Construct: ORF ccsbBroadEn_05974

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000090.1_s300c1, BRDN0000387813
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CDH8 (1006)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1006 CDH8 cadherin 8 NM_001796.5 99.9% 100% 2211G>A
2 human 1006 CDH8 cadherin 8 XM_005255760.4 88.1% 87.7% (many diffs)
3 human 1006 CDH8 cadherin 8 XR_001751811.2 51.3% (many diffs)
4 human 1006 CDH8 cadherin 8 XR_001751813.2 49.9% (many diffs)
5 human 1006 CDH8 cadherin 8 XR_001751812.2 22.1% (many diffs)
6 human 1006 CDH8 cadherin 8 XR_001751814.2 21.2% (many diffs)
7 mouse 12564 Cdh8 cadherin 8 NM_007667.3 91.3% 96.9% (many diffs)
8 mouse 12564 Cdh8 cadherin 8 XM_006530631.2 91.3% 96.9% (many diffs)
9 mouse 12564 Cdh8 cadherin 8 XM_006530634.3 83.5% 84.6% (many diffs)
10 mouse 12564 Cdh8 cadherin 8 NM_001285913.1 81.9% 87.5% (many diffs)
11 mouse 12564 Cdh8 cadherin 8 NM_001039154.2 80.7% 84.1% (many diffs)
12 mouse 12564 Cdh8 cadherin 8 NM_001285914.1 80.2% 84.3% (many diffs)
13 mouse 12564 Cdh8 cadherin 8 NR_133570.1 43.2% (many diffs)
14 mouse 12564 Cdh8 cadherin 8 XM_017312551.1 28.9% 30.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2466
ORF length:
2397
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GCCAGAACGG CTAGCGGAAA TGCTCTTGGA TCTCTGGACT CCATTAATAA
121TATTATGGAT TACTCTTCCC CCTTGCATTT ACATGGCTCC GATGAATCAG TCTCAAGTTT
181TAATGAGTGG ATCCCCTTTG GAACTAAACA GTCTGGGTGA AGAACAGCGA ATTTTGAACC
241GCTCCAAAAG AGGCTGGGTT TGGAATCAAA TGTTTGTCCT GGAAGAGTTT TCTGGACCTG
301AACCGATTCT TGTTGGCCGG CTACACACAG ACCTGGATCC TGGGAGCAAA AAAATCAAGT
361ATATCCTATC AGGTGATGGA GCTGGGACCA TATTTCAAAT AAATGATGTA ACTGGAGATA
421TCCATGCTAT AAAAAGACTT GACCGGGAGG AAAAGGCTGA GTATACCCTA ACAGCTCAAG
481CAGTGGACTG GGAGACAAGC AAACCTCTGG AGCCTCCTTC TGAATTTATT ATTAAAGTTC
541AAGACATCAA TGACAATGCA CCAGAGTTTC TTAATGGACC CTATCATGCT ACTGTGCCAG
601AAATGTCCAT TTTGGGTACA TCTGTCACTA ACGTCACTGC GACCGACGCT GATGACCCAG
661TTTATGGAAA CAGTGCAAAG TTGGTTTATA GTATATTGGA AGGGCAGCCT TATTTTTCCA
721TTGAGCCTGA AACAGCTATT ATAAAAACTG CCCTTCCCAA CATGGACAGA GAAGCCAAGG
781AGGAGTACCT GGTTGTTATC CAAGCCAAAG ATATGGGTGG ACACTCTGGT GGCCTGTCTG
841GGACCACGAC ACTTACAGTG ACTCTTACTG ATGTTAATGA CAATCCTCCA AAATTTGCAC
901AGAGCCTGTA TCACTTCTCA GTACCGGAAG ATGTGGTTCT TGGCACTGCA ATAGGAAGGG
961TGAAGGCCAA TGATCAGGAT ATTGGTGAAA ATGCACAGTC ATCATATGAT ATCATCGATG
1021GAGATGGAAC AGCACTTTTT GAAATCACTT CTGATGCCCA GGCCCAGGAT GGCATTATAA
1081GGCTAAGAAA ACCTCTGGAC TTTGAGACCA AAAAATCCTA TACGCTAAAG GTAGAGGCAG
1141CCAATGTCCA TATTGACCCA CGCTTCAGTG GCAGGGGGCC CTTTAAAGAC ACGGCGACAG
1201TCAAAATCGT GGTTGAAGAT GCTGATGAGC CTCCGGTCTT CTCTTCACCG ACTTACCTAC
1261TTGAAGTTCA TGAAAATGCT GCTCTAAACT CCGTGATTGG GCAAGTGACT GCTCGTGACC
1321CTGATATCAC TTCCAGTCCT ATAAGGTTTT CCATCGACCG GCACACTGAC CTGGAGAGGC
1381AGTTCAACAT TAATGCAGAC GATGGGAAGA TAACGCTGGC AACACCACTT GACAGAGAAT
1441TAAGTGTATG GCACAACATA ACAATCATTG CTACTGAAAT TAGGAACCAC AGTCAGATAT
1501CACGAGTACC TGTTGCTATT AAAGTGCTGG ATGTCAATGA CAACGCCCCT GAATTCGCAT
1561CCGAATATGA GGCATTTTTA TGTGAAAATG GAAAACCCGG CCAAGTCATT CAAACTGTTA
1621GCGCCATGGA CAAAGATGAT CCCAAAAACG GACATTATTT CTTATACAGT CTCCTTCCAG
1681AAATGGTCAA CAATCCGAAT TTCACCATCA AGAAAAATGA AGATAATTCC CTCAGTATTT
1741TGGCAAAGCA TAATGGATTC AACCGCCAGA AGCAAGAAGT CTATCTTTTA CCAATCATAA
1801TCAGTGATAG TGGAAATCCT CCACTGAGCA GCACTAGCAC CTTGACAATC AGGGTCTGTG
1861GCTGCAGCAA TGACGGTGTC GTCCAGTCTT GCAATGTCGA AGCTTATGTC CTTCCAATTG
1921GACTCAGTAT GGGCGCCTTA ATTGCCATAT TAGCATGCAT CATTTTGCTG TTAGTCATCG
1981TGGTGCTGTT TGTAACTCTA CGGCGGCATA AAAATGAACC ATTAATTATC AAAGATGATG
2041AAGACGTTCG AGAAAACATC ATTCGCTACG ATGATGAAGG AGGAGGGGAG GAGGACACAG
2101AGGCTTTTGA CATTGCAACT TTACAAAATC CAGATGGAAT TAATGGATTT TTACCCCGTA
2161AGGATATTAA ACCAGATTTG CAGTTTATGC CAAGGCAAGG GCTTGCTCCA GTTCCAAATG
2221GTGTTGATGT CGATGAATTT ATAAATGTAA GGCTGCATGA GGCAGATAAT GATCCCACAG
2281CCCCGCCATA TGACTCCATT CAGATATATG GCTATGAAGG CCGAGGGTCA GTGGCTGGCT
2341CCCTCAGCTC CTTGGAGTCC ACCACATCAG ACTCAGACCA GAATTTTGAC TACCTCAGTG
2401ACTGGGGTCC CCGCTTTAAG AGACTGGGCG AACTCTACTC TGTTGGTGAA AGTGACAAAG
2461AAACTTTGCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt
2521gttgcaacga ac

Download FASTA (ORF) (Full)

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.