Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_05974
- Subject:
- XR_001751813.2
- Aligned Length:
- 4556
- Identities:
- 2274
- Gaps:
- 2281
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATCACTTCACAGTTACATTTGGCAGGCAGGCGGGCTCGCACGCCGGAGCGCTCAGCCCAGAATTAGTGGATTTA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTTGGAATCTCCCTGCCTCCTCCAAGCTCCGCCGCCGCCGCCGGCTTGTGCATAGACGGTAGCGTCAAGACACC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGCTGCACTTTGGGTTGCGGACACCCAGAGCCCAGCGCGCCCGCCCTGCGTCTCCGCACCAAGCCCTGTAGCTC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGAGAGGCATGAACGGAATCCGGAGGCGCCTGCCTAGCGAGCGAGGACCGGTCGGCGCTTGCCGCCCTCGGGAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTAACCCCGAGCACCTCCAGCCATTTGTGAACCTGGAGGCTTGACATTCGCCAGCGCAGGGCCCCACAAGAGAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATTTCAATGAAAAGAAAAGCCAATGGATTGTGGTCTTAGAAAAGCTGCTTAGATGATGTCTGTTTCCCGTGCTA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TAGACACGTGGCAGAGCTGTAAGTAAATGCTCGGCACTGCATGATGAATTGGATGGCTGCAGACCGGAGACAAA 518
Query 1 ------------------------------------------------ATGCCAGAACGGCTAGCGGAAATGCT 26
||||||||||||||||||||||||||
Sbjct 519 AAAAATAATTGTCTCATTTTCGTGGTGATTTGCTTAACTGGTGGGACCATGCCAGAACGGCTAGCGGAAATGCT 592
Query 27 CTTGGATCTCTGGACTCCATTAATAATATTATGGATTACTCTTCCCCCTTGCATTTACATGGCTCCGATGAATC 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CTTGGATCTCTGGACTCCATTAATAATATTATGGATTACTCTTCCCCCTTGCATTTACATGGCTCCGATGAATC 666
Query 101 AGTCTCAAGTTTTAATGAGTGGATCCCCTTTGGAACTAAACAGTCTGGGTGAAGAACAGCGAATTTTGAACCGC 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AGTCTCAAGTTTTAATGAGTGGATCCCCTTTGGAACTAAACAGTCTGGGTGAAGAACAGCGAATTTTGAACCGC 740
Query 175 TCCAAAAGAGGCTGGGTTTGGAATCAAATGTTTGTCCTGGAAGAGTTTTCTGGACCTGAACCGATTCTTGTTGG 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TCCAAAAGAGGCTGGGTTTGGAATCAAATGTTTGTCCTGGAAGAGTTTTCTGGACCTGAACCGATTCTTGTTGG 814
Query 249 CCGGCTACACACAGACCTGGATCCTGGGAGCAAAAAAATCAAGTATATCCTATCAGGTGATGGAGCTGGGACCA 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CCGGCTACACACAGACCTGGATCCTGGGAGCAAAAAAATCAAGTATATCCTATCAGGTGATGGAGCTGGGACCA 888
Query 323 TATTTCAAATAAATGATGTAACTGGAGATATCCATGCTATAAAAAGACTTGACCGGGAGGAAAAGGCTGAGTAT 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TATTTCAAATAAATGATGTAACTGGAGATATCCATGCTATAAAAAGACTTGACCGGGAGGAAAAGGCTGAGTAT 962
Query 397 ACCCTAACAGCTCAAGCAGTGGACTGGGAGACAAGCAAACCTCTGGAGCCTCCTTCTGAATTTATTATTAAAGT 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 ACCCTAACAGCTCAAGCAGTGGACTGGGAGACAAGCAAACCTCTGGAGCCTCCTTCTGAATTTATTATTAAAGT 1036
Query 471 TCAAGACATCAATGACAATGCACCAGAGTTTCTTAATGGACCCTATCATGCTACTGTGCCAGAAATGTCCATTT 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TCAAGACATCAATGACAATGCACCAGAGTTTCTTAATGGACCCTATCATGCTACTGTGCCAGAAATGTCCATTT 1110
