Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_05978
Subject:
NM_001349563.2
Aligned Length:
2370
Identities:
1696
Gaps:
669

Alignment

Query    1  ATGAAAATTACTTGCACATCTTGCATCTGTCCAGTCCTAGTGTGTCTCTGTTTTGTGCAGAGGTGTTATGGAAC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  TGCTCACCACAGCTCCATCAAGGTGATGAGAAACCAAACCAAACACATTGAAGGTGAAACCGAAGTCCATCATC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  GTCCCAAAAGGGGATGGGTATGGAATCAGTTCTTTGTTTTAGAAGAACATATGGGACCAGATCCTCAGTATGTT  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  GGAAAGCTGCACTCCAATTCTGACAAAGGTGATGGATCTGTCAAGTACATCCTTACTGGAGAGGGTGCTGGGAC  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  TATATTTATCATTGACGATACCACGGGTGATATCCACTCAACAAAAAGCCTAGACAGAGAGCAGAAGACCCACT  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  ATGTGCTTCATGCTCAAGCTATTGATAGACGTACAAACAAACCTCTTGAGCCTGAATCCGAGTTCATCATCAAA  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  GTGCAAGACATCAATGACAACGCTCCAAAATTCACAGATGGACCATACATTGTTACTGTGCCTGAAATGTCAGA  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  TATGGGTACCTCTGTTCTACAGGTGACAGCTACTGATGCAGATGACCCTACCTATGGAAACAGCGCTCGGGTGG  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  TTTACAGCATTCTCCAGGGACAACCCTACTTCTCCGTCGACCCTAAAACAGGAGTTATTAGAACGGCCTTACAT  666
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  667  AACATGGACGGAGAAGCCAGAGAACATTACTCCGTAGTCATTCAAGCCAAAGACATGGCTGGGCAAGTTGGAGG  740
               ||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ---ATGGACAGAGAAGCCAGAGAACATTACTCCGTAGTCATTCAAGCCAAAGACATGGCTGGGCAAGTTGGAGG  71

Query  741  GCTTTCAGGATCTACAACAGTCAACATCACCTTAACCGATGTCAATGACAACACACCACGCTTTCCTCAAAAAC  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct   72  GCTTTCAGGATCTACAACAGTCAACATCACCTTAACCGATGTCAATGACAACCCACCACGCTTTCCTCAAAAAC  145

Query  815  ACTATCAGCTATATGTTCCTGAGTCAGCTCAAGTTGGTTCAGCTGTTGGGAAAATCAAGGCAAATGATGCTGAC  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  146  ACTATCAGCTATATGTTCCTGAGTCAGCTCAAGTTGGTTCAGCTGTTGGGAAAATCAAGGCAAATGATGCTGAC  219

Query  889  ACTGGCTCAAATGCTGACATGACCTACTCCATCATAAATGGTGATGGCATGGGAATATTCTCAATCTCCACTGA  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  220  ACTGGCTCAAATGCTGACATGACCTACTCCATCATAAATGGTGATGGCATGGGAATATTCTCAATCTCCACTGA  293

Query  963  CAAAGAGACCAGAGAAGGAATCCTTTCTTTAAAGAAGCCACTGAACTATGAGAAAAAGAAGTCATATACCCTCA  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  294  CAAAGAGACCAGAGAAGGAATCCTTTCTTTAAAGAAGCCACTGAACTATGAGAAAAAGAAGTCATATACCCTCA  367

Query 1037  ACATAGAAGGAGCAAATACACATCTTGATTTTCGCTTTTCTCACTTGGGTCCTTTTAAAGATGCTACTATGCTG  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  368  ACATAGAAGGAGCAAATACACATCTTGATTTTCGCTTTTCTCACTTGGGTCCTTTTAAAGATGCTACTATGCTG  441

Query 1111  AAGATCATTGTTGGGGATGTAGATGAACCACCACTATTTTCCATGCCTTCCTACCTCATGGAAGTCTACGAAAA  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  442  AAGATCATTGTTGGGGATGTAGATGAACCACCACTATTTTCCATGCCTTCCTACCTCATGGAAGTCTACGAAAA  515

Query 1185  TGCCAAGATTGGGACCGTCGTTGGTACAGTTTTGGCACAAGATCCTGACAGTATTAACAGCTTAGTAAGATACT  1258
            |||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||
Sbjct  516  TGCCAAGATTGGGACCGTCGTTGGTACAGTTTTGGCACAAGATCCTGACAGTACTAACAGCTTAGTAAGATACT  589

Query 1259  TCATCAACTACAATGTTGAAGACGACAGATTTTTCAACATTGATGCCAATACTGGGACCATTAGGACTACAAAG  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  590  TCATCAACTACAATGTTGAAGACGACAGATTTTTCAACATTGATGCCAATACTGGGACCATTAGGACTACAAAG  663

Query 1333  GTTCTCGACAGAGAAGAAACTCCATGGTACAACATCACAGTCACTGCTTCAGAAATTGATAATCCTGATTTGCT  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  664  GTTCTCGACAGAGAAGAAACTCCATGGTACAACATCACAGTCACTGCTTCAGAAATTGATAATCCTGATTTGCT  737

