATTCTTGTTGG 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TCCAAAAGAGGCTGGGTTTGGAATCAAATGTTTGTCCTGGAAGAGTTTTCTGGACCTGAACCGATTCTTGTTGG 814
Query 249 CCGGCTACACACAGACCTGGATCCTGGGAGCAAAAAAATCAAGTATATCCTATCAGGTGATGGAGCTGGGACCA 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CCGGCTACACACAGACCTGGATCCTGGGAGCAAAAAAATCAAGTATATCCTATCAGGTGATGGAGCTGGGACCA 888
Query 323 TATTTCAAATAAATGATGTAACTGGAGATATCCATGCTATAAAAAGACTTGACCGGGAGGAAAAGGCTGAGTAT 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TATTTCAAATAAATGATGTAACTGGAGATATCCATGCTATAAAAAGACTTGACCGGGAGGAAAAGGCTGAGTAT 962
Query 397 ACCCTAACAGCTCAAGCAGTGGACTGGGAGACAAGCAAACCTCTGGAGCCTCCTTCTGAATTTATTATTAAAGT 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 ACCCTAACAGCTCAAGCAGTGGACTGGGAGACAAGCAAACCTCTGGAGCCTCCTTCTGAATTTATTATTAAAGT 1036
Query 471 TCAAGACATCAATGACAATGCACCAGAGTTTCTTAATGGACCCTATCATGCTACTGTGCCAGAAATGTCCATTT 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TCAAGACATCAATGACAATGCACCAGAGTTTCTTAATGGACCCTATCATGCTACTGTGCCAGAAATGTCCATTT 1110
Query 545 TGGGTACATCTGTCACTAACGTCACTGCGACCGACGCTGATGACCCAGTTTATGGAAACAGTGCAAAGTTGGTT 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TGGGTACATCTGTCACTAACGTCACTGCGACCGACGCTGATGACCCAGTTTATGGAAACAGTGCAAAGTTGGTT 1184
Query 619 TATAGTATATTGGAAGGGCAGCCTTATTTTTCCATTGAGCCTGAAACAGCTATTATAAAAACTGCCCTTCCCAA 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TATAGTATATTGGAAGGGCAGCCTTATTTTTCCATTGAGCCTGAAACAGCTATTATAAAAACTGCCCTTCCCAA 1258
Query 693 CATGGACAGAGAAGCCAAGGAGGAGTACCTGGTTGTTATCCAAGCCAAAGATATGGGTGGACACTCTGGTGGCC 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CATGGACAGAGAAGCCAAGGAGGAGTACCTGGTTGTTATCCAAGCCAAAGATATGGGTGGACACTCTGGTGGCC 1332
Query 767 TGTCTGGGACCACGACACTTACAGTGACTCTTACTGATGTTAATGACAATCCTCCAAAATTTGCACAGAGCCTG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TGTCTGGGACCACGACACTTACAGTGACTCTTACTGATGTTAATGACAATCCTCCAAAATTTGCACAGAGCCTG 1406
Query 841 TATCACTTCTCAGTACCGGAAGATGTGGTTCTTGGCACTGCAATAGGAAGGGTGAAGGCCAATGATCAGGATAT 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 TATCACTTCTCAGTACCGGAAGATGTGGTTCTTGGCACTGCAATAGGAAGGGTGAAGGCCAATGATCAGGATAT 1480
Query 915 TGGTGAAAATGCACAGTCATCATATGATATCATCGATGGAGATGGAACAGCACTTTTTGAAATCACTTCTGATG 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TGGTGAAAATGCACAGTCATCATATGATATCATCGATGGAGATGGAACAGCACTTTTTGAAATCACTTCTGATG 1554
Query 989 CCCAGGCCCAGGATGGCATTATAAGGCTAAGAAAACCTCTGGACTTTGAGACCAAAAAATCCTATACGCTAAAG 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CCCAGGCCCAGGATGGCATTATAAGGCTAAGAAAACCTCTGGACTTTGAGACCAAAAAATCCTATACGCTAAAG 1628
Query 1063 GTAGAGGCAGCCAATGTCCATATTGACCCACGCTTCAGTGGCAGGGGGCCCTTTAAAGACACGGCGACAGTCAA 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 GTAGAGGCAGCCAATGTCCATATTGACCCACGCTTCAGTGGCAGGGGGCCCTTTAAAGACACGGCGACAGTCAA 1702
Query 1137 AATCGTGGTTGAAGATGCTGATGAGCCTCCGGTCTTCTCTTCACCGACTTACCTACTTGAAGTTCATGAAAATG 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 AATCGTGGTTGAAGATGCTGATGAGCCTCCGGTCTTCTCTTCACCGACTTACCTACTTGAAGTTCATGAAAATG 1776
Query 1211 CTGCTCTAAACTCCGTGATTGGGCAAGTGACTGCTCGTGACCCTGATATCACTTCCAGTCCTATAAGGTTTTCC 1284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 CTGCTCTAAACTCCGTGATTGGGCAAGTGACTGCTCGTGACCCTGATATCACTTCCAGTCCTATAAGGTTTTCC 1850