Query 545 TGGGTACATCTGTCACTAACGTCACTGCGACCGACGCTGATGACCCAGTTTATGGAAACAGTGCAAAGTTGGTT 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TGGGTACATCTGTCACTAACGTCACTGCGACCGACGCTGATGACCCAGTTTATGGAAACAGTGCAAAGTTGGTT 1184
Query 619 TATAGTATATTGGAAGGGCAGCCTTATTTTTCCATTGAGCCTGAAACAGCTATTATAAAAACTGCCCTTCCCAA 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TATAGTATATTGGAAGGGCAGCCTTATTTTTCCATTGAGCCTGAAACAGCTATTATAAAAACTGCCCTTCCCAA 1258
Query 693 CATGGACAGAGAAGCCAAGGAGGAGTACCTGGTTGTTATCCAAGCCAAAGATATGGGTGGACACTCTGGTGGCC 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CATGGACAGAGAAGCCAAGGAGGAGTACCTGGTTGTTATCCAAGCCAAAGATATGGGTGGACACTCTGGTGGCC 1332
Query 767 TGTCTGGGACCACGACACTTACAGTGACTCTTACTGATGTTAATGACAATCCTCCAAAATTTGCACAGAGCCTG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TGTCTGGGACCACGACACTTACAGTGACTCTTACTGATGTTAATGACAATCCTCCAAAATTTGCACAGAGCCTG 1406
Query 841 TATCACTTCTCAGTACCGGAAGATGTGGTTCTTGGCACTGCAATAGGAAGGGTGAAGGCCAATGATCAGGATAT 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 TATCACTTCTCAGTACCGGAAGATGTGGTTCTTGGCACTGCAATAGGAAGGGTGAAGGCCAATGATCAGGATAT 1480
Query 915 TGGTGAAAATGCACAGTCATCATATGATATCATCGATGGAGATGGAACAGCACTTTTTGAAATCACTTCTGATG 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TGGTGAAAATGCACAGTCATCATATGATATCATCGATGGAGATGGAACAGCACTTTTTGAAATCACTTCTGATG 1554
Query 989 CCCAGGCCCAGGATGGCATTATAAGGCTAAGAAAACCTCTGGACTTTGAGACCAAAAAATCCTATACGCTAAAG 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CCCAGGCCCAGGATGGCATTATAAGGCTAAGAAAACCTCTGGACTTTGAGACCAAAAAATCCTATACGCTAAAG 1628
Query 1063 GTAGAGGCAGCCAATGTCCATATTGACCCACGCTTCAGTGGCAGGGGGCCCTTTAAAGACACGGCGACAGTCAA 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 GTAGAGGCAGCCAATGTCCATATTGACCCACGCTTCAGTGGCAGGGGGCCCTTTAAAGACACGGCGACAGTCAA 1702
Query 1137 AATCGTGGTTGAAGATGCTGATGAGCCTCCGGTCTTCTCTTCACCGACTTACCTACTTGAAGTTCATGAAAATG 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 AATCGTGGTTGAAGATGCTGATGAGCCTCCGGTCTTCTCTTCACCGACTTACCTACTTGAAGTTCATGAAAATG 1776
Query 1211 CTGCTCTAAACTCCGTGATTGGGCAAGTGACTGCTCGTGACCCTGATATCACTTCCAGTCCTATAAGGTTTTCC 1284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 CTGCTCTAAACTCCGTGATTGGGCAAGTGACTGCTCGTGACCCTGATATCACTTCCAGTCCTATAAGGTTTTCC 1850
Query 1285 ATCGACCGGCACACTGACCTGGAGAGGCAGTTCAACATTAATGCAGACGATGGGAAGATAACGCTGGCAACACC 1358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 ATCGACCGGCACACTGACCTGGAGAGGCAGTTCAACATTAATGCAGACGATGGGAAGATAACGCTGGCAACACC 1924
Query 1359 ACTTGACAGAGAATTAAGTGTATGGCACAACATAACAATCATTGCTACTGAAATTAGGAACCACAGTCAGATAT 1432
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 ACTTGACAGAGAATTAAGTGTATGGCACAACATAACAATCATTGCTACTGAAATT------------------- 1979
Query 1433 CACGAGTACCTGTTGCTATTAAAGTGCTGGATGTCAATGACAACGCCCCTGAATTCGCATCCGAATATGAGGCA 1506
Sbjct 1980 -------------------------------------------------------------------------- 1979
Query 1507 TTTTTATGTGAAAATGGAAAACCCGGCCAAGTCATTCAAACTGTTAGCGCCATGGACAAAGATGATCCCAAAAA 1580