Query 1407  GAGCCATGTCACAGTGGGTATTAGAGTTCTGGATGTCAATGACAATCCACCCGAACTTGCCAGGGAATATGATA  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  738  GAGCCATGTCACAGTGGGTATTAGAGTTCTGGATGTCAATGACAATCCACCCGAACTTGCCAGGGAATATGATA  811

Query 1481  TTATTGTATGTGAAAATTCTAAGCCTGGCCAGGTTATTCATACCATCAGTGCCACTGATAAAGATGATTTTGCC  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  812  TTATTGTATGTGAAAATTCTAAGCCTGGCCAGGTTATTCATACCATCAGTGCCACTGATAAAGATGATTTTGCC  885

Query 1555  AATGGACCAAGGTTTAACTTCTTTCTTGATGAGCGCCTGCCTGTAAATCCAAACTTCACTCTGAAGGACAATGA  1628
            ||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct  886  AATGGACCAAGGTTTAACTTCTTTCTTGATGAACGCCTGCCTGTAAATCCAAACTTCACTCTGAAGGACAATGA  959

Query 1629  AGATAACACAGCCAGCATTCTGACAAGGCGGAGGAGATTTAGTCGAACTGTTCAGGATGTGTATTATCTGCCCA  1702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  960  AGATAACACAGCCAGCATTCTGACAAGGCGGAGGAGATTTAGTCGAACTGTTCAGGATGTGTATTATCTGCCCA  1033

Query 1703  TTATGATCTCTGATGGTGGAATCCCCTCTCTCAGCAGCAGCAGCACCCTCACCATCAGGGTTTGTGCATGCGAG  1776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034  TTATGATCTCTGATGGTGGAATCCCCTCTCTCAGCAGCAGCAGCACCCTCACCATCAGGGTTTGTGCATGCGAG  1107

Query 1777  AGAGATGGGCGTGTGCGGACCTGCCATGCAGAAGCCTTCCTGTCCTCGGCTGGTTTGAGTACAGGAGCCTTAAT  1850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108  AGAGATGGGCGTGTGCGGACCTGCCATGCAGAAGCCTTCCTGTCCTCGGCTGGTTTGAGTACAGGAGCCTTAAT  1181

Query 1851  CGCTATTCTTCTCTGTGTTCTCATTCTCCTGGCAATTGTGGTACTTTTTATCACCCTGAGGCGCAGCAAAAAAG  1924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182  CGCTATTCTTCTCTGTGTTCTCATTCTCCTGGCAATTGTGGTACTTTTTATCACCCTGAGGCGCAGCAAAAAAG  1255

Query 1925  AGCCCTTGATCATTTCAGAAGAGGATGTACGGGAGAACGTGGTCACCTATGATGATGAAGGAGGCGGAGAGGAA  1998
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256  AGCCCTTGATCATTTCAGAAGAGGATGTACGGGAGAACGTGGTCACCTATGATGATGAAGGAGGCGGAGAGGAA  1329

Query 1999  GACACAGGGGCCTTTGACATCACAGCCTTGAGGAATCCTTCTGCTGCTGAGGAGCTCAAGTACCGGAGGGATAT  2072
            |||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330  GACACAGAGGCCTTTGACATCACAGCCTTGAGGAATCCTTCTGCTGCTGAGGAGCTCAAGTACCGGAGGGATAT  1403

Query 2073  CAGACCTGAAGTGAAGCTCACTCCCAGACACCAGACATCATCCACCCTGGAAAGCATAGATGTTCAGGAATTTA  2146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404  CAGACCTGAAGTGAAGCTCACTCCCAGACACCAGACATCATCCACCCTGGAAAGCATAGATGTTCAGGAATTTA  1477

Query 2147  TTAAGCAAAGACTGGCAGAAGCAGACCTAGACCCTAGCGTTCCCCCTTATGACTCTCTTCAGACTTATGCCTAT  2220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478  TTAAGCAAAGACTGGCAGAAGCAGACCTAGACCCTAGCGTTCCCCCTTATGACTCTCTTCAGACTTATGCCTAT  1551

Query 2221  GAGGGTCAGAGATCAGAAGCTGGGTCTATCAGCTCGCTGGATTCAGCAACGACACAATCAGACCAGGATTATCA  2294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552  GAGGGTCAGAGATCAGAAGCTGGGTCTATCAGCTCGCTGGATTCAGCAACGACACAATCAGACCAGGATTATCA  1625

Query 2295  CTACCTTGGAGACTGGGGACCCGAGTTTAAAAAGTTAGCTGAACTCTATGGAGAAATAGAATCTGAAAGAACAA  2368
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1626  CTACCTTGGAGACTGGGGACCCGAGTTTAAAAAGTTAGCTGAACTCTATGGAGAAATAGAATCTGAAAGAACAA  1699

Query 2369  CT  2370
            ||
Sbjct 1700  CT  1701

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