Query 1285 ATCGACCGGCACACTGACCTGGAGAGGCAGTTCAACATTAATGCAGACGATGGGAAGATAACGCTGGCAACACC 1358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 ATCGACCGGCACACTGACCTGGAGAGGCAGTTCAACATTAATGCAGACGATGGGAAGATAACGCTGGCAACACC 1924
Query 1359 ACTTGACAGAGAATTAAGTGTATGGCACAACATAACAATCATTGCTACTGAAATTAGGAACCACAGTCAGATAT 1432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 ACTTGACAGAGAATTAAGTGTATGGCACAACATAACAATCATTGCTACTGAAATTAGGAACCACAGTCAGATAT 1998
Query 1433 CACGAGTACCTGTTGCTATTAAAGTGCTGGATGTCAATGACAACGCCCCTGAATTCGCATCCGAATATGAGGCA 1506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 CACGAGTACCTGTTGCTATTAAAGTGCTGGATGTCAATGACAACGCCCCTGAATTCGCATCCGAATATGAGGCA 2072
Query 1507 TTTTTATGTGAAAATGGAAAACCCGGCCAA-------------------------------------------- 1536
||||||||||||||||||||||||||||||
Sbjct 2073 TTTTTATGTGAAAATGGAAAACCCGGCCAAATGCCCGTAAATACTCAAATTGGAAAGAAACCTGTAATTGCCCA 2146
Query 1537 ---------------------------------------------------------------GTCATTCAAAC 1547
|||||||||||
Sbjct 2147 GTGGATATTTCAAATACACTTAACTTTGCTATTTCAAGCCACAGACACCAAATGGACACAAAGGTCATTCAAAC 2220
Query 1548 TGTTAGCGCCATGGACAAAGATGATCCCAAAAACGGACATTATTTCTTATACAGTCTCCTTCCAGAAATGGTCA 1621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 TGTTAGCGCCATGGACAAAGATGATCCCAAAAACGGACATTATTTCTTATACAGTCTCCTTCCAGAAATGGTCA 2294
Query 1622 ACAATCCGAATTTCACCATCAAGAAAAATGAAGATAATTCCCTCAGTATTTTGGCAAAGCATAATGGATTCAAC 1695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 ACAATCCGAATTTCACCATCAAGAAAAATGAAGATAATTCCCTCAGTATTTTGGCAAAGCATAATGGATTCAAC 2368
Query 1696 CGCCAGAAGCAAGAAGTCTATCTTTTACCAATCATAATCAGTGATAGTGGAAATCCTCCACTGAGCAGCACTAG 1769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 CGCCAGAAGCAAGAAGTCTATCTTTTACCAATCATAATCAGTGATAGTGGAAATCCTCCACTGAGCAGCACTAG 2442
Query 1770 CACCTTGACAATCAGGGTCTGTGGCTGCAGCAATGACGGTGTCGTCCAGTCTTGCAATGTCGAAGCTTATGTCC 1843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 CACCTTGACAATCAGGGTCTGTGGCTGCAGCAATGACGGTGTCGTCCAGTCTTGCAATGTCGAAGCTTATGTCC 2516
Query 1844 TTCCAATTGGACTCAGTATGGGCGCCTTAATTGCCATATTAGCATGCATCATTTTGCTGTTAGTCATCGTGGTG 1917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 TTCCAATTGGACTCAGTATGGGCGCCTTAATTGCCATATTAGCATGCATCATTTTGCTGTTAGTCATCGTGGTG 2590
Query 1918 CTGTTTGTAACTCTACGGCGGCATAAAAATGAACCATTAATTATCAAAGATGATGAAGACGTTCGAGAAAACAT 1991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 CTGTTTGTAACTCTACGGCGGCATAAAAATGAACCATTAATTATCAAAGATGATGAAGACGTTCGAGAAAACAT 2664
Query 1992 CATTCGCTACGATGATGAAGGAGGAGGGGAGGAGGACACAGAGGCTTTTGACATTGCAACTTTACAAAATCCAG 2065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665 CATTCGCTACGATGATGAAGGAGGAGGGGAGGAGGACACAGAGGCTTTTGACATTGCAACTTTACAAAATCCAG 2738
Query 2066 ATGGAATTAATGGATTTTTACCCCGTAAGGATATTAAACCAGATTTGCAGTTTATGCCAAGGCAAGGGCTTGCT 2139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739 ATGGAATTAATGGATTTTTACCCCGTAAGGATATTAAACCAGATTTGCAGTTTATGCCAAGGCAAGGGCTTGCT 2812
Query 2140 CCAGTTCCAAATGGTGTTGATGTCGATGAATTTATAAATGTAAGGCTGCATGAGGCAGATAATGATCCCACAGC 2213
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct 2813 CCAGTTCCAAATGGTGTTGATGTCGATGAATTTATAAATGTAAGGCTGCATGAGGCAGATAATGATCCCACGGC 2886
Query 2214 CCCGCCATATGACTCCATTCAGATATATGGCTATGAAGGCCGAGGGTCAGTGGCTGGCTCCCTCAGCTCCTTGG 2287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887 CCCGCCATATGACTCCATTCAGATATATGGCTATGAAGGCCGAGGGTCAGTGGCTGGCTCCCTCAGCTCCTTGG 2960