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1980 -----------------------------AGTCATTCAAACTGTTAGCGCCATGGACAAAGATGATCCCAAAAA 2024
Query 1581 CGGACATTATTTCTTATACAGTCTCCTTCCAGAAATGGTCAACAATCCGAATTTCACCATCAAGAAAAATGAAG 1654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2025 CGGACATTATTTCTTATACAGTCTCCTTCCAGAAATGGTCAACAATCCGAATTTCACCATCAAGAAAAATGAAG 2098
Query 1655 ATAATTCCCTCAGTATTTTGGCAAAGCATAATGGATTCAACCGCCAGAAGCAAGAAGTCTATCTTTTACCAATC 1728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2099 ATAATTCCCTCAGTATTTTGGCAAAGCATAATGGATTCAACCGCCAGAAGCAAGAAGTCTATCTTTTACCAATC 2172
Query 1729 ATAATCAGTGATAGTGGAAATCCTCCACTGAGCAGCACTAGCACCTTGACAATCAGGGTCTGTGGCTGCAGCAA 1802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2173 ATAATCAGTGATAGTGGAAATCCTCCACTGAGCAGCACTAGCACCTTGACAATCAGGGTCTGTGGCTGCAGCAA 2246
Query 1803 TGACGGTGTCGTCCAGTCTTGCAATGTCGAAGCTTATGTCCTTCCAATTGGACTCAGTATGGGCGCCTTAATTG 1876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2247 TGACGGTGTCGTCCAGTCTTGCAATGTCGAAGCTTATGTCCTTCCAATTGGACTCAGTATGGGCGCCTTAATTG 2320
Query 1877 CCATATTAGCATGCATCATTTTGCTGTTAGTCATCGTGGTGCTGTTTGTAACTCTACGGCGGCATAAAAATGAA 1950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2321 CCATATTAGCATGCATCATTTTGCTGTTAGTCATCGTGGTGCTGTTTGTAACTCTACGGCGGCATAAAAATGAA 2394
Query 1951 CCATTAATTATCAAAGATGATGAAGACGTTCGAGAAAACATCATTCGCTACGATGATGAAGGAGGAGGGGAGGA 2024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2395 CCATTAATTATCAAAGATGATGAAGACGTTCGAGAAAACATCATTCGCTACGATGATGAAGGAGGAGGGGAGGA 2468
Query 2025 GGACACAGAGGCTTTTGACATTGCAACTTTACAAAATCCAGATGGAATTAATGGATTTTTACCCCGTAAGGATA 2098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2469 GGACACAGAGGCTTTTGACATTGCAACTTTACAAAATCCAGATGGAATTAATGGATTTTTACCCCGTAAGGATA 2542
Query 2099 TTAAACCAGATTTGCAGTTTATGCCAAGGCAAGGGCTTGCTCCAGTTCCAAATGGTGTTGATGTCGATGAATTT 2172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2543 TTAAACCAGATTTGCAGTTTATGCCAAGGCAAGGGCTTGCTCCAGTTCCAAATGGTGTTGATGTCGATGAATTT 2616
Query 2173 ATAAATGTAAGGCTGCATGAGGCAGATAATGATCCCACAGCCCCGCCATATGACTCCATTCAGATATATGGCTA 2246
||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct 2617 ATAAATGTAAGGCTGCATGAGGCAGATAATGATCCCACGGCCCCGCCATATGACTCCATTCAGATATATGGCTA 2690
Query 2247 TGAAGGCCGAGGGTCAGTGGCTGGCTCCCTCAGCTCCTTGGAGTCCACCACATCAGACTCAGACCAGAATTTTG 2320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2691 TGAAGGCCGAGGGTCAGTGGCTGGCTCCCTCAGCTCCTTGGAGTCCACCACATCAGACTCAGACCAGAATTTTG 2764
Query 2321 ACTACCTCAGTGACTGGGGTCCCCGCTTTAAGAGACTGGGCGAACTCTACTCTGTTGGTGAAAGTGACAAAGAA 2394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2765 ACTACCTCAGTGACTGGGGTCCCCGCTTTAAGAGACTGGGCGAACTCTACTCTGTTGGTGAAAGTGACAAAGAA 2838
Query 2395 ACT----------------------------------------------------------------------- 2397
|||
Sbjct 2839 ACTTGACAGTGGATTATAAATAAATCACTGGAACTGAGCATTCTGTAATATTCTAGGGTCACTCCCCTTAGATA 2912
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 2913 CAACCAATGTGGCTATTTGTTTTAGAGGCAAGTTTAGCACCAGTCATCTATAAACTCAACCACATTTTAATGTT 2986
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 2987 GAACCAAAAAAAGATAATAAAATAAAAAAGTATATGTTAGGAGGTTATAAATCTTGTGGAGTGTGAATTAAGTA 3060
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 3061 TGTGGAGTGTCTAGAAGTCCTTGGATATTTGATATTTACCTGACCACCACAGACAAAGATTGGGATCCTGGCTA 3134
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 3135 ATCCTTAGATAAATGGTTTAAATAGAGGAAAAAATCATAATTAAAAGGTGCTTTCTTAGAAAAAAAAATACGGA 3208
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 3209 CCTGCAAGGAATCTGCTGCTGATATGTGTCTTCTGCAAGGATTTTTATGAATGCAAATGGTTTTTTCCCCTTCA 3282
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 3283 CCAATAAGGATCCCGCCACAAATGATAAAGCAATACTTGGTCTGCTGTACATTATAACTTTTTGGAGTTTTGAG 3356
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 3357 AGGCCTCCTAGATTATACAGTACGGTGACCACACATTGTACATAATTGTTGGCCCCACTCACTAGAGACTGAAT 3430
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 3431 AGCATCTTTAAATATTGTGTCGAGCCTTAAAATATTCACATGTTCGTAATCCATTCCAGGGTGGGGCTTGCCAA 3504
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 3505 TTCAGTGGTGGGAGGAGAGAAATCCCATTCAAACATGCTTGTTTTCTAGAAGCAGGATTCCTCGTTCCCTCCTC 3578
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 3579 TTCATCTTCTTCCACAAGGACACAAAGATAAACTGTATCACACAGTGGACTACATAAGAGACAGATGGTTTTAT 3652
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 3653 TGCTAGCGCGTGAATTTATTTGTTTAATCCTCGAAATAAATATTTTATTGATGTCCATTAATGCTTTTATTTAT 3726
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 3727 TAAGGTCGGTAATCTATAGATTAAGGGGATATATGGGAAAAAACTAAATTATATCCATTAATAATCCTTTAGAT 3800
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 3801 TGTTTTATATAAATATATATACAATGAATGTTTAATACATGTACATTTTGATGAGATGAGTATGGCAGGCAATA 3874
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 3875 TTATCGAAAGGAGAGCTAATAGTCTCTTTAGAGTAGAAAGTGTTATTGTAACTGGAGATGGCAGGAACAGCATC 3948
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 3949 TTCCCAGACAAACTTTTGGACTGTTTTCTATTTTGTTCATAATCCTAGTATTTGGTGTTTTTACTACAAGCACA 4022
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 4023 AACATCCTAAAGTATATTGATTCCTGTGAATATTTAAACTCTAGACTTTTAGATACCTACATCATGCCCTGCCC 4096
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 4097 AATAAACATGCTTCAATTTACCCCCACAGTTTTAGAGCAGGAACTGATTTGTACATAATTTCACTGTTTACGTT 4170
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 4171 TTTAGCACTCCTATCCCTGATCTTCATGGTGATGCACAGAATGTCTTAGACTCCAAAAAGGAACAGCACTAGAA 4244
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 4245 GATGTGAGCATATTTAATTTGTAATGCAAACCTGCCATTTAGGAGTAGAAAATGTATGATAAAACTCAAGTATT 4318
Query 2398 -------------------------------------------------------------------------- 2397
Sbjct 4319 ACATGCAGATCATTTTAATTTTCTACTTTGCTTTAATGCAATATTGTTTATTCACTCCATGTATTGTATTCAGA 4392
Query 2398 ------------------------------------------ 2397
Sbjct 4393 GAAACTCCTGTATTGTTTCCTACTTTGTGAAATATATTTTTA 4434