Query 2288 AGTCCACCACATCAGACTCAGACCAGAATTTTGACTACCTCAGTGACTGGGGTCCCCGCTTTAAGAGACTGGGC 2361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961 AGTCCACCACATCAGACTCAGACCAGAATTTTGACTACCTCAGTGACTGGGGTCCCCGCTTTAAGAGACTGGGC 3034
Query 2362 GAACTCTACTCTGTTGGTGAAAGTGACAAAGAAACT-------------------------------------- 2397
||||||||||||||||||||||||||||||||||||
Sbjct 3035 GAACTCTACTCTGTTGGTGAAAGTGACAAAGAAACTTGACAGTGGATTATAAATAAATCACTGGAACTGAGCAT 3108
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 3109 TCTGTAATATTCTAGGGTCACTCCCCTTAGATACAACCAATGTGGCTATTTGTTTTAGAGGCAAGTTTAGCACC 3182
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 3183 AGTCATCTATAAACTCAACCACATTTTAATGTTGAACCAAAAAAAGATAATAAAATAAAAAAGTATATGTTAGG 3256
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 3257 AGGTTATAAATCTTGTGGAGTGTGAATTAAGTATGTGGAGTGTCTAGAAGTCCTTGGATATTTGATATTTACCT 3330
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 3331 GACCACCACAGACAAAGATTGGGATCCTGGCTAATCCTTAGATAAATGGTTTAAATAGAGGAAAAAATCATAAT 3404
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 3405 TAAAAGGTGCTTTCTTAGAAAAAAAAATACGGACCTGCAAGGAATCTGCTGCTGATATGTGTCTTCTGCAAGGA 3478
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 3479 TTTTTATGAATGCAAATGGTTTTTTCCCCTTCACCAATAAGGATCCCGCCACAAATGATAAAGCAATACTTGGT 3552
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 3553 CTGCTGTACATTATAACTTTTTGGAGTTTTGAGAGGCCTCCTAGATTATACAGTACGGTGACCACACATTGTAC 3626
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 3627 ATAATTGTTGGCCCCACTCACTAGAGACTGAATAGCATCTTTAAATATTGTGTCGAGCCTTAAAATATTCACAT 3700
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 3701 GTTCGTAATCCATTCCAGGGTGGGGCTTGCCAATTCAGTGGTGGGAGGAGAGAAATCCCATTCAAACATGCTTG 3774
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 3775 TTTTCTAGAAGCAGGATTCCTCGTTCCCTCCTCTTCATCTTCTTCCACAAGGACACAAAGATAAACTGTATCAC 3848
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 3849 ACAGTGGACTACATAAGAGACAGATGGTTTTATTGCTAGCGCGTGAATTTATTTGTTTAATCCTCGAAATAAAT 3922
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 3923 ATTTTATTGATGTCCATTAATGCTTTTATTTATTAAGGTCGGTAATCTATAGATTAAGGGGATATATGGGAAAA 3996
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 3997 AACTAAATTATATCCATTAATAATCCTTTAGATTGTTTTATATAAATATATATACAATGAATGTTTAATACATG 4070
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 4071 TACATTTTGATGAGATGAGTATGGCAGGCAATATTATCGAAAGGAGAGCTAATAGTCTCTTTAGAGTAGAAAGT 4144
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 4145 GTTATTGTAACTGGAGATGGCAGGAACAGCATCTTCCCAGACAAACTTTTGGACTGTTTTCTATTTTGTTCATA 4218
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 4219 ATCCTAGTATTTGGTGTTTTTACTACAAGCACAAACATCCTAAAGTATATTGATTCCTGTGAATATTTAAACTC 4292
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 4293 TAGACTTTTAGATACCTACATCATGCCCTGCCCAATAAACATGCTTCAATTTACCCCCACAGTTTTAGAGCAGG 4366
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 4367 AACTGATTTGTACATAATTTCACTGTTTACGTTTTTAGCACTCCTATCCCTGATCTTCATGGTGATGCACAGAA 4440
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 4441 TGTCTTAGACTCCAAAAAGGAACAGCACTAGAAGATGTGAGCATATTTAATTTGTAATGCAAACCTGCCATTTA 4514
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 4515 GGAGTAGAAAATGTATGATAAAACTCAAGTATTACATGCAGATCATTTTAATTTTCTACTTTGCTTTAATGCAA 4588
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 4589 TATTGTTTATTCACTCCATGTATTGTATTCAGAGAAACTCCTGTATTGTTTCCTACTTTGTGAAATATATTTTT 4662
Query 2398 - 2397
Sbjct 4663 A 